BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09110.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1 946 0.0
Ahg942695 jgi|Araly1|942695|scaffold_603239.1 599 1e-170
Ahg942692 jgi|Araly1|942692|scaffold_603236.1 538 3e-152
Ahg942696 jgi|Araly1|942696|scaffold_603240.1 359 2e-98
> Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1
Length=725
Score = 946 bits (512), Expect = 0.0
Identities = 660/730 (90%), Gaps = 16/730 (2%)
Strand=Plus/Plus
Query 1 ATGACTATATTCGCGAGAGATCTCATCTATAGGATCGAAACGAA-GGTTTTGTTGCCGCT 59
||| |||| ||||||||||||||||||||| |||||||| | || |||||||||||||||
Sbjct 1 ATGGCTATCTTCGCGAGAGATCTCATCTATGGGATCGAAGC-AAGGGTTTTGTTGCCGCT 59
Query 60 CTTCCTTGTCCATTTGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGACCG 119
||||||||||||||| || ||||| ||||||||||| ||||||||| |||||| ||||||
Sbjct 60 CTTCCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCCGCAGACCG 119
Query 120 CAATAGAAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCATTGTGCTTGCAATATT 179
||| ||||| |||||||| || |||||| ||||||| |||||||||| ||||||||| ||
Sbjct 120 CAACAGAAATACCAATTTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTT 179
Query 180 TATCTCATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAGGTTGA 239
||||||| ||| || | ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 180 TATCTCAATAACCACGCTCGCTTGTTTCTTGCACAACACATTCTATAGAGCAGAGCTTGA 239
Query 240 GGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAACTCGT 299
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 240 GGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAACTCAT 299
Query 300 TGAGTCCTTTCCAATT-TTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAAAGGCG 358
||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 300 CGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAGGCG 358
Query 359 GAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTGGATGC 418
|||| ||||||||||||||||| || ||||||| |||| ||||||| |||||||||||||
Sbjct 359 GAGTCGAATGTGCAATTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
Query 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTCAGTCCA 478
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCGGTCCA 478
Query 479 CATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATCCATATCC 536
||||||||| || ||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 479 CATGTCCGGTCT-GTCGTGCAAATCTGTCTCTCAAACCTTGTGAAAGCTT-TCCATATCC 536
Query 537 GATCACGGATCTTGAAACGGGAAATGAAC-AA-AGA-G-A-T-GAACATTCATTGCTTCA 590
||||| |||||||||||| ||||||| || || ||| | | | |||| ||||||||||||
Sbjct 537 GATCATGGATCTTGAAACAGGAAATGCACGAAGAGATGTACTAGAACGTTCATTGCTTCA 596
Query 591 ACTAGGTACGAATCTAGATCGATTCACACTTCAGTTACCAGAGGAGATGCAAAGACA-AT 649
|||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| | ||
Sbjct 597 ACTAGGTAAGAATCTAGATCGGTTCACACTACAGTTACCAAAGGAGATGCAAAGA-AGAT 655
Query 650 TGGTTAGCTTGAATCTGATAAGGACAAGCAACATGACCTTACCTCGAGCCATGAGTTCGA 709
|||||||||||||||||||||||| || |||| | ||||||||||||||||||||||||
Sbjct 656 TGGTTAGCTTGAATCTGATAAGGATGAGAAACACGGCCTTACCTCGAGCCATGAGTTCGA 715
Query 710 GACAGGGCTA 719
||||||||||
Sbjct 716 GACAGGGCTA 725
> Ahg942695 jgi|Araly1|942695|scaffold_603239.1
Length=1003
Score = 599 bits (324), Expect = 1e-170
Identities = 489/567 (86%), Gaps = 18/567 (3%)
Strand=Plus/Plus
Query 1 ATGACTATATTCGCGAGAGATCTCATCTAT-AGGATCGAAACGAAG-GTTTTGTTGCCGC 58
|||||||| || |||||||||||||||||| | |||| || ||| ||||||||||||
Sbjct 21 ATGACTATCTTTGCGAGAGATCTCATCTATCA-AATCGTTAC-AAGAATTTTGTTGCCGC 78
Query 59 TCTTCCTTGT-CCATT-TGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGA 116
|||||||| | ||||| | || ||||| ||||| ||||| |||| ||| ||||||| |||
Sbjct 79 TCTTCCTT-TCCCATTAT-TTGCCTTACGTAACCTGCCAACAAGTGTCGGAATCCGCAGA 136
Query 117 CCGCAATAGAAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCAT-TG-TGCTTGCA 174
|||||||| |||||| ||| ||||| ||||||||||||| ||||| | || | ||||||
Sbjct 137 CCGCAATAAAAAAACAAATCTCCCAGCGGAAACGGTAATTGCAAT--TGTGATTCTTGCA 194
Query 175 ATATTTATCTCATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAG 234
||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| ||||||
Sbjct 195 TTATTTATCTCATTAAGCATCGTCGCTTGTTGCTTGCACAACACATTGTATAGCGCAGAG 254
Query 235 GTTGAGGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAA 294
||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||
Sbjct 255 ATTGAGGCGGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAGAAGGAA 314
Query 295 CTCGTTGAGTCCTTTCCAAT-TTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAA 353
|| | ||||| ||||| || |||||| ||||| || |||||||| ||||||| ||||||
Sbjct 315 GTCATCGAGTCTTTTCC-ATCTTTCCTTTATTCAGAAGTTAAAGGACTCAAGACAGGCAA 373
Query 354 AGGCGGAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTG 413
||||||||||||||||||| ||||||| || ||||||| |||| ||||||| ||||||||
Sbjct 374 AGGCGGAGTAGAATGTGCAGTTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTG 433
Query 414 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTC- 472
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 434 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCCG 493
Query 473 AGTCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCA 531
| ||||| || |||| || ||||||| |||||||||| |||||| ||||||| ||||
Sbjct 494 A-TCCACCTGCCCGGTCT-GTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTTCCA 551
Query 532 TATCCGATCACGGATCTTGAAACGGGA 558
||||||| || |||| |||||||||||
Sbjct 552 TATCCGAACATGGATGTTGAAACGGGA 578
Score = 213 bits (115), Expect = 2e-54
Identities = 209/251 (83%), Gaps = 19/251 (8%)
Strand=Plus/Plus
Query 576 ACATTCATTGCTTCAACTAGGT-ACGAATCTAGATCGATTCACACTT-CAGTTACCAGAG 633
|||||||||| ||||||||||| | |||||||| || |||||| || || ||||| |||
Sbjct 734 ACATTCATTGGTTCAACTAGGTGA-AAATCTAGACCGGTTCACA-TTGCAATTACCGGAG 791
Query 634 GA-GATGCAAAGACAATTGGTTAGCTTGAATCTGATAAGGACAAG-CAACATGACCTTAC 691
|| | ||||||| |||||||||||||||||||||||||||| ||| ||| ||| ||||||
Sbjct 792 GATG-TGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAA-ATGGCCTTAC 849
Query 692 CTCGAGCCATGAGTTCGAGACAGGGCTACAGAAGCG-G--T--TT-CTCTCATGGACGAC 745
||| |||||||||||||||||||||||||||||||| | | || | |||| || || |
Sbjct 850 CTCAAGCCATGAGTTCGAGACAGGGCTACAGAAGCGAGAGTGGTTTCCCTCAGGGTCGGC 909
Query 746 AAA--CACTTCGGCGGGCCATATCTATGTCTCTAAGTTTCTCTTTA-CAAGCTGCTTCTG 802
||| ||| ||||||||| ||||||||||||| | ||||| ||| ||| || ||||||
Sbjct 910 AAATGCAC--CGGCGGGCCTTATCTATGTCTCTTACTTTCTTTTTTTCAAACTACTTCTG 967
Query 803 TTCGTTCCACA 813
|||| || |||
Sbjct 968 TTCGGTCAACA 978
> Ahg942692 jgi|Araly1|942692|scaffold_603236.1
Length=1093
Score = 538 bits (291), Expect = 3e-152
Identities = 477/566 (84%), Gaps = 16/566 (3%)
Strand=Plus/Plus
Query 1 ATGACTATATTCGCGAGAGATC-TCATCTATAGGATCGAAACGAAG-GTTTTGTTGCCGC 58
|||| ||| ||| ||||| ||| | || || || ||| | | ||| ||| | |||||||
Sbjct 21 ATGAATATCTTCACGAGATATCGCCTTC-ATCGGGTCGTATC-AAGTGTTATATTGCCGC 78
Query 59 TCTTCCTTGTCCAT-TTGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGA- 116
|||||||| ||||| || || ||||| || ||||||||||||||||| | ||||| | |
Sbjct 79 TCTTCCTTTTCCATCTT-TTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCCGCAAAG 137
Query 117 CCGCAATAG-AAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCATTGTGCTTGCAA 175
|| ||| | | ||||| ||||| | || ||| || | ||||||||| || |||||||||
Sbjct 138 CC-TAAT-GTACAAACCGATTTCTCGACAGAATCGATTATCGCAATCGTTATGCTTGCAA 195
Query 176 TATTTATCT-CATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAG 234
||||||| | |||||||||||||| |||||| ||||||| ||||||||||| ||||||
Sbjct 196 TATTTAT-TACATTAAGCATGGTCTCTTGTTGCTTGCACTGCACATTCTATAGGGCAGAG 254
Query 235 GTTGAGGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAA 294
||||||||| ||||||||||||| |||| ||| || ||||| |||||||||||||||
Sbjct 255 ACCGAGGCGGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAGAAGGAA 314
Query 295 CTCGTTGAGTCCTTTCCAATTTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAAA 354
|| | ||||| ||||| ||||||| ||||| || ||||||||||||||||||||||||
Sbjct 315 GTCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAA 374
Query 355 GGCGGAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTGG 414
||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||
Sbjct 375 GGCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATCAAGAAACGCTACGTTGG 434
Query 415 ATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTC-A 473
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 435 ATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCCGA 494
Query 474 GTCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCAT 532
||||| || |||| || ||||||||||||||||| | |||||| ||||||| |||||
Sbjct 495 -TCCACCTGCCCGGTCT-GTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTTTTCCAT 552
Query 533 ATCCGATCACGGATCTTGAAACGGGA 558
|||| | || |||| |||||||||||
Sbjct 553 ATCCAAACATGGATGTTGAAACGGGA 578
Score = 189 bits (102), Expect = 3e-47
Identities = 137/154 (89%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 576 ACATTCATTGCTTCAACTAGGT-ACGAATCTAGATCGATTCACACTTCAGTTACCAGAGG 634
|||||||||| ||||||||||| | |||||||| |||||||| || || ||||| ||||
Sbjct 716 ACATTCATTGGTTCAACTAGGTGA-AAATCTAGACCGATTCACTCTGCAATTACCGGAGG 774
Query 635 AGATGCAAAGACAATTGGTTAGCTTGAATCTGATAAGGACAAGCAACATGACCTTACCTC 694
|| |||| ||||||||||||||||||||||| || |||| |||| ||||| |||||||||
Sbjct 775 AGGTGCAGAGACAATTGGTTAGCTTGAATCTAATCAGGAGAAGCCACATGGCCTTACCTC 834
Query 695 GAGCCATGAGTTCGAGACAGGGCTACAGAAGCGG 728
|||||||||||||||||||||||||||||||||
Sbjct 835 AAGCCATGAGTTCGAGACAGGGCTACAGAAGCGG 868
> Ahg942696 jgi|Araly1|942696|scaffold_603240.1
Length=1108
Score = 359 bits (194), Expect = 2e-98
Identities = 290/336 (86%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 231 AGAGGTTGAGGC-GGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGA 289
|||| ||||||| || | | || ||||||| |||||||||| |||| ||||| | || |
Sbjct 236 AGAGATTGAGGCAGG-AGGTCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACA 294
Query 290 AGGAACTCGTTGAGTCCTTTCCAATTTTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAG 349
|||| || | ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 295 AGGATGTCATCGAGTCCTTTCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAG 354
Query 350 GCAAAGGCGGAGTAGAATGTGCAATTTGTCT-AAGCGAGTTTGTGGATAAAGAAACACTA 408
|||||||||||||||||||||||||||| || ||||||||||| |||| |||| | |||
Sbjct 355 GCAAAGGCGGAGTAGAATGTGCAATTTG-CTTAAGCGAGTTTGAGGATGAAGAGTCGCTA 413
Query 409 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCT 468
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 414 CGTTGGATGCCTCCTTGTAGCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCT 473
Query 469 TCTCAGTCCACATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TT 526
|||| ||| |||||||| | || |||||||| || ||||||| |||||||||||||| ||
Sbjct 474 TCTCGGTCTACATGTCCAGTCT-GTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTT 532
Query 527 ATCCATATCCGATCACGGATCTTGAAACGGGAAATG 562
||||||||| | || |||| ||||||| |||||||
Sbjct 533 -TCCATATCCAAGCATGGATATTGAAACAGGAAATG 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5