BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08950.1
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489716 jgi|Araly1|489716|fgenesh2_kg.6__2850__AT4G08950.1 1694 0.0
> Ahg489716 jgi|Araly1|489716|fgenesh2_kg.6__2850__AT4G08950.1
Length=1147
Score = 1694 bits (917), Expect = 0.0
Identities = 1092/1172 (93%), Gaps = 30/1172 (3%)
Strand=Plus/Plus
Query 4 TCTCACAAACCAATCTAAACATCAAAGACAAAAACCAAACCTCTTTCACTATTACACTTT 63
|||||||||||||||||||||| | |||||||||| || ||||||||||||||||
Sbjct 1 TCTCACAAACCAATCTAAACAT------C-AAAACCAAACTTCCTTCACTATTACACTTT 53
Query 64 TCCTCaaaaaaaagaaaaaTGTATTTGTTAGTGTTTAAACTCTTTCTATTTTTGTCTCTT 123
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 54 TCCTC--AAAAAAGAAAAATGTATTCGTTAGTGTTTAAACTCTTTCTATTTTTATCTCTT 111
Query 124 CTTCAAATCTCTGTCTCTGCTAGAAACCTAGCTTCACAAGAACCAAACCAGTTTCAACTA 183
|| |||||||||||||||||||| |||||||| | ||||||||||||||||| |||||
Sbjct 112 CTCCAAATCTCTGTCTCTGCTAGGAACCTAGCAACTGAAGAACCAAACCAGTTTAAACTA 171
Query 184 CTCAAGTACCACAAAGGAGCTCTTCTCTCCGGCAAAATCTCCGTTAACCTAATCTGGTAC 243
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 172 CTAAAGTACCACAAAGGAGCTCTCCTTTCCGGCAAAATCTCCGTTAACCTAATCTGGTAC 231
Query 244 GGCAAATTCAAACCATCTCAAAGAGCAATCATCTCCGACTTCATTACCTCACTCACACAC 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 232 GGCAAATTCAAACCATCTCAAAGAGCAATCATCTCCGACTTCATAACCTCACTCACACAC 291
Query 304 ACTTCTCCTACGTCCAAAACTCTCCACCAACCATCTGTTGCCACGTGGTGGAAAACCACA 363
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 292 ACTTCTCCTACGTCCAAAACTCTCCACCAACCATCTGTCGCCACGTGGTGGAAAACCACA 351
Query 364 GAAAAATACTACAAACTCGCAACACCCAGCAAAAACTCATCACCTCTGTCTCTAACTCTC 423
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 352 GAAAAATACTACAAACTCGCAACACCCAGTAAAAACTCATCACCTCTTTCTCTAACTCTC 411
Query 424 GGGAAACAAATCATCGACGAGTCTTGCTCTCTAGGAAAATCTTTAACCGATAAAAAGATT 483
|||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 412 GGGAAACAAATCCTCGACGAGTCTTGCTCTCTTGGAAAATCTTTAACCGATACAAAGATT 471
Query 484 --CAAACCCTAGCTTCGAAAGGAGACCAACGCAACGCCATCAACGTCGTTTTGACTTCAG 541
| || |||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 472 CGCCAA--CTAGCTTCAAAAGGTGACCAACGCGACGCCATCAACGTCGTTTTGACTTCAG 529
Query 542 CTGACGTTACGGTTACAGGATTTGGTATGAGTCGTTGCGGGACTCACGGACACGCTCGTG 601
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 530 CTGACGTTACAGTTACAGGATTTGGTATGAGTCGTTGCGGGACTCATGGACACGCTCGTG 589
Query 602 GTTTAGGTAAACGTGGCTCCAAGTTTGCTTACATTTGGGTTGGAAACTCTGAGACACAAT 661
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 590 GTTTAGGTAAACGTGGCTCCAAGTTTGCTTACATTTGGGTCGGAAACTCTGAGACACAAT 649
Query 662 GTCCTGGTCAATGCGCGTGGCCTTTCCACGCGCCGGTGTACGGTCCACAGAGTCCACCAC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GTCCTGGTCAATGCGCGTGGCCTTTCCACGCGCCGGTGTACGGTCCACAGAGTCCACCAC 709
Query 722 TAGTGGCACCAAACAATGACGTGGGACTCGATGGGATGGTTATTAACTTAGCTAGTCTTT 781
| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
Sbjct 710 TTGTGGCACCAAACAATGACGTTGGACTTGACGGGATGGTTATTAACTTAGCTAGTCTCT 769
Query 782 TAGCTGGAACCGCAACGAACCCTTTTGGTAATGGTTACTATCAAGGTCCACAAAACGCAC 841
|||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 770 TAGCTGGAACTGCAACGAACCCGTTTGGTAATGGTTATTACCAAGGTCCACAAAACGCAC 829
Query 842 CGCTTGAAGCTGCTTCTGCTTGTCCTGGCGTTTATGGTAAAGGAGCTTATCCTGGTTACG 901
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 830 CGCTTGAAGCTGCGTCTGCTTGTCCTGGCGTTTATGGTAAAGGAGCTTATCCTGGTTATG 889
Query 902 CTGGAGATTTGCTTGTGGATACTACAACGGGAGGTAGTTTTAATGCGTATGGTGCAAACG 961
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CTGGAGATTTACTTGTGGATACTACAACGGGAGGTAGTTTTAATGCGTATGGTGCAAACG 949
Query 962 GCAGGAAGTTTTTGCTTCCTGCTTTGTATGATCCTACGACGTCGGCTTGCTCTACTATGG 1021
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 950 GCAGGAAGTTTTTGCTTCCAGCTTTGTATGATCCTACGACGTCGGATTGCTCTACTATGG 1009
Query 1022 TCTGAATACTaaaaaaaaGTCCAATGTTTGGTCTTTGGTAGTAGAAAATAATATTCTAGC 1081
||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 1010 TCTGA-T-C-----------C-AATGTTTGGTCTTTGGTAGTAGAAAATAATATTCTAGT 1055
Query 1082 GTAATTCTTTTGTTATGTTTG---GTTACAAATTCTAGTATAATTCAATTTATTCATTAA 1138
||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1056 GTAATTCTTTTTTTTTTTTTTTTTGTTACAAATTCTAGTGTAATTCAATTTATTCATTAA 1115
Query 1139 TATTATTCTCATTTTTCCCTTCATGTTGTATG 1170
||||||||||||||| ||||| ||||||||||
Sbjct 1116 TATTATTCTCATTTTCCCCTTAATGTTGTATG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45861869151
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5