BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09070.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481687 jgi|Araly1|481687|fgenesh2_kg.4__747__AT2G28230.1 682 0.0
Ahg894891 jgi|Araly1|894891|Al_scaffold_0006_2887 388 2e-107
> Ahg481687 jgi|Araly1|481687|fgenesh2_kg.4__747__AT2G28230.1
Length=831
Score = 682 bits (369), Expect = 0.0
Identities = 571/668 (85%), Gaps = 16/668 (2%)
Strand=Plus/Plus
Query 1 ATGCCCGTCAAATGGCTTTTGCATTGGCAACCAAATCAGGGATCAACATTTAGCAGCCAA 60
||||| || |||||| |||| |||||||||||||| || ||||||||| | |||||||||
Sbjct 21 ATGCCAGTGAAATGGGTTTTACATTGGCAACCAAACCAAGGATCAACAGTAAGCAGCCAA 80
Query 61 ATCCTAAACGAAGTAACACAAAGCATAGAGAGTC-TCAATGGCGTCAAAGAGGGAACATG 119
||||||||||||||||||||| | ||||||| | ||||||| |||||||| |||| |||
Sbjct 81 ATCCTAAACGAAGTAACACAATGTGTAGAGAG-CATCAATGGTGTCAAAGAAGGAAGATG 139
Query 120 GAAAGCCACTCTCAACTATTACAAACCCATGTTGCAAGATCAGGCGAATCAAGCTGAGTT 179
|||||| |||||||||||||||||||||||||| | ||| || ||||||||| | |||||
Sbjct 140 GAAAGCTACTCTCAACTATTACAAACCCATGTTACGAGACCAAGCGAATCAATCAGAGTT 199
Query 180 CCCGCGTGAATTTGTAGGAATTTCGCTTCCGGAGGAGCCAG-ATAAGTACTATTTCGTCA 238
|| ||||| ||| |||| ||||| ||| |||| |||| | |||||||||||||| | |
Sbjct 200 TCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCC-GAATAAGTACTATTTCATTA 258
Query 239 TCAGGTCGCAAAGGATCGTCG-TGGAAGCAGATTCTTCAATTCAAATGATCATGGAG-AG 296
||||||| || ||||| || | ||||||| |||||||| |||||| |||| |||||| ||
Sbjct 259 TCAGGTCACAGAGGATTGT-GTTGGAAGCTGATTCTTCGATTCAATTGATTATGGAGAAG 317
Query 297 CCTTCAGTCTTACAAATGC-AAACTCT-CGTTTTACTTTGAAGGGCTTGAGTATCAACTT 354
||||||||||| |||| | ||| | | || |||||||||| ||| || ||||||| |||
Sbjct 318 -CTTCAGTCTTATAAAT-CGAAAGT-TGCGCTTTACTTTGATGGGTTTCAGTATCAGCTT 374
Query 355 GGGGATTTTCGTTTGAGAGTTGGTAAAGTTGTTCCTACTCATGCTGAGACCATTAGAGGC 414
|| |||||| | |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 375 GGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTGAGAATGTTAGAGGA 434
Query 415 GTAGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGGAATGGCaaaaaaaTTGATG 474
| ||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||
Sbjct 435 ATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAAGTGATG 494
Query 475 GAGGAGTTCTTGGAGATATGGCAA-GAAGCTATGTCGAAAAGGTCGTTGCCGGGTAAGTT 533
||||||||||||||||||||| || |||||| || | |||||||||||||||||||||||
Sbjct 495 GAGGAGTTCTTGGAGATATGG-AATGAAGCTCTGGCTAAAAGGTCGTTGCCGGGTAAGTT 553
Query 534 TGTGAACAAAGAACTCAACTTTGAAAAGTTTGGACTTGGAGACAACTACACTCCGCAACA 593
|||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 554 TGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACAACTACACTCCACAACA 613
Query 594 TACCGCTGTTGGATATGCTTTCTTCATGGCTAATTTGATGGC-AGCAATTCAAGCTGGGA 652
||||||||| |||||||| || | |||||| | |||| || | | ||||||||| ||
Sbjct 614 CACCGCTGTTCGATATGCTCTCGTGATGGCTCACATGATTGCTACCG-TTCAAGCTGTGA 672
Query 653 GAGGCTAA 660
||||||||
Sbjct 673 GAGGCTAA 680
> Ahg894891 jgi|Araly1|894891|Al_scaffold_0006_2887
Length=321
Score = 388 bits (210), Expect = 2e-107
Identities = 285/322 (89%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 148 ATGTTGCAAGATCAGGCGAATCAAGCTGAGTTCCCGCGTGAATTTGTAGGAATTTCGCTT 207
||||||| ||| ||||| |||||||| |||||||||||||||||| |||| ||||||||
Sbjct 1 ATGTTGCGAGACCAGGCAAATCAAGCGGAGTTCCCGCGTGAATTTCTAGGGGTTTCGCTT 60
Query 208 CCGGAGGAG-CCAGATAAGTACTATTTCGTCATCAGGTCGCAAAGGATCGTCGTGGAAGC 266
|| ||||| | || ||||||||| |||||| |||| ||||| ||||||||||| || ||
Sbjct 61 CCAAAGGAGTCAAG-TAAGTACTACTTCGTCGTCAGATCGCAGAGGATCGTCGTAGATGC 119
Query 267 AGATTCTTCAATTCAAATGATCATGGAGAGCCTTCAGTCTTACAAATGCAAACTCTCGTT 326
|||||| || ||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 120 AGATTCGTCGATTCAAATGATCATGGAGAACCTTGAGTCTTACAAATGCAAGCTCTCGTT 179
Query 327 TTACTTTGAAGGGCTTGAGTATCAACTTGGGGATTTTCGTTTGAGAGTTGGTAAAGTTGT 386
||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 180 TTACTTTGAAGGGTTTCAGTATCAACTTGGTGATTTTCAAGTGAGAGTTGGTAAAGTTGT 239
Query 387 TCCTACTCATGCTGAGACCATTAGAGGCGTAGTCATGGAGGTGGAGTATCTTCCTATATC 446
|||| ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 240 TCCTGCTCATGCCGAGACCGTCAGAGGCATAGTCATGGAGGTGGAGTATCTTCCTATATC 299
Query 447 ATCAATGGGAATGGCaaaaaaa 468
|||||| | |||||||| ||||
Sbjct 300 ATCAATAGAAATGGCAAGAAAA 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5