BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08960.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489715 jgi|Araly1|489715|fgenesh2_kg.6__2849__AT4G08960.1 2085 0.0
> Ahg489715 jgi|Araly1|489715|fgenesh2_kg.6__2849__AT4G08960.1
Length=1361
Score = 2085 bits (1129), Expect = 0.0
Identities = 1257/1319 (95%), Gaps = 8/1319 (1%)
Strand=Plus/Plus
Query 9 TCGTTACGTCTCTGTAAATCACTGAGAAAATGGAACCTCCAAAGGAACAACAAAACACGC 68
|||||||||||||||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct 1 TCGTTACGTCTCTGTAAA-CACTTCGAAAATGGAATCTTCAAAGGAACAACAAAACACGC 59
Query 69 CGGAGAAATCAATCTCCGATGCTCCAGCCACCATAT-CCTCCGCCTTTCCTCCTTCCGGA 127
|||||||||||| |||||| ||||| |||||| | | |||||||||||||||| |||||
Sbjct 60 CGGAGAAATCAACCTCCGAAGCTCCGGCCACCGT-TCCCTCCGCCTTTCCTCCCTCCGGT 118
Query 128 TGCTGCACAAACTGCGGCGGACCAACGATTTCAGAAGCACCACCACCACTAGCTTCATTC 187
||||| ||||| |||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 119 TGCTGTACAAAGTGCGGCGGACCAACGATTTCCG-A--ACCACCACCACTCGCTTCATTC 175
Query 188 CCAGAGATGTCACCACCACCAAACTATCGTCCGATCCGAGCTCCAGCAATCAATCTCCCA 247
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 176 CCGGAGATGTCACCACCACCAAACTATCGCCCGATCCGAGCTCCAGCAATCAATCTCCCT 235
Query 248 CACAACTCTCAAGCAATAATCCTCTCTCCCGTTCCTCACGCCGAACAAGTCCCCGTCGTA 307
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 236 TACAACTCTCAAGCAATAATCCTCTCTCCAGTTCCTCACGCCGAACAAGTCCCCGTCGTA 295
Query 308 TCTCCGCCCTATCATTTCCAATCTCCCGTCAAACGAATCCACTCTCCCGACGATATCCGC 367
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 TCTCCGCCGTATCAATTCCAATCTCCCGTCAAAAGAATCCACTCTCCCGACGATATCCGC 355
Query 368 CGATTTCACGAATCCGCTTCTTGTAAGAACTTCTTAGGATTCGTAGTATCTCTCTCAGAA 427
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CGATTTCACGAATCTGCATCTTGTAAGAACTTCTTAGGATTCGTAGTATCTCTCTCAGAA 415
Query 428 TCGATCCGTGGATTTAAGATCTCAGATCCTTGTCATATCTCACCAACCGTCGCCGCCATA 487
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 TCGATCCGTGGATATAAGATCTCAGATCCTTGTGATATCTCACCAACCGTCGCCGCCATA 475
Query 488 GTTTCAATCCTTGAAACATTGTTACAATGGATCGATGAGATTCCTCCTGCTCAACAATCA 547
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GTTTCAACCCTTGAAACTTTGTTACAATGGATCGATGAGATTCCTCCTGCTCAACAATCG 535
Query 548 GCTCGATACGGTAACGTTTCGTTTAGGTCATGGCATGAACGGCTCCGTGAGAGAGGTGAA 607
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 GCTCGATACGGTAACGTTTCGTTTAGGTCATGGCATGAACGGCTTGGTGAGAGAGGTGAA 595
Query 608 TCGCTTATACTTGAGTTTCTTCCTGAGGAATTTAAAGAATCTGTGATTGAGATTGTTCCT 667
|||||||| ||||||||||||||||||||||||||||||||| | || |||||||| |||
Sbjct 596 TCGCTTATTCTTGAGTTTCTTCCTGAGGAATTTAAAGAATCTATAATCGAGATTGTCCCT 655
Query 668 TACTTCTTCGATAGCTTTGGGAACTCAAGTAGGATTGATTACGGAACGGGACACGAAACA 727
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 656 TACTTCTTCGATAGCTTTGGGAACTCAAGTAGGATTGATTACGGAACCGGACACGAGACG 715
Query 728 AATTTCGCGGCGTGGTTGTATTGTTTAGCTAGGATGGGGATAGTGAAAGAAGAGGATTAT 787
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 AATTTCGCGGCTTGGTTGTATTGTTTAGCTAGGATGGGGATTGTGAAAGAAGAGGATTAT 775
Query 788 CATAGTTTGGTTGCTAGGGTTTTTGTTAAGTATTTGGAGTTGATGAGGAAATTGCAAATG 847
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CATGGTTTGGTGGCTAGGGTTTTTGTTAAGTATTTGGAGTTGATGAGGAAATTGCAAATG 835
Query 848 GTTTATTGTTTAGAACCAGCTGGATCTCATGGAGTTTGGGGACTTGATGATTACCATTTC 907
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GTTTATTGCTTAGAACCAGCTGGATCTCATGGAGTTTGGGGACTTGATGATTACCATTTC 895
Query 908 TTGCCTTTCATATTTGGGAGTTCTCAGTTGATTGATCATAAGTATATGAAACCGAAATCG 967
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTGCCATTCATATTTGGGAGTTCTCAGTTGATTGATCATAAGTATATGAAACCGAAATCG 955
Query 968 ATTCATAACGATGATATTTTGGAGAATTTCTCTAGTGAATACATGTACTTGTCTTGTATT 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATTCATAACGATGATATTTTGGAGAATTTCTCTAGTGAATACATGTACTTGTCTTGTATC 1015
Query 1028 GCATTTGTGAAGAAGGTTAAGAAAGGTTTGTTCGCTGAGCATTCGCCGTTGTTGGATGAT 1087
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1016 GCATTTGTGAAGAAGGTGAAGAAAGGTTTGTTTGCTGAGCATTCGCCGTTGTTGGATGAT 1075
Query 1088 ATAAGTGGTGTACCGAACTGGAAGAAAGTGAATAGCGGTTTGCTTAAGATGTATAGAGTT 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATAAGTGGTGTACCGAACTGGAAGAAAGTGAATAGCGGTTTGCTTAAGATGTATAGAGTT 1135
Query 1148 GAAGTGCTTGAGAAAGTTCCGATTATGCAGCATTTCCTCTTTGGCTGGCTCATCAAATGG 1207
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAAGTGCTCGAGAAAGTTCCGATTATGCAGCATTTCCTCTTTGGCTGGCTCATCAAATGG 1195
Query 1208 GAAGAGTGATTTACTTCAGTGTGCCATACATGGAAGCAGGGACAGCGATTTTCTCTTCCT 1267
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1196 GAAGAGTGATTTACTTCAGTG--CCATAAATGGAAGCAGGGACAACGATTTTCTCTTCCT 1253
Query 1268 TGAGGTTGCTTAACATAAAGTAGAGACGCTTTTGCTTTTGCATGTATCTGATAGGCATG 1326
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1254 TGAGGTGGCTTAACATAAAGTAGAGACGCCTTTGCTTTTGCATGTATCTGATACGCATG 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5