BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09000.2
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942561 jgi|Araly1|942561|scaffold_603105.1 1275 0.0
Ahg922661 jgi|Araly1|922661|scaffold_103942.1 863 0.0
Ahg952013 jgi|Araly1|952013|scaffold_2900002.1 414 8e-115
Ahg949114 jgi|Araly1|949114|scaffold_801001.1 403 2e-111
Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1 399 2e-110
> Ahg942561 jgi|Araly1|942561|scaffold_603105.1
Length=848
Score = 1275 bits (690), Expect = 0.0
Identities = 738/761 (97%), Gaps = 4/761 (1%)
Strand=Plus/Plus
Query 151 tcatcttcttctcCGATCTAAACAACAATGGCGACACCAGGAGCTTCCTCAGCAAGAGAT 210
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TCATCATCATCTCCGATCTAAACAACAATGGCGACACCAGGAGCATCCTCAGCAAGAGAA 60
Query 211 GAATTCGTATACATGGCGAAACTCGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAA 270
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAATTCGTATACATGGCGAAACTCGCTGAACAAGCAGAGCGTTACGAAGAAATGGTTGAA 120
Query 271 TTCATGGAGAAAGTCGCGAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAAT 330
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCATGGAAAAAGTCGCAAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAAT 180
Query 331 CTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATT 390
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 CTCCTCTCCGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCATGGAGAATCATC 240
Query 391 TCATCGATCGAACAAAAGGAGGAGTCTCGCGGTAACGATGACCACGTTTCGTTGATCCGT 450
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TCATCGATCGAACAAAAGGAAGAGTCTCGTGGTAACGATGACCACGTTTCGTTGATCCGT 300
Query 451 GACTACAGAAGCAAAATCGAAACGGAACTTTCTGATATCTGTGACGGAATCCTTAAGCTT 510
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GACTACAGAAGCAAAATCGAAACGGAGCTTTCTGATATCTGTGACGGAATCCTTAAGCTT 360
Query 511 CTCGATACGATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATC-TGAA 569
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 361 CTCGATACGATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCAAAGGTGTTTTA-CTTGAA 419
Query 570 GATGAAAGGTGATTATCATAGGTACTTGGCTGAGTTCAAATCTGGTCAAGAGAGGAAAGA 629
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 420 GATGAAAGGTGATTATCATAGATACTTGGCTGAGTTTAAATCTGGTCAAGAGAGGAAAGA 479
Query 630 TGCTGCTGAACATACTCTTACTGCTTACAAAGCTGCTCAGGATATTGCTAATTCTGAATT 689
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TGCTGCTGAACATACACTCACTGCTTACAAAGCTGCTCAGGATATTGCTAACTCTGAATT 539
Query 690 GGCTCCAACGCATCCGATTCGTCTTGGTCTT-GCGTTGAACTTCTCTGTGTTTTACTATG 748
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 540 GGCTCCAACGCATCCGATTCGTCTTGGT-TTAGCGTTGAACTTCTCTGTGTTTTACTATG 598
Query 749 AGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAA 808
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAA 658
Query 809 TTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGC 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGC 718
Query 869 TTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 909
|||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 759
Score = 97.1 bits (52), Expect = 3e-19
Identities = 70/78 (90%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1060 CAGGACGATGTTGCTGATGACATCAAAGAAGCAGCACCAGCAGCAGCAAAACCCGCTGAC 1119
||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 757 CAGGACGATACTACTGATGACATCAAAGAAGCAGCACCAGCAGCACCAAAACCTGCTGA- 815
Query 1120 GAGCAACAATCCTAAGTC 1137
|| ||||||||||||||
Sbjct 816 -AG-AACAATCCTAAGTC 831
> Ahg922661 jgi|Araly1|922661|scaffold_103942.1
Length=845
Score = 863 bits (467), Expect = 0.0
Identities = 652/741 (88%), Gaps = 13/741 (2%)
Strand=Plus/Plus
Query 177 AATGGC-G-A-CACCAGGAGCTTCCTCAGCAAGAGATGAATTCGTATACATGGCGAAACT 233
|||||| | | |||||| | | ||||| || || || || ||||| ||| | || |||||
Sbjct 21 AATGGCGGCACCACCAGCATCATCCTCGGCGAGGGAAGAGTTCGTTTACCTCGCAAAACT 80
Query 234 CGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAGAAAGTCGC-GAAAG 292
||| |||||||| || ||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 81 CGCTGAACAAGCGGAACGTTACGAAGAAATGGTTGAATTCATGGAAAAAGTCGCTG-AAG 139
Query 293 CTGTTGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 352
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CCGTCGACAAAGACGAACTCACCGTCGAAGAACGTAATCTCCTCTCCGTCGCTTACAAAA 199
Query 353 ACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATTTCATCGATCGAACAAAAGGAGG 412
|||||||||| |||||||||||||| ||||||||||| || || || ||||||||||| |
Sbjct 200 ACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAATCATCTCTTCCATTGAACAAAAGGAAG 259
Query 413 AGTCTCGCGGTAACGATGACCACGTTTCGTTGATCCGTGACTACAGAAGCAAAATCGAAA 472
|| ||| |||||||||||||| || | ||||||||| ||||||||||| ||||||
Sbjct 260 AGAGTCGTGGTAACGATGACCATGTAACCACGATCCGTGATTACAGAAGCAAGATCGAAT 319
Query 473 CGGAACTT-TCTGATA-TCTGTGACGGAATCCTTAAGCTTCTCGATACGATTCTCGTTCC 530
| || || || || | |||||||||| || ||||||||||| ||||| | || |||||
Sbjct 320 CTGAG-TTATC-GAAAATCTGTGACGGTATTCTTAAGCTTCTTGATACTAGACTTGTTCC 377
Query 531 CGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATCTGAAGATGAAAGGTGATTATCATAG 590
||| ||||| ||||||||||||||| ||||| || |||||||| || |||||||||||
Sbjct 378 AGCTTCTGCTAATGGAGATTCGAAGGTTTTTTACCTTAAGATGAAGGGAGATTATCATAG 437
Query 591 GTACTTGGCTGAGTTCAA-ATCTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTTA 649
||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||| |
Sbjct 438 GTATTTGGCTGAGTTTAAGA-CTGGTCAAGAGAGGAAAGATGCTGCTGAACATACTCTCA 496
Query 650 CTGCTTACAAAGCTGCTCAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTC 709
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CCGCTTACAAAGCCGCTCAGGATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTC 556
Query 710 GTCTTGGTCTTG-CGTTGAACTTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCAGAT 768
|||||||| ||| | |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 557 GTCTTGGT-TTGGCTTTGAACTTCTCTGTGTTTTACTATGAGATTCTTAATTCTCCTGAC 615
Query 769 CGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTT 828
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 616 CGTGCTTGTAATCTCGCTAAGCAGGCGTTTGATGAAGCCATTGCTGAGTTGGATACTCTT 675
Query 829 GGTGAAGAGTCATACAAGGACAGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACT 888
|| || |||||||||||||| ||||| ||||| ||||||||||||||||| || || |||
Sbjct 676 GGAGAGGAGTCATACAAGGATAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTTACT 735
Query 889 CTCTGGACTTCTGATATGCAG 909
|||||||||||||| ||||||
Sbjct 736 CTCTGGACTTCTGACATGCAG 756
> Ahg952013 jgi|Araly1|952013|scaffold_2900002.1
Length=371
Score = 414 bits (224), Expect = 8e-115
Identities = 235/240 (98%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 671 ATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTT-GCGTTGAAC 729
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 41 ATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGT-TTAGCGTTGAAC 99
Query 730 TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAG 789
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 100 TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAG 159
Query 790 CAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC 849
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 CAGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC 219
Query 850 AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 909
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 220 AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCTCTGATATGCAG 279
Score = 117 bits (63), Expect = 2e-25
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1060 CAGGACGATGTTGCTGATGACATCAAAGAAGCAGCACCAGCAGCAGCAAAACCCGCTGAC 1119
||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 277 CAGGACGATCCTACTGATGACATCAAAGAAGCAGCACCAGCAGCACCAAAACCTGCTGAC 336
Query 1120 GAGCAACAATCCTAAGTC 1137
||||||||||||||||||
Sbjct 337 GAGCAACAATCCTAAGTC 354
> Ahg949114 jgi|Araly1|949114|scaffold_801001.1
Length=516
Score = 403 bits (218), Expect = 2e-111
Identities = 233/240 (97%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 671 ATATTGCTAATTCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTT-GCGTTGAAC 729
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 185 ATATTGCTAATTCTGAATTGGCTCCAAAGCATCCGATTCGTCTTGGT-TTAGCGTTGAAC 243
Query 730 TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAG 789
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 TTCTCTGTGTTTTACTATGAGATTCTCAATTCTCCTGATCGTGCTTGTAATCTCGCTAAG 303
Query 790 CAGGCGTTTGATGAAGCAATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC 849
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CAGGCGTTTGATGAAGCTATTGCTGAATTGGATACTCTTGGTGAAGAGTCATACAAGGAC 363
Query 850 AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATGCAG 909
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 364 AGTACTTTGATTATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACCGCTGATATGCAG 423
Score = 117 bits (63), Expect = 2e-25
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1060 CAGGACGATGTTGCTGATGACATCAAAGAAGCAGCACCAGCAGCAGCAAAACCCGCTGAC 1119
||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 421 CAGGACGATCCTACTGATGACATCAAAGAAGCAGCACCAGCAGCACCAAAACCTGCTGAC 480
Query 1120 GAGCAACAATCCTAAGTC 1137
||||||||||||||||||
Sbjct 481 GAGCAACAATCCTAAGTC 498
> Ahg494127 jgi|Araly1|494127|fgenesh2_kg.7__3560__AT5G38480.1
Length=1063
Score = 399 bits (216), Expect = 2e-110
Identities = 549/706 (78%), Gaps = 38/706 (5%)
Strand=Plus/Plus
Query 220 TACATGGCGAAACTCGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAG 279
|||||||||||| | ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 137 TACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGAAATGGTTGAATTCATGGAG 196
Query 280 AAAGTCGCGAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGA-ACGTAATCTCCTCTC 338
||||| |||||| ||||||| || |||||| | || ||||| | | || || |||||
Sbjct 197 AAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGAAGAGAGG-AACCTTCTCTC 255
Query 339 CGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATTTCATCGAT 398
|| |||||||| ||||| || ||||| | | |||||||||||||||||||| |||||
Sbjct 256 TGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGAT 315
Query 399 CGAACA-AAAGGAG-GAGTCTC-GCGGTAACGATGACCACGTTTCG-TTGATCC-GTGAC 453
|| || |||| || ||| | | || ||||| || || ||| | || ||| | ||
Sbjct 316 TGAGCAGAAAGAAGAGAG-CAAAG-GG-AACGAGGATCATGTTGCTATT-ATCAAG-GAT 370
Query 454 TACAGAAGCAAA-ATCGAAACGGAACTTT-CTGATATCTGTGACGGAATCCTT-AA-GCT 509
||||| | ||| |||||||| || ||| | | |||||||| || || || || | |
Sbjct 371 TACAGGGG-AAAGATCGAAACCGAGCTTAGCAAA-ATCTGTGATGGGATT-TTGAATG-T 426
Query 510 TCTCGATA-CG-ATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATCTG 567
||| || | | || || |||| ||||| | ||| || || || |||||||| ||
Sbjct 427 TCTTGA-AGCTCAT-CTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTTTTACCTA 484
Query 568 AAGATGAAAGGTGATTATCATAGGTA-CTTGGCTGAGTTCAAATCTGGT-CAAGAGAGGA 625
|| ||||| || |||||||||||||| |||| | ||||| || ||||| | |||||||
Sbjct 485 AAAATGAAGGGAGATTATCATAGGTATCTTGCC-GAGTTTAAGGCTGGTGCT-GAGAGGA 542
Query 626 AAGATGCTGCTGAACAT-ACTCTTACT-GCTTACAAAG-CTGCT-CAGGATATTGCTAAT 681
|||| ||||||||| | ||| || | |||||||| | ||||| | | | ||||| | |
Sbjct 543 AAGAAGCTGCTGAA-AGCACT-TTGGTTGCTTACAA-GTCTGCTTCCG-ACATTGCCACT 598
Query 682 TCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTTGCGTTGAACTTCTCTGTGTTT 741
|||| || ||||| || || ||||| | ||||||||||| | |||||||||||||||
Sbjct 599 GCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTTT 658
Query 742 TACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGAT 801
|||||||| || ||||| || || ||||||||||| | ||||| |||||||| ||||||
Sbjct 659 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGAT 718
Query 802 GAAGCAATTGCTGAATTGGATACTCTTGG-TGAAGAGTCATACAAGGACAGTACTTTGAT 860
|| || || ||||| |||||||| |||| ||| || ||||||||||||||||| ||||
Sbjct 719 GATGCTATCGCTGAGTTGGATACA-TTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777
Query 861 TATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATG 906
||||||||||||| | || || ||||||||||||||||| ||||||
Sbjct 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATG 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5