BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08930.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942571 jgi|Araly1|942571|scaffold_603115.1 1266 0.0
> Ahg942571 jgi|Araly1|942571|scaffold_603115.1
Length=939
Score = 1266 bits (685), Expect = 0.0
Identities = 862/946 (91%), Gaps = 17/946 (2%)
Strand=Plus/Plus
Query 293 GTTTTGTCTAGGAAATTTTCTTCTTCGATGGAGAAGAAGCTGACTTTGTTGTTGTTG--G 350
||||||| || |||| |||||||| | ||||||||||||| || ||||||||||||| |
Sbjct 1 GTTTTGTTTAAGAAAATTTCTTCTACAATGGAGAAGAAGCCGATTTTGTTGTTGTTGTTG 60
Query 351 TTG-TGGTGGTTTTGTTCGTAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 409
||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGATGGTGATTATGTTCATAAATCTAACAAACGCCACCGTTAGGGTTCAGATTTGTCCT 120
Query 410 AGAGAATCTGCAAAAGATTATATCTTAGGGTTTCGAGATAAGTCAGCCTTGCATCGTCCT 469
| || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 121 AAAGGATCTGCAAAAGATTATATCTTAGGGTTTCAAGATAAATCAGCCTTGCATCGTCCT 180
Query 470 GGTTTTGTCACTGAGGGAGATGATCGGTGGCTACAAATGGCTGCAGATATGGTTGATAAG 529
| ||||||||| ||||||||||||| |||| ||||||||||| | |||||| |||||
Sbjct 181 GCTTTTGTCACCGAGGGAGATGATCAGTGGTTACAAATGGCTTCTGATATGATTGAT--- 237
Query 530 AAGAATAAGTGTGACTATGCGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 589
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAGAACAAGTGTGACTATGTGGCTTTACTCTTCTATGCATCATGGTGTCCTTTCTCCAGA 297
Query 590 TTAGTTAGACCAAGTTTTGATCTTATGTCTCTGTTATATTCATCGGTTCCACACTTTGCA 649
||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 298 TTACTTAGACCAAGCTTTGATCTTATGTCTTTGTTATATTCATCGGTTCCTCACTTTGCA 357
Query 650 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTGAGGAATCATCAGTTAAAGCTAGTACCTTGTCCAAGTATGGAGTTCATGGGTTTCCT 417
Query 710 ACTATCATCCTTATGAATTCGACAATGCTCGTAGTTTACCGGGGATCGAGAACTCTTGAT 769
|||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||
Sbjct 418 ACTATCATCCTTATGAATTCAACAATGGGCGTAGTTTACCGGGGATCCAGAACTCTAGAT 477
Query 770 TCCCTTGTTGCCTTCTACACTGATGTTACGGGAATTGAAACGATGGATGAAAGATGGGTT 829
|| |||||||||||||||| ||||||||| |||||||||| | ||||||||| ||||||
Sbjct 478 TCTCTTGTTGCCTTCTACAGTGATGTTACTGGAATTGAAAAGCTGGATGAAACTTGGGTT 537
Query 830 GAGA-GAAACAGATTAGTTCCTCATTTCCACGCAGA-GCCAGAAAATTGCCCGTTCCCAT 887
|||| ||| ||| ||||||| |||||||||| | || |||||| |||||||| |||||||
Sbjct 538 GAGAAGAA-CAGGTTAGTTCATCATTTCCACAC-GAAGCCAGAGAATTGCCCCTTCCCAT 595
Query 888 GGGCAAGAAGATCACCCGAGAATCTGCTTCGCCAAGAGACTTATCTGACGCTTGCCACGG 947
|||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 596 GGGCAACAAGATCACCGGAGAATCTGCTTCGCCAAGAGACTTACCTGACTCTTGCCACGG 655
Query 948 TGTTCGTCTTGTTGAGATTACTACACTTGATTTCCCCCACAATGGTTGTGTTCGTGAAAT 1007
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct 656 TTTTCGTCTTGTTGAGATTGCTACAGTTGATTTCCCCCACAATGGTTGTGTTAGCGAAAT 715
Query 1008 TCACTTGGGGACGGGT-G-TCA-AACATGAGACTAGGGAACCC-CTTGGAACATACTGT- 1062
||||||||||||||| | ||| |||||||||| ||||||| || ||| ||||| |
Sbjct 716 CCACTTGGGGACGGGTTGCTCATAACATGAGACCGGGGAACCTTCT-GGAGCATACCCTT 774
Query 1063 GACCATGTATCTTAAAGAACCTTGCATGAGTAGCAATTTGCAGGAAGGAGCCATGAATGC 1122
| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 G-CCATGTATCTCAAAGAACCTTGCATGAGTAGCAATTTGCAAGAAGGAGCCATGAATGC 833
Query 1123 TAGAGCATGGGCTTCCAAGTCTTTGGCTACTGTCTCAATTGCAGAATCAAGCTCATCAAG 1182
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 834 TAGAGCATGGGCTTCCAAGTCTTTGGCCACTGTCTCAATTGGGGAATCAAGCTCATCAAG 893
Query 1183 CAGAAGTGTTTCAGCTTCACAGTGACTTCATATTTTAACCATCTTG 1228
|||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 894 CAGAAGTGTTTCAGCTTCACAGTGACTTTATATTTTAACCTTCTTG 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5