BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09100.1

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942690 jgi|Araly1|942690|scaffold_603234.1                        608    8e-174


> Ahg942690 jgi|Araly1|942690|scaffold_603234.1
Length=445

 Score =  608 bits (329),  Expect = 8e-174
 Identities = 377/400 (94%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  1    ATGTCATACTTCAAAAGAAACGAAGGAACAATTGTGTTTGCGTTTGCGAGCATCGGGTTC  60
            ||||||||||| ||||||||||||||| ||||||| |||||||| || ||  ||||||||
Sbjct  22   ATGTCATACTTTAAAAGAAACGAAGGAGCAATTGTTTTTGCGTTAGCAAGTGTCGGGTTC  81

Query  61   ATAGCGTTTTATAT-CATTAATTACTACATTCGGCGATGCAGAAACC-GTGCCGCAGCAG  118
            |||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  82   ATAGCGTTTTAT-TGCATTAATTACTACATTCGGCGATGCAGAAACCAG-GCCGCAGCAG  139

Query  119  CCGGGGACATTGAGGAAGCTCGAATGAGTCCGAGGAGGCCACCGCGAGGACTTGACGCTG  178
            ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  140  CCGGGGACAGTGAGGAAGCTCGAATGAGTCCGAGGAGGCCACCGCGAGGGCTTGACCCTG  199

Query  179  AAGCCATCAAGTCGTTTCCTTCATTCGTTTACACGGAAGCTAGAGGAATTGAGCCAGGAA  238
            |||||||| ||||||||||||| ||| |||||||  |||||||||| |||||||||||||
Sbjct  200  AAGCCATCGAGTCGTTTCCTTCTTTCATTTACACAAAAGCTAGAGGGATTGAGCCAGGAA  259

Query  239  TAGGCGAGCTAGAATGTGTTGTGTGTTTGAATGAATTCAAAGACGATGAAACGCTGCGTT  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  260  TAGGCGAGCTAGAATGTGTTGTGTGTTTGAATGAATTCAAAGACGATGAAACGCTGCGTT  319

Query  299  TGGTACCACCTTGTGTACATGTGTTTCATGCTGACTGTGTAGACATCTGGCTTTCTCATA  358
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  320  TGGTACCACCTTGTGTACATGTGTTTCATGCTGACTGTGTAGACATTTGGCTTTCTCATA  379

Query  359  GCTCCACATGTCCTATCTGTCGTGCTAAAGTAGTTCCTTA  398
            |||||||||||||||||||||||||||| |||| ||||||
Sbjct  380  GCTCCACATGTCCTATCTGTCGTGCTAATGTAGCTCCTTA  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14308345875


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5