BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09012.1

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894898 jgi|Araly1|894898|Al_scaffold_0006_2894                    418    2e-116
  Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1         307    5e-83 


> Ahg894898 jgi|Araly1|894898|Al_scaffold_0006_2894
Length=282

 Score =  418 bits (226),  Expect = 2e-116
 Identities = 265/283 (94%), Gaps = 5/283 (2%)
 Strand=Plus/Plus

Query  249  ATGACATTAGGGTTGTTATTCGGG-ATTGGAAGAACATTCCGAAGAAAGAGAGCTTCTTC  307
            |||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct  1    ATGACATTAGGGTTGTTATT-GGGAATTGGAAGAACATTTCGAAGAAAGCGAGCTTCTTC  59

Query  308  GCTTGATATTCTCTCTCCCAAACGAGCTCCCAGAGACTTTTACAAGGGAAAAAACTGTAA  367
            |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  60   GCTTGACATTCTCTCTCCCAAACGAGCTCCAAGAGACTTTTACAAGGGGAAAAACTGTAA  119

Query  368  ACCTCCTGGTTTCCACACTCG-TAA--AGGATATGTTGTGCAGCCAGATAAATTGCCAAA  424
            ||||||||||||||||||| |  ||  ||||||||||||||||||| |||||||||||||
Sbjct  120  ACCTCCTGGTTTCCACACTAGAAAAGGAGGATATGTTGTGCAGCCACATAAATTGCCAAA  179

Query  425  CTACGTAGTCCCTGATTTGACTGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTT  484
            ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct  180  CTACGTAGTCCCTGATTTGACCGGCTTTAAGCTGAAACCATATGTCTCACAGTGCCCTTT  239

Query  485  AGACGTCAACAAAACAAACGAGTCAACTGAAGCTTCCAAGTGA  527
            ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct  240  AGACGTCAACAAAACAACCGAGTCAACTGAAGCCTCCAAGTGA  282


> Ahg494010 jgi|Araly1|494010|fgenesh2_kg.7__3443__AT5G39800.1
Length=492

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 240/275 (87%), Gaps = 8/275 (3%)
 Strand=Plus/Plus

Query  257  AGGGTTGTTATTCGGGATTGGAAGAACATTCCGAAGAAAGAGAGCTTCTTCGCTTGATAT  316
            ||| |||||| | |||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct  27   AGGATTGTTAATGGGGATTGGAAGATCATTCAGAAGAAAGAGAGCTTCTTCTCTTGATAT  86

Query  317  TCTCTCTCCCAAACGAGCTCCCAGAGACTTTTACAAGGGAAAAAACTGTAAACCTCCT-G  375
            ||||||||||||| ||||||| |||||||| |||||||| | |||||| ||| ||  | |
Sbjct  87   TCTCTCTCCCAAAAGAGCTCCAAGAGACTTCTACAAGGGCAGAAACTGCAAATCT-TTGG  145

Query  376  GTTTCCACACTCG-TAA--AGGATATGTTGTGCAGCCAGATAAATTGCCAAACTACGTAG  432
            ||||||| ||  |  ||  ||||||||||||||||||| |||||||||| || |||||||
Sbjct  146  GTTTCCATACAAGAAAAGGAGGATATGTTGTGCAGCCAAATAAATTGCCGAATTACGTAG  205

Query  433  TCCCTGATTTGACTGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTTAGACGTCA  492
            |||||||| | || ||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  206  TCCCTGATCTCACCGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTTACAAGTCA  265

Query  493  ACAAAACAAACGAGTCAACTGAAGCTTCCAAGTGA  527
            |||   ||||||||||||| |||||||||||||||
Sbjct  266  ACA---CAAACGAGTCAACCGAAGCTTCCAAGTGA  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19192261267


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5