BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09040.1
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489706 jgi|Araly1|489706|fgenesh2_kg.6__2840__AT4G09040.1 1700 0.0
> Ahg489706 jgi|Araly1|489706|fgenesh2_kg.6__2840__AT4G09040.1
Length=1270
Score = 1700 bits (920), Expect = 0.0
Identities = 1190/1311 (91%), Gaps = 55/1311 (4%)
Strand=Plus/Plus
Query 38 TCTTATCCAAAACTCTCTCAGTCATGGCTCTTCTTCGTCTTCCTGGCATTTCCCTCCAAA 97
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTATCCAAAACTCTCTCACTCATGGCTCTTCTTCGTCTTCCTGGCATTTCCCTCCAAA 60
Query 98 TTCTAGGTCACAAATCAAACCAGAAGAACCCTAATCCC-AATGT-TGC-CTTCACCAATC 154
|||||||||||||||||||||| ||||||||||||||| ||| | | | ||| |||||||
Sbjct 61 TTCTAGGTCACAAATCAAACCACAAGAACCCTAATCCCAAAT-TCT-CACTT-ACCAATC 117
Query 155 ACTCTCTCTCTTTATCTACTCCTTCACTATGTCGTCTCCATCGTCACGCGACGTTTCCAG 214
||||||||||||| |||||| |||||||||||| |||| ||| |||||||||||||||||
Sbjct 118 ACTCTCTCTCTTTCTCTACTTCTTCACTATGTCTTCTCAATCATCACGCGACGTTTCCAG 177
Query 215 ACTCAATTCCAGCAAAATCCAGAAACCTCACTTCGTACTTCTCCACCACAACACAAGAGC 274
| ||||||||| |||||||||||||| |||| | ||||||||| |||||||||||||||
Sbjct 178 ATTCAATTCCATCAAAATCCAGAAACTTCACCACTTACTTCTCCGCCACAACACAAGAGC 237
Query 275 CAGTCCTCGAAtcttcttcttcttcttcttcAGCTCCTGAGGTAGTAGAAGAAGAGATTT 334
||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 238 CAGTCCTCGAA------TCTTCTTCTTCTTCAGCTACTGATGTAGTAGAAGAAGAGATTT 291
Query 335 CTAAAACCAGATTGATTGCTCAGAATGTTCCATGGACATCTACACCTGAAGATATTAGAT 394
||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || |
Sbjct 292 CTAAAACCAGATTAATTGCTCAGAACGTTCCTTGGACCTCTACACCTGAAGATATAAGGT 351
Query 395 CGTTGTTCGAGAAGTACGGGAGTGTTATCGACATTGAGATGTCTATGCATAAGAAGGAAA 454
| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 352 CATTGTTCGAGAAATACGGCAATGTTATCGACATTGAGATGTCTATGCATAAGAAGGAAA 411
Query 455 GAAATAGAGGTTTGGTGTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCAACAGCTCTTA 514
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGAATAGAGGTTTGGTTTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCAACAGCTCTTA 471
Query 515 AATCTCTTGAATCGTGTGAATATGAGGGTCGTCGTTTGAAGGTAGACTATGCAAAGACCA 574
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AATCTCTCGAATCGTATGATTATGAGGGTCGTCGTTTGAAGGTAGACTATGCAAAGACCA 531
Query 575 AAAAGAAGAAGACATATGCGCCGCGTGAGACGCCTTCACCAGTGCCTACATTCAATTTGT 634
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 532 AAAAGAAGAAGACATATGCGCCGCGTGAGAAGCCTTCACCAGTGCCTACATTCAATTTGT 591
Query 635 TTGTTGCAAACTTGGCATTTGAAGCAAGGGCCAAGCATCTTAAGGAGTTCTTTGATGCAG 694
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 592 TCGTTGCAAACTTGGCATTCGAAGCAAGAGCCAAGCATCTTAAGGAGTTCTTTGATGCAG 651
Query 695 ACACTGGTAATGTTGTCTCCACTGAAGTTATATTCCATGAAAATCCAAGGAGGTCGAGTG 754
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ACACTGGTAATGTTGTGTCCACTGAAGTTATATTCCATGAAAATCCAAGGAGGTCGAGTG 711
Query 755 GTTACGGGTTTGTCTCTTTCAAAACCAAGAAACAGGCCGAGGCAGCGCTTATTGAGTTCC 814
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 712 GTTATGGGTTTGTCTCTTTCAAAACCAAGAAACAGGCCGAGGCAGCACTGATTGAGTTCC 771
Query 815 AAGGAAAGGATTTTTTGGGAAGGCCAATCCGATTAGCTAAAAGCAAACAGTTTGTGAAGT 874
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 772 AAGGAAAGGATTTCATGGGAAGACCAATCCGATTAGCTAAAAGCAAACAGTTTGTGAAGT 831
Query 875 TGCAAGCAAAAGAAGGGTTGCAGCCACCAGAGGAGGAAGCAGAGGAGGAACCATCTCAGT 934
|||||||||||||||||||||||||||| | | |||| | |||||||||||||||| |
Sbjct 832 TGCAAGCAAAAGAAGGGTTGCAGCCACC-G-G-AGGA-G--GAGGAGGAACCATCTCCTT 885
Query 935 CTGAGACAATGACCCAAGAGCACGAAACTCCGGCTGCATAAAACTTAGAAGTCTTCGTTG 994
| ||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 886 CCGAGGCAATGACCCAAGAGGTTGAAACTCCGGCTGCATAAAACTGAGAAGTCTTTGTTG 945
Query 995 CAGGATCATTG-T-TGGA-GATATTGGAATTGACGAAGAAGCTTCGAGCTTTTAGGTCTT 1051
|||||| ||| | |||| | |||||||||||| ||| || ||||||| |||
Sbjct 946 CAGGATTATTACTGTGGATG-TATTGGAATTGAAGAA-AA------AGCTTTT----CTT 993
Query 1052 TATTCTTCTTAGTTTTTGACCAACAAGAGGAGTGGGTACATACAAGTAGTACCTACCTTG 1111
||| ||||||||||||||||||||||| | |||||||||||| || ||||||
Sbjct 994 ----CTT---AGTTTTTGACCAACAAGAGGAGTAGATACATACAAGTA---CCAACCTTG 1043
Query 1112 AGTAAATGGTGGAGA-G---GTAAGAAGTACAAGACCGATTTTGTTAGAACTGAAAACTA 1167
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AGTAAATGGTGGAGAAGTAAGTAAGAAGTACAAGACCGATTTTGTTAGAACTGAAAACTA 1103
Query 1168 GTAAGAGACAGGTATTACCAAACGTCAGTATCAGACCAGATCAAATCTCAAGAAACAAAC 1227
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1104 GTA-GAGACCGGTAT-ACCAAACGTCAGTATCAGACCAGATCAAATCTCAAGAAACAACC 1161
Query 1228 TCATGTGGCTCCT-ACGAAACTTGCTTTGTTCAGTT-AAACACAATGCTTCTTTGTTTGT 1285
|||||| ||| | | ||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct 1162 CCATGTGTCTC-TGA-GAAACTTACTTTGTTAAGTTTAAACACAATGCTTCTTTGTTTGT 1219
Query 1286 CATCTACTTTCGATTACTTGTTT--GCGTTTGTTATATGCTTAGTGTGTAA 1334
|||||| |||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1220 CATCTAGTTTCGATTGCTTGTTTTTGCGTTTGTTATATGTTTAGTGTGTAA 1270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5