BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09010.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489709 jgi|Araly1|489709|fgenesh2_kg.6__2843__AT4G09010.1 1411 0.0
> Ahg489709 jgi|Araly1|489709|fgenesh2_kg.6__2843__AT4G09010.1
Length=1160
Score = 1411 bits (764), Expect = 0.0
Identities = 873/926 (94%), Gaps = 6/926 (1%)
Strand=Plus/Plus
Query 273 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTG-CAGTCGGAATGGAATTAATA 331
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 237 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTGCCA-TGGGAATGGAATTAATA 295
Query 332 GGCAACGGTTTCATTAA-CAATGTGGGTGATGCAAAAGCTGCTGACTTGAATCAACGTAG 390
||||| ||||||||||| | |||||||||||||||| |||||||| ||||||||||||||
Sbjct 296 GGCAATGGTTTCATTAATC-ATGTGGGTGATGCAAATGCTGCTGATTTGAATCAACGTAG 354
Query 391 ACAACGATCCGAGTTTCAATCAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAA 450
||||||||||||| |||||||||||||||||||| |||||| | | |||||||||||||
Sbjct 355 ACAACGATCCGAGCTTCAATCAAAGATCAAGATTACGCTTTCGAGCGCCATTAAGGCTAA 414
Query 451 ACCGGAGCTTGTACCTTCCTTACTCAAACTAGCTCTCAATGATGCTATGACTTATGATAA 510
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 ACCGGAGCTTGTACCTTCCATACTCAAACTAGCTCTCAATGATGCAATGACTTATGATAA 474
Query 511 GGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGCTCTGAGCTAAGTAGAGC 570
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 475 GGCTACAAAATCCGGGGGAGCCAATGGATCTATTCGGTTCAGCTCTGAGCTAAGTAGAGC 534
Query 571 AGAGAATGAGGGACTTTCTGATGGGTTGAGTTTGATAGAGGAAGTGAAGAAGGAGATTGA 630
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 535 AGAGAACGAGGGACTTTCTGATGGGTTGAGTCTGATAGAGGATGTGAAGAAGGAGATTGA 594
Query 631 CTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGACAATC 690
||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 595 CTCGATCTCGAAGGGAGGGCCTATTTCATATGCAGATCTCATTCAATTGGCAGGACAATC 654
Query 691 AGCGGTCAAGTTTACATATTTAGCATCGGCTATCCGAAAATGTGGTGGAAATGAAGAGAA 750
||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 655 AGCGGTCAAGTCTACGTTTTTAGCATCGGCAATCCGCAAATGTGGTGGAAATGAAGAAAA 714
Query 751 GGGGAACTTACTTTACACAGCATATGGTTCAGCTGGTCAGTGGGGATTGTTTGATAGAAA 810
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 715 AGGGAACTTACTCTACACAGCATATGGTTCTGCTGGTCAGTGGGGCTTGTTTGATAGAAA 774
Query 811 TTTTGGAAGGAGTGATGCAACAGAGGCTGATCCAGAAGGCAGAGTCCCACAATGGGGGAA 870
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 775 TTTCGGAAGGAGTGATGCAACTGAGGCAGATCCAGAAGGCAGAGTCCCACAGTGGGGTAA 834
Query 871 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTCAGCT 930
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCCATTGGATTGGGTCCTCGTCAGCT 894
Query 931 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAAGCT-GCAACAGAACAGCTCTTAGCTA 989
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 895 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAA-CTAGCAACAGAACAGCTCTTGGCTA 953
Query 990 CTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTC 1049
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 CTGACCCGCAAGTTGCTCCATGGGTTCAGAAGTACCAAAGAAGCCGTGAAACCGTATCTC 1013
Query 1050 AGACTGATTACGAGGTTGATCTCATAACTGCATTCACAAAGCTAAGTTGCTTAGGACAGC 1109
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 1014 AGACAGATTACGAGGTTGATCTAATAACAGCATTCACAAAGCTAAGTTGCTTAGGACAAC 1073
Query 1110 AAATCAACTTCGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1169
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AAATCAACTTCGAGGCATACACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1133
Query 1170 TATAAGCTATGTACACTATATGTATA 1195
||||||||||||||||||||||||||
Sbjct 1134 TATAAGCTATGTACACTATATGTATA 1159
Score = 385 bits (208), Expect = 5e-106
Identities = 232/243 (95%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACActc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACACTC 60
Query 61 tccattttcttcagacaactctttctcctttcttctctcttctctgtctcATCACAAACC 120
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCATTTTCTTCAGACAACTCTCTCTTCTTTCTTCTCTCTTCTCTGTCTCATCACAAACC 120
Query 121 AGAAATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGATGGGAGGAGTCTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180
Query 181 TCAACATCTCACTACACTCTCTTCTTCTTCT-C--ATCGCTCTGCTGTTATACGATGTT- 236
||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||| ||
Sbjct 181 TCAACATCTCACTACACTCTCTTCTTCTTCTTCTCATCGCTCTGCTGTCATAAGATCTTT 240
Query 237 CCA 239
|||
Sbjct 241 CCA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5