BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08940.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942570 jgi|Araly1|942570|scaffold_603114.1 1703 0.0
> Ahg942570 jgi|Araly1|942570|scaffold_603114.1
Length=1243
Score = 1703 bits (922), Expect = 0.0
Identities = 1132/1231 (92%), Gaps = 24/1231 (2%)
Strand=Plus/Plus
Query 14 ATTACTCAAATGGCTTGGCTTCGTTTCTTCTCAAGAACCC---TAAAATCT-------C- 62
||| |||||||||||||| |||| |||||||||||||||| |||||||| |
Sbjct 12 ATTCCTCAAATGGCTTGGTTTCGATTCTTCTCAAGAACCCTAATAAAATCTCAAAACCCA 71
Query 63 -T-C--CCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATTTCAGAACCTCACCT 118
| | ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 72 ATCCTTCCCCAAATCTCATCTTCTTCCCCAAACCCTAACCCTAATCTCAGAACCTTACCT 131
Query 119 TTCTCAACCTCATTCCTCATCACGAAAACACCAGACAAATTaaaaaaaaagcgaaaaaaa 178
|||||||||||||| |||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 132 TTCTCAACCTCATTTCTCATCACAAAAACACCAAACAAATTAAAAAAAAGGCGAAAAAAA 191
Query 179 CCAGAATCCGCCAGAACCAAATCAATCCAACACGAATCAACCAAACTCCCACACTTGGAA 238
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 192 CCAGAATCCGCAAGAACCAAATCAATCCAACACGAATCAACCAAAATCCCACACTTCGAA 251
Query 239 TCACTCGTTTCACGCGACGCACATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCACTCGTTTCACGCGACGCTCATTTCCGATTCCTAATCCGATCCAAAGAATTCATCTCA 311
Query 299 AAGCAACCGGAGCGAATCCTCCGACTAGACGACGCCGGAAAACTCTACCGCGAACTCGGA 358
|||||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 312 AAGCAACCAGAGCGAATTCTCCGACTAGATGACGCCGGAAAACTCTACCGTGAGCTCGGA 371
Query 359 TTCCCTCGCGGTCGTAAAGTTACGAAATTCATACCTAAACATCCTTTGATCTTTCAAACG 418
||||| ||||||||||| ||||| ||||||||| ||||||||| |||| |||||||||
Sbjct 372 TTCCCACGCGGTCGTAAGGTTACTCGATTCATACCAAAACATCCTCTGATTTTTCAAACG 431
Query 419 TATAGACATAGCGATGGGAAGATTTGGTTAGGGTTTACGGAATTTATGGAGGATTTGTTA 478
||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 432 TATCGACATAACGATGGGAAGATTTGGTTAGGGTTTTCGGAGTTTATGGAGGATTTGTTA 491
Query 479 GATGAAGAGAAAGGTTTAATGGAATCAATGGAGTTAGATAGAGTTAATTGTGTTCGTAAG 538
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 492 GATGAAGAGAAAGGTTTAATGGAATTAATGGAGTTAGATAGAGTTAATCGAGTTCGTAAG 551
Query 539 CTATTGATGATGACGAAAGATAAACGAATCCTGTTGAGTAAAATCCATCACACTCGATTG 598
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 552 TTGTTGATGATGACGAAAGATAAACGAATTTTGTTGAGTAAAATCCATCACACTCGATTG 611
Query 599 CTATTCGGTATTCCTGAAGATTTTCGAGACCGGGTTGCGAAATATCCGGATTATTTTCGG 658
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 612 CTATTCGGTATTCCTGAAGATTTTCGAGACCAGGTTGCGAAGTATCCGGATTATTTCCGG 671
Query 659 GTTGTTACGGGTGGAGATGGGAATAGAGTGCTTGAGTTAGTGAATTGGGACACGAATCTT 718
|||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 672 GTTGTTACGGGTGGAGATGGGAATCGAGTGCTTGAGTTGGTGAATTGGGATGCGAATCTT 731
Query 719 GCGGTAAGTGAGCTCGAGAGACTGTTTATGATTGACGAAGATAAGGCGAAACGGG-TGTT 777
||||| ||||||||||| |||| ||||||| ||||||||||||| |||||||| | | ||
Sbjct 732 GCGGTTAGTGAGCTCGAAAGACAGTTTATGGTTGACGAAGATAAAGCGAAACGAGCT-TT 790
Query 778 TAAGTTTCCGGTGAAGCATGGGAAGGAGTTGGAGTTGGAAGAGAAGGATACGAGGAAGCT 837
||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 791 TAAGTTTCCGGTGAAACATGGGAAGGAGTTGGAATTGGAAGAGAAGGATAAGAGGAAGCT 850
Query 838 GAATTTGTTGAATACGTTTCCTCTTG-TTTCGCCGTATTCGGATGGTTGGAAGCTTGATG 896
|||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 851 GAATCAGTTGAATACGTTTCCT-TTGGTTTCGCCGTATTCGGATGGTTGGAAGTTTGATG 909
Query 897 TTTGGA-GTTTGGAAGCGGAGAAGTATCGCGTTGGGATTGTGCACGAGTTCTTGAACTTG 955
| |||| ||| | ||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 910 TGTGGACGTTAG-AAGCGGAGAAGTACCGTGTTGGGATTGTTCACGAGTTCTTGAACTTG 968
Query 956 ACGTTGGAGAAGAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTG 1015
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ACGTTGGAGAAAAGAGCTTCGATTCATCATATTGTGGAGTTTAAAGATGAGTTTAGTTTA 1028
Query 1016 ACTAGACAGACTTATCAGATGTTGAAGAAGCAGTCCATGAGTTTTTACTTGGCTGGTACT 1075
|||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||
Sbjct 1029 ACTAGACAGACTTATCTGATGTTGAAGAAGCAGCCCACGACTTTTTACTTGGCTGGTACT 1088
Query 1076 GAGATGAACTGGACTGTGTTTTTGAAGGATGCTTACGACGAGAATGGTGTTTTGGTTAGT 1135
|||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1089 GAGATGAATTGGACTGTGTTTTTGAAGGATGGTTACGACGAGAATGGTGTTTTGATTAGT 1148
Query 1136 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTCTATAAGTATGCAGATATGCAGCAGATG 1195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1149 AAAGATCCACAGGTTGTGTTTAATGAAAAGCTGTATAAGTATGCAGATATGCAGCAGATG 1208
Query 1196 GAGCAAGTTGGTTAATTCTGGCTCAAATAAT 1226
|| | ||| |||||||||||| ||| |||
Sbjct 1209 GA--A-GTTAATTAATTCTGGCTAAAACAAT 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5