BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09030.1

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942556 jgi|Araly1|942556|scaffold_603100.1                        606    5e-173


> Ahg942556 jgi|Araly1|942556|scaffold_603100.1
Length=422

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 395/425 (93%), Gaps = 14/425 (3%)
 Strand=Plus/Plus

Query  25   TCTCAAACTACGAAAACTATGGCTTCAAAATCCGTCGTCGTTTTGCTCTTCCTCGCTCTC  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4    TCTCAAACTACGAAAACTATGGCTTCAAAATCCGTCGTCGTTTTGCTCTTCCTCGCTCTC  63

Query  85   ATAGCTTCATCAGCCATAGCTCAAGCTCCAGGACCAGCTCCAACAAGATCTCCTCTTCCA  144
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   ATAGCTTCTTCAGCCATAGCTCAAGCTCCAGGACCAGCTCCAACAAGATCTCCTCTTCCA  123

Query  145  TCTCCTGCTCAACCTCCAAGAACCGCCGCACCAACTCCTTCAATCACACCAACTCCAACT  204
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct  124  TCTCCTGCTCAAGCTCCAAGAACCGCCGCACCAACTCCTTCAATCACACCAACTCC--C-  180

Query  205  CCAACACCATCCGCTACTCCCACGGCGGCTCCAGTTTCTCCTCCGGCTGGTTCACCACTT  264
              | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  181  --A-CACCATCCGCTACTCCCACGGCAGCTCCGGTTTCTCCTCCGGCTGGTTCACCACTT  237

Query  265  CCCTCCTCCGCTTCACCACCCGCTCCTCCAACTTCTCTCACTCCTGATGG-TGCACCTGT  323
            |||||||||||||||||||||||||||||||| ||||||||||| ||||| | | || | 
Sbjct  238  CCCTCCTCCGCTTCACCACCCGCTCCTCCAACATCTCTCACTCCCGATGGAT-CTCCCGC  296

Query  324  CGCTGGTCCGA-CTGGATCCACTCCCGTCGATAACAACAACGCCGCCACTCTCGCTGCTG  382
            |||||| |||| | |||||||||||||||||||| |||  ||||||||||||||| ||||
Sbjct  297  CGCTGGACCGAAC-GGATCCACTCCCGTCGATAAGAACGCCGCCGCCACTCTCGCCGCTG  355

Query  383  GATCTTTAGCCGGATTTGTATTCGTCGCTTCTTTGTT-ACTGTAATTTGGTTATATTTTA  441
            ||||||||||||| |||| |||||||||||||||||| | |||||||||||||| ||| |
Sbjct  356  GATCTTTAGCCGGTTTTGCATTCGTCGCTTCTTTGTTGA-TGTAATTTGGTTAT-TTT-A  412

Query  442  GAATC  446
            |||||
Sbjct  413  GAATC  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21367129840


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5