BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09060.2
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942554 jgi|Araly1|942554|scaffold_603098.1 874 0.0
> Ahg942554 jgi|Araly1|942554|scaffold_603098.1
Length=1070
Score = 874 bits (473), Expect = 0.0
Identities = 514/534 (96%), Gaps = 2/534 (0%)
Strand=Plus/Plus
Query 58 TCTTGTTTCAAGAGTAAACCATGCGGAGCGAGAGAATTGATTCAGATGAAGCAGAAAC-A 116
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 1 TCTTGTTTCAAGAGTAAACCATGCTGAGCGAGAGAATTGATTCAGGTGAAGCAGAAACGA 60
Query 117 AAATCGAGAACAAATCTCTCGCAAGAAGTCGAAGAATATATCAAAGATACAATTGATCAT 176
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GAA-CAAGAACAAATCTCTCGCAAGAAGTCGAAGAATATATCAAAGACACAATTGATCAC 119
Query 177 TCTTTAGGTCTTCCGATCTCCATGGAATCTCTTCAGAAGAAGCTTTATACGGCTGAAGAA 236
|| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TCGTTAGGTCTTCCGATCTCTATGGAAGCTCTTCAGAAGAAGCTTTATACGGCTGAAGAA 179
Query 237 TCTCAACGCCGTCTTCGCGAACAGTATCAGGGTCTGATTTCGCGATTAAAGGAGAAAGAT 296
|||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct 180 TCTCAACGCCGTCTTCGCGAACAGTATCTGGCTTTGGTTTCGCGATTAAAGGAGAAAGAT 239
Query 297 CATGTAATCGATCGTGTTAGGTCTGAAGCGAGTATGAATGCGCAAGCGTTGAAGAAGTTT 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 CATGTAATCGATCGTGTTAGGTCTGAAGCGAGTATGAATGCGCAAGCCTTGAAGAAGTTT 299
Query 357 GTTGAAGAGAATCAGAAATTGGCTAGTGAGTGTGGGAATTTGTTGAGTCAGTGTAAGAAA 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGATGAGAATCAGAAATTGGCTAGTGAGTGTGGGAATTTGTTGAGTCAGTGTAAGAAA 359
Query 417 TTGGAGAAAGAGTGTTTGCTTTATCATCAAGATCGTGATGCGTTGATGGAGTTTGGGAAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGGAGAAAGAGTGTTTGCTTTATCATCAAGATCGTGATGCGTTGATGGAGTTTGGGAAT 419
Query 477 GAATCTGATGAGAGAGCTAGAGAAGCAGAAGCTAGGGTTCGTGAATTGGAGGATGAAATT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAATCTGATGAGAGAGCTAGAGAAGCAGAAGCTAGGGTTCGTGAATTGGAGGATGAAATT 479
Query 537 GGAAGAATGTCTGAGGAAATGCAGAGATTTAAGCGTCAAATCGGAGATGGTGAA 590
||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 480 GGAAGAATGTCTGAGGAAATGCAGATTTTTAAGCGTCAAATTGGAGATGGTGAA 533
Score = 835 bits (452), Expect = 0.0
Identities = 510/537 (95%), Gaps = 7/537 (1%)
Strand=Plus/Plus
Query 668 AGTTGAAAACTGTACTACACCGTTAGAAGAAGATTTGCTTGATTCAGTTTTGGGATCACT 727
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 533 AGTTGAAAACTGCACTACACCGTTAGAAGAAGATTTGCTTGATTCAGTTGTGGGATCACT 592
Query 728 CATAAGCAAAGATGAAACTATAATGGGGCGTCTCTTCTTGGAGGCAAACATCCACGACCA 787
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 593 CATAAGCAAAGATGAAACTATAATGGGACGTCTCTTCTTGGAGGCAAACATCCAAGACCA 652
Query 788 ATCGTGCCAAGCCTTGCTGAGCAAGTGGGATCACTTAAAGCCTTCAACGCAAAAGGTTCT 847
|||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 653 ATCGTGCCAAGCCTTGTTGAGCAAGTGGGATCATTTAAAGCCTTCAATGCAAAAGGTTCT 712
Query 848 TTCTTTAGTTTCAAAG-GCAAAGAAATTCGAAAAGGAAAAAGAATGCATCATCATGAATC 906
|||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 713 TTCTTTAGTTTC-AAGAGCAAAGAAATTTGAAAAGGAAAAAGAATGCATCATCATGAATC 771
Query 907 TCGCTAAAGCTGAGCAAGAGGTGGAACTTGTGAGCACGCTAAACCGAAAGCTGGATAAAG 966
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 772 TCGCTAAAGCCGAGCAAGAGGTGGAACTTGTGAGCACCCTAAACCGAAAGCTGGATAAAG 831
Query 967 AAAATCGTAAGTTGCTAAGG---CAACAACAAAGCCCTCTTTGCTCCGCAGACAAGAACC 1023
|||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||
Sbjct 832 AAAATCGTAAGTTGCTAAGGCAACAACAACAAAGTCCTCTTTGTTCCGCAGACAGGAACC 891
Query 1024 GAAACAGCGCATCTGCAAAGTCAAACAAGAGAAAGAGTCCGAAGACGATGAGTAGCCCGG 1083
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAAACAGCGCATCTGCGAAGTCAAACAAGAGAAAGAGTCCGAAGACGATGAGTAGCCCGG 951
Query 1084 TCGAGAAGAGGCTTGAGTTTAGCAGTCCAGAAATTAGCAGGAAGCCTCTATCACCTGTAT 1143
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 952 TCGAGAAGAGGCTTGAGTTTAGCAGTCCAGAAATCAGCAGGAAGCCTCTATCACCTGTGT 1011
Query 1144 GGAATAACTCACCAGATTCTAAGATGAACAACAATTGATGATAAACAA-AATCAAAC 1199
||||||||||||||||||||| ||||||||| | |||||||| || || ||||||||
Sbjct 1012 GGAATAACTCACCAGATTCTATGATGAACAAGATTTGATGATGAA-AATAATCAAAC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5