BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G08980.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942565 jgi|Araly1|942565|scaffold_603109.1 1727 0.0
> Ahg942565 jgi|Araly1|942565|scaffold_603109.1
Length=1108
Score = 1727 bits (935), Expect = 0.0
Identities = 1045/1099 (95%), Gaps = 4/1099 (0%)
Strand=Plus/Plus
Query 126 TTTGTTAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTGATTCCAGATGCTC 185
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 14 TTTG-TAGATGGAAGAAGATTGCGAGTTTCGACATTGGGATGAGTTAATTCCAGACGCTC 72
Query 186 TTGGTTTAATCTTTAGCCACTTACCTCTTCAAGAAGTACTAACAGTGGTGCCTAGAGTTT 245
|||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||
Sbjct 73 TTGGTTTAATCTTTAGTCATTTAGCTCTTCAAGAGGTACTAACAGTGGTGCCTAGAGTTT 132
Query 246 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GCAAAGCATGGAACAGAGCTGTTACTGGACCTTATTGTTGGCAAGAGATTGACATTGAGC 192
Query 306 TGTGGAGTAACCGTTTTCACCAGTCTGATCATCTTGACCGGATGCTTGAGATGTTGATCC 365
||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 193 TGTGGAGTAACCGTTGTCATCAGTCTGATCATCTTGACCGGATGCTTGAAATGTTGATCC 252
Query 366 CTAGAAGCGCTGGCTCTTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 425
|||| ||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CTAGGAGCTCTGGTTCGTTGCGAAAACTCTCCGTTACTGGCCTTCGAAATGACTCTATCT 312
Query 426 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAGACCTTGAAGGTGCCAAGAAGTGGTC 485
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 313 TCTCCTTCATTGCACAACATGCTGGTTCACTTAAAACCTTGAAGGTGCCAAGAAGTGGTC 372
Query 486 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTCTCGTCTCTCACTTTCTTGGATT 545
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 373 TGACTAATTCGGGTGTGGTAAACGTAGCTGAAAAGCTTTCGTCTCTCACTTTCTTGGACT 432
Query 546 TGAGCTACTGCTGCAAAATAGGCCCAGAGGCGATACAAGCCATAGGAAAACACTGTAAAT 605
||||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||
Sbjct 433 TGAGCTACTGCTGCAAAGTAGGTCCAGAGGCGATACAAGCCATAGGAAACCATTGTAAAT 492
Query 606 CACTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 665
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CCCTGAGAGAGTTTTGCAGAAACATGCATCCATTGGATGTAGCAAGTGTTGTCTCTCACG 552
Query 666 ACGATGAAGCTTATGCTATCGCCAATACAATGCCGAAGCTGAAGCGGTTAGAGATAGCTT 725
|||||||||||||||| || ||||| |||||||| ||||||||||||||||| || || |
Sbjct 553 ACGATGAAGCTTATGCAATTGCCAACACAATGCCAAAGCTGAAGCGGTTAGAAATTGCAT 612
Query 726 ACCACCGAGTCAGCACAGAAGGAGTACTCAAGATCTTATCGTGCTGTGTTTTTCTTGAGT 785
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 613 ATCACCGAGTCAGCACAGAAGGAGTACTCAAAATCTTATCGTGCTGCGTTTTTCTTGAGT 672
Query 786 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTTGATAACAAGTTTTTCAAAGAGAAGT 845
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 673 TCTTGGAACTTAGAGGCTGTTGGGACGTGCAACTCGATAACAAGTTCTTCAAAGAAAAGT 732
Query 846 TTCCGGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAATGATT 905
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 TTCCTGATATGAAAGTGTTAGGTCCACGCGTGATCGGATTCTATGATATGATAAACGATT 792
Query 906 GGGAGGATTGCTGCTCAGATTACTTCTCAGATGGGTCTGATTACTTGGCTTGGGAGTTTT 965
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct 793 GGGAGGATTGCTGCTCAGATTATTTCTCAGATGGGTCTGATTACCTGGCCTGGGAGTTTT 852
Query 966 TTGAAGATGGTGTAATGGGAGAGTTCTATGAGGATGAGTTTGAGCATGGTTGGGACGATA 1025
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 853 TTGAAGATGGTGTAATGGGAGAGTTCTATGAAGATGAGTTTGAGCATGGTTGGGATGATA 912
Query 1026 ATTTTTATGCGGAAAACGCAGTTTTAGACATGGAACCGCATATTTGGCCACCATCTCCAT 1085
||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct 913 ATTTTTATGCGGACAACGCAATTTTAGACATGGAACCGCATGTTTGGCCGCCATCTCCAT 972
Query 1086 GAACCAGGCCTTGTTATGTTCGAAGTCTCTACCTAAAAGTTGCAACTAGGAATGGTTTTA 1145
|||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 973 GAACCAGGTCTTGTTATGTTCGAAGTCTCTACCTAAA-GTTGCTACTAGGAATGGTTTTA 1031
Query 1146 GCCTCTCTTAAGTGTCTTAATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1205
|||||| | | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GCCTCT-T-ATGTGTCTTGATCTATGTATGGTGCTTGAACTTGTGTGGCTTCTTTGTGTT 1089
Query 1206 ATTCTAATCTAAAAGGCTT 1224
|||||||| ||||||||||
Sbjct 1090 ATTCTAATATAAAAGGCTT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5