BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09080.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489783 jgi|Araly1|489783|fgenesh2_kg.6__2917__AT4G09080.1 1893 0.0
Ahg917668 jgi|Araly1|917668|Al_scaffold_0008_2419 876 0.0
> Ahg489783 jgi|Araly1|489783|fgenesh2_kg.6__2917__AT4G09080.1
Length=1422
Score = 1893 bits (1025), Expect = 0.0
Identities = 1312/1446 (91%), Gaps = 37/1446 (3%)
Strand=Plus/Plus
Query 5 ATATagagagaaagaagtgtgagagctacaagtttgaagaaatcgagtagagagagagac 64
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGAGAGAGAAAGAAGTTTAAGAGCTACAAGTTTGAAGAAATCGAGTAGAGAGAGAG-- 58
Query 65 agatctagattcttcttcttcttcgtcttcttcGTCAACCTCTAGAAGACTCGTGTAGGT 124
||||||||| || |||| | |||||||||||||||||||| | ||||||||||||
Sbjct 59 AGATCTAGA----TC--CTTC-T--TCTTCTTCGTCAACCTCTAGGATACTCGTGTAGGT 109
Query 125 TATTGTGATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACA 184
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 110 TATTGTGATGGAAGCTGTGAACGAAGCCGTGAGGAAGATTAAGTCCTTAGTCATTCCACA 169
Query 185 TGCAGATGAGAAAGA-TAATGGTATTGTTTTTGAGATCAAGCTTAATGAGACAGATCAGA 243
| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 170 TTCAGATGAGAAA-ACTAATGGTATTGTTCTTGAGATCAAGCTTGATGAGACAGATCAGA 228
Query 244 GAGT-AG-AAAAGTGGGGTCTTGATCCTTCTTTGG-ATTTTTTCGAGGTAACAGGGAAC- 299
|| | || |||| ||| |||||||||||||||||| || ||| |||||||| ||| |
Sbjct 229 GA-TCAGCAAAA-TGGAGTCTTGATCCTTCTTTGGCCTTGTTT-GAGGTAACTGGG-TCT 284
Query 300 TGTAATTTGGGACGTCC-AAA-TAGCGAGGGATC-TAATCAG-TCTCTCATGGGTTCTGT 355
|||| |||||||| || ||| | |||||| | |||| | ||||||||| || ||||
Sbjct 285 TGTACCTTGGGACG-CCAAAACT-TCGAGGG-CCTTAAT-TGCTCTCTCATGAGTGCTGT 340
Query 356 GACCATTAGGAACATCTTTAATCCTAAGCTGGATGATCTTTTGTCTAAGATTGAGTATGT 415
||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 341 GACCACTAGCAACATCTTCGATCCTAAGCTGGATGATCTTTTGTCTAAGCTTGAGTATGT 400
Query 416 ACGGTTTCTGGAAGCTGTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAA 475
||||| ||| || | || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 401 ACGGTGTCTAGACGGTGATAAAAATCCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAA 460
Query 476 TAGCAGAAAACTTAGCCCAGTGTTCACTGGAGGACCAGGCTATGAGGATCTAGTGCCTCC 535
||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||
Sbjct 461 CAGCAGAAAACTTAGCCCTGTGTTCACTGGGGGACCAGGCTTTGAGGAAGTAGTGCCTCC 520
Query 536 AATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAG 595
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AATGTTTCTGGCTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAG 580
Query 596 AGAACTCACATATGGAGTTATGTTTGAAGAGATAATAACCCGAGATGAAAACAGGCGAA- 654
|||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||
Sbjct 581 AGAATTCACATATGGAGTTATGTTGGAAGAGATAATAGCCCAAGATGAAAACAGG-AAAG 639
Query 655 TCTCTGAAAATGGGCTCTTGTTATCGCCTGA-CGGTGGAATCAGTATTAATGGACCTCCA 713
|||||| ||||||||| | ||| |||||| | ||||||||||||| ||||||||||||||
Sbjct 640 TCTCTGTAAATGGGCTGTCGTTTTCGCCT-AGCGGTGGAATCAGTGTTAATGGACCTCCA 698
Query 714 ACAACTCTAAGTGGTACCGGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGA 773
||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 699 ACAACTCTAAGTGGTACTGGTATTGACCGCATAGCCTCTCTACAAGCCAACATAACCCGA 758
Query 774 GACAACACCAAGCTAGTGAATGGGGCTGTTGTTGGAGAGAAGAATATCTTTCAGGTGGAT 833
|||||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 759 GACAACACCAAGCTTGTGAATGGGGCTATTGTTGGAGAGAGGAATGTCTTTCAGGTGGAT 818
Query 834 CAAGGCTTAGGTATAGGAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCA-TTAAC 892
|||||||| |||||||||| ||||| ||||||||||||||||| |||||| || || ||
Sbjct 819 CAAGGCTTGGGTATAGGAAGCAATTTCCCGCTCTTCAACCGCCATCAACTAACACTT-AC 877
Query 893 AAGTTTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGATAAACCACAACCACCAGTTCT 952
||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 878 AAGATTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGGTAATCCACGACCACCAGTTCT 937
Query 953 AGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGC 1012
||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 938 AGTCCTCCACGGTCATTACGGTGGCTGCATAGGCGATCTTCCAAACTATGATGCTTTTGC 997
Query 1013 TCTTGGTGGACCTAACTCCGTTCGAGGATACAGCATGGGAGAACTTGGTGCAGCTAAAAA 1072
|||||||||||||||||| |||||||| |||||||| ||||| || |||||||||||| |
Sbjct 998 TCTTGGTGGACCTAACTCTGTTCGAGGCTACAGCATCGGAGAGCTCGGTGCAGCTAAACA 1057
Query 1073 CATTCTCGAGCTTGGTGCTGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCATT 1132
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 1058 CATTCTCGAGCTTAGTGCTGAGATTAGAATCCCTGTGAAGAACACACATGTTTATACATT 1117
Query 1133 TGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAG-GGC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1118 TGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCGACAGCGG- 1176
Query 1192 TTTACAGGAAAATGGGACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGC 1251
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1177 TTTACCGGAAAATGGGACATGGTTCATCGTACGGTTTGGGTGTGAAACTCGGTAAGGTGC 1236
Query 1252 GAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGTTCGGGG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1237 GAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGCTCGGAG 1296
Query 1312 AGAGATACTAAGGTCATGCCATGAAGACTTTGTGCTGCTTTCTTTCTTAACTCTAATACT 1371
||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1297 AGAGATACTAAAGTGATGCCCTGAAGACTTTGTGCTCCTTCCTTTCTTAACTCTAATACT 1356
Query 1372 TTGGTTTATAATCCTGATACTCTAGTTATGTAAATGCGTGCATAGCAAGTCATTGAGTTT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 TTGGTTTATAATCCTGATACTCTAGTTATGTAAATGCGTGCATAGCAAGTCATTGAGTTT 1416
Query 1432 AGGCAT 1437
| ||||
Sbjct 1417 AAGCAT 1422
> Ahg917668 jgi|Araly1|917668|Al_scaffold_0008_2419
Length=2538
Score = 876 bits (474), Expect = 0.0
Identities = 842/1017 (83%), Gaps = 35/1017 (3%)
Strand=Plus/Plus
Query 325 AGGGATC-TAATCAG-TCTCTCATGGGTTCTGTGACCATTAGGAACATCTTTAATCCTAA 382
|||| || ||||| | |||||||| ||||| || |||| ||| ||| |||| |||||| |
Sbjct 1538 AGGG-TCTTAATC-GATCTCTCATTGGTTCAGTAACCACTAGTAACTTCTTGAATCCTGA 1595
Query 383 GCTGGATGATCTTTTGTCTAAGATTGAGTATGT--A-CGGTTTCTGGAAGCTGTTAAAAA 439
|| ||||||||||| || |||| |||||||||| | | | ||| || | |||||| ||
Sbjct 1596 GCAGGATGATCTTTCGTTTAAGCTTGAGTATGTACACCCATATCTAGACGGTGTTAACAA 1655
Query 440 ACCTAGAAACCGTACCTTCAAAACGAGCT-TCTTCAATAGCAGAAAACTTAGCCCAGTGT 498
|||||||||||||||||||||||||| | ||||||| || || ||||||||||||||||
Sbjct 1656 TCCTAGAAACCGTACCTTCAAAACGAG-TATCTTCAACAGTAGTAAACTTAGCCCAGTGT 1714
Query 499 TCACTGGAGGACCAGGCTATGAGG-ATCTAGTGCCTCCAATGTTTGTGGGTCGAGATTGT 557
|||||||||| || || | ||||| | | |||| ||||||| || |||| ||||| | ||
Sbjct 1715 TCACTGGAGGCCCTGGATTTGAGGAAGC-AGTGGCTCCAATCTTGGTGGATCGAGCTGGT 1773
Query 558 CTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAG-AGAACTCACATATGGAGTTAT 616
| |||||||||||||||||| |||| || |||||||| | || | |||||||||||| |
Sbjct 1774 GTGAAAGCTACTATAACTGAGGACTTCACACGTCAGAGTA-AATTAACATATGGAGTTGT 1832
Query 617 GTTTGAAGAGATAATAACCCGAGATGAAAACAGGCGAATCTCTGAAAATGGGC-TCTTGT 675
||| |||||||||| ||| ||||||||||| || ||||||| |||||| | || |
Sbjct 1833 GTTGGAAGAGATAACAACTAGAGATGAAAACGGGAAAATCTCTTCAAATGGTCAGGTT-T 1891
Query 676 TATCGCCTGACGGTGGAATCAGTATTAATGGACCTCCAACAACTCTAAGTGGTACCGGTA 735
||| ||| | || ||||||| | |||||||||||||||||||||| |||||||| ||||
Sbjct 1892 TATTACCTAATGGAGGAATCAATGTTAATGGACCTCCAACAACTCTCAGTGGTACTGGTA 1951
Query 736 TTGACCACATTGCCACTCTACAAGCCAACATAACCCGAGACAACACCAAGCTAGTGAATG 795
|||| | | ||| |||||||| || ||||||| ||||||||||||| | |||||||
Sbjct 1952 TTGATCGTGTAGCCTTTCTACAAGGTAATATAACCCAAGACAACACCAAGTTTGTGAATG 2011
Query 796 GGGCTGTTGTTGGAGAGAAGAATATCTTTCAGGTGGATCAAGGCTTAGGTATAGGAAATA 855
||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||| |
Sbjct 2012 TAGCTATTGTCGGAGATAGGAAGATCTTTCAGGTGGATCAAGGCTTAGGTATAGGAAGCA 2071
Query 856 ATTTTCCGCTCTTCAACCGCCACCAACTATCATTAAC-AAGTTTCATT-CAGCTGAAG-C 912
||| || |||||||||||||| |||||| | ||||| || ||| ||| || ||| || |
Sbjct 2072 ATTCCCCACTCTTCAACCGCCATCAACTAACTTTAACAAAATTT-ATTCCA-CTG-AGAC 2128
Query 913 AAGTAGAAGAAGGAT-CCGATAAACCACAACCACCAGTTCTAGTCCTCCATGGTCGTTAC 971
||||||||||||| | ||| |||||| ||||||||||||||||| |||||||| | ||||
Sbjct 2129 AAGTAGAAGAAGG-TCCCGGTAAACCGCAACCACCAGTTCTAGTTCTCCATGGCCATTAC 2187
Query 972 GGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGCTCTTGGTGGACCTAACTCC 1031
| ||| || |||| ||||| || | ||||||| |||||||||||| || ||||||||
Sbjct 2188 GCTGGATGTGTAGGTGATCTACCTGGATATGATGCTTTTGCTCTTGGAGGTCCTAACTCT 2247
Query 1032 GTTCGAGGATACAGC-ATGGGAGAACTTGGTGCAGCTAAAAACATTCTCGAGCTTGGTGC 1090
|||||||| |||| | | |||||| || |||||||||| ||||||| ||||| |||||||
Sbjct 2248 GTTCGAGGTTACA-CTAAGGGAGAGCTCGGTGCAGCTAGAAACATTGTCGAGGTTGGTGC 2306
Query 1091 TGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCATTTGCTGAGCATGGAAACGA 1150
|||| ||||| | ||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2307 TGAGGTTAGAGTACCTATAAAGAACACACAAGTGTATGCATTTGCTGAGCATGGAAACGA 2366
Query 1151 TTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAG-GGCTTTACAGGA-AAATGGGA 1208
||||||||| ||||||||||||||||| ||||| || | |||||| ||| | ||| ||||
Sbjct 2367 TTTGGGAAGCTCAAAGGATGTGAAAGGAAATCCGACCGCGGCTTT-CAGAAGAAA-GGGA 2424
Query 1209 CATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGT-ATGGTGCGAGCTGAATATACTGT 1267
||||||||||| |||||| ||||||||||||| ||| | | | |||||||||||| ||||
Sbjct 2425 CATGGTTCATCTTATGGTGTGGGTGTGAAACTTGGTCA-GATACGAGCTGAATATGCTGT 2483
Query 1268 ACG-TCACAATCGTGGAACCGGTGCTCTGTTTCT-CAGGTTCGGGGAGAGATACTAA 1322
| ||||||| |||||||||||||||||| ||| ||| ||||| || ||||| |||
Sbjct 2484 T-GATCACAATTGTGGAACCGGTGCTCTGTCTCTTCAG-TTCGGAGAAAGATATTAA 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5