BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09120.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942692 jgi|Araly1|942692|scaffold_603236.1 1210 0.0
Ahg942695 jgi|Araly1|942695|scaffold_603239.1 861 0.0
Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1 529 2e-149
Ahg942696 jgi|Araly1|942696|scaffold_603240.1 368 4e-101
Ahg942693 jgi|Araly1|942693|scaffold_603237.1 291 9e-78
> Ahg942692 jgi|Araly1|942692|scaffold_603236.1
Length=1093
Score = 1210 bits (655), Expect = 0.0
Identities = 937/1067 (88%), Gaps = 43/1067 (4%)
Strand=Plus/Plus
Query 1 ATGAATATCTTCACGAGATATCACCTTCCTCGGGTCGTATCAGGTGTTATATTGCCGCTC 60
|||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 21 ATGAATATCTTCACGAGATATCGCCTTCATCGGGTCGTATCAAGTGTTATATTGCCGCTC 80
Query 61 TTCCTTTTCCATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-CCAACAAACAG 119
|||||||||||||||||||||||||||||||| ||||||||||||| | || | || ||
Sbjct 81 TTCCTTTTCCATCTTTTGCCTTACGTTACATGCCAGCAAGAGTCGGGATCC-GC-AA-AG 137
Query 120 CATTA-G-ACAAACCAATCTCTCAG-CTGACTCAATAATTGCAATCGTTGTGCTTGCAAT 176
| | | | ||||||| || |||| | | || || || || ||||||||| ||||||||||
Sbjct 138 CCTAATGTACAAACCGATTTCTC-GACAGAATCGATTATCGCAATCGTTATGCTTGCAAT 196
Query 177 ATTTA-TATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGA 235
||||| || ||||| ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 197 ATTTATTA-CATTAAGCATGGTCTCTTGTTGCTTGCACTGCACATTCTATAGGGCAGAGA 255
Query 236 TTGGGGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAGGAAG 295
| ||||||||| ||||| || || |||| ||| |||||||| ||||||||||||||||
Sbjct 256 CCGAGGCGGCAGGCCAAGAAGTGTTGCACAATAGGGCAAGGCGCGGGCTCGAGAAGGAAG 315
Query 296 TCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAG 355
|||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 316 TCATCGAGTCATTTCCGGTTTTCCTGTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAG 375
Query 356 GCGGTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTACGTTGGA 415
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 376 GCGGAGTAGAATGTGCAATTTGTCTAAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGA 435
Query 416 TGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTTGGT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 436 TGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCCCGAT 495
Query 476 CCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTATCCATATC 535
|||| || ||||| |||||||||||||||||| | |||||| ||||||| ||||||||
Sbjct 496 CCACCTGCCCGGTCTGTCGTGCAAATCTGTCTTTGAAACCCAACGAGAGTTTTCCATATC 555
Query 536 TGAACATGGATGTTGAAACGGGAGGTGTTCAAAAACTCCCCAATGAGAGAAGCTTGACAG 595
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 556 CAAACATGGATGTTGAAACGGGAGGTGTTCAAGAACCCCCCAATGAGAGAAGCTTGATAG 615
Query 596 GTAATAGTG----T-A-ACAAC---TAGATCGAGATCTACAGGGT-TATTGTCGAGCTGG 645
|||||| || | | ||||| | ||||||| |||||||| | ||||| | | ||||
Sbjct 616 GTAATATTGCAAATTATACAACACCTCGATCGAGGTCTACAGG-TCTATTGGCAAACTGG 674
Query 646 CGTATGGCTGAGATATTCGTCCCTAGATCTCATTCGACCGGACATTCATTGGTTCAACAA 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AAAATGGCTGAGATATTCGTCCCTAGATCTCATTCGACCGGACATTCATTGGTTCAAC-- 732
Query 706 CTAGGTGAAAATCTAGACCGGTTCACAT-TGCAATTACCAGAGGAGGTACAAAGACAATT 764
||||||||||||||||||| ||||| | |||||||||| |||||||| || ||||||||
Sbjct 733 -TAGGTGAAAATCTAGACCGATTCAC-TCTGCAATTACCGGAGGAGGTGCAGAGACAATT 790
Query 765 AGTTAGCTTGAATCTGATAAGGAGAAGCCACATAGTCTTACCTCAAGCCGTGAGTTCGAG 824
|||||||||||||| || |||||||||||||| | ||||||||||||| ||||||||||
Sbjct 791 GGTTAGCTTGAATCTAATCAGGAGAAGCCACATGGCCTTACCTCAAGCCATGAGTTCGAG 850
Query 825 GCAGGGCTACAGGAGCGGGAGCGTTGGGAGCGAGAGAGGTGGTTTCTCTCAGGGACGGCA 884
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 851 ACAGGGCTACAGAAGCGGGAGCGTTGGGAGCGAGAGAGGTGGTTTCTCTGAGGGACGGCA 910
Query 885 AACGCACC-GAAGGGCCTTATCTATGTCTTTCTCTTTCTCTTTCCAAACTGCTTCTGTTC 943
|||||| | | ||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 911 AACGCATCTGC-GGGCCTTATCTATGTCTCTCTCTTTCTCTTTTCAAACTACTTCTGTTA 969
Query 944 GGTCAATACATGACATGAATGATCAAGCCCAAG---CT----AAG----G-ACAAATATT 991
|||||| || ||||| ||||||||||| ||||| || ||| | |||||||||
Sbjct 970 GGTCAACACGTGACAGGAATGATCAAGTCCAAGAGACTTCCCAAGCCAAGGACAAATATT 1029
Query 992 TTGGTGAACGGTCATTTGAACGCCTTATGCCAGAGGAGAAGGTCTAA 1038
||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1030 TTGGTGAACGGTCATTTGAACGCCTCATGCCAGAG-AG--GGTCTAA 1073
> Ahg942695 jgi|Araly1|942695|scaffold_603239.1
Length=1003
Score = 861 bits (466), Expect = 0.0
Identities = 803/957 (84%), Gaps = 57/957 (6%)
Strand=Plus/Plus
Query 52 TTGCCGCTCTTCCTTTTCCATCT-TTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-C 109
|||||||||||||||| |||| | |||||||||||| || || || |||| ||||| | |
Sbjct 72 TTGCCGCTCTTCCTTTCCCAT-TATTTGCCTTACGTAACCTGCCAACAAGTGTCGGAATC 130
Query 110 CAACAAACAGCATTAGACAAACCAATCTCTCAGCTGACTCAATAATTGCAATCGTTG-TG 168
| || || ||| || | |||| |||||| |||| || | |||||||||| | || |
Sbjct 131 C-GCAGACCGCAATAAAAAAACAAATCTCCCAGCGGAAACGGTAATTGCAATTG-TGATT 188
Query 169 CTTGCAATATTTATATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGG 228
|||||| ||||||| |||||| |||| ||| |||||||||||||| || ||| |||||
Sbjct 189 CTTGCATTATTTATCTCATTAAGCATCGTCGCTTGTTGCTTGCACAACACATTGTATAGC 248
Query 229 GAAGAGATTGGGGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAG 288
| |||||||| ||||||| | ||||| || || |||| |||||| |||| ||||| |||
Sbjct 249 GCAGAGATTGAGGCGGCAAGCCAAGAAGTGTTGCACACTAGAGCGAGGCACGGGCTTGAG 308
Query 289 AAGGAAGTCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATA 348
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 309 AAGGAAGTCATCGAGTCTTTTCCATCTTTCCTTTATTCAGAAGTTAAAGGACTCAAGACA 368
Query 349 GGCAAAGGCGGTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTA 408
||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 369 GGCAAAGGCGGAGTAGAATGTGCAGTTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTA 428
Query 409 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCT 488
Query 469 TCTTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAGTTAT 528
|| | ||||| || ||||| |||||||| |||||||||| |||||| ||||||| |
Sbjct 489 TCCCGATCCACCTGCCCGGTCTGTCGTGCGAATCTGTCTCAGAAACCCAACGAGAGTTTT 548
Query 529 CCATATCTGAACATGGATGTTGAAACGGGAGGTGTTCAAAAACTCCCCAATGAGAGAA-- 586
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 549 CCATATCCGAACATGGATGTTGAAACGGGAGGTGTTCAAGAACCCCCCAATGAGAGAAGC 608
Query 587 --G-C---------T-TGACA-GG--TAATAGTG-----TA-AC-A-A-CTAGATCGAGA 621
| | | ||||| || ||||| || || || | | || | ||||||
Sbjct 609 TTGACATGTAATAGTGTGACATGGAATAATAATGCAAATTATACAACACCTCGGTCGAGA 668
Query 622 TCTACAGGGTTATTGTCGAGCTGGCGTATGGCTGAGATATTCGTCCCTAGATCTCATTCG 681
|||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 669 TCTACAGGGTTACCGTCGAACTGGCGTATGGCTGAGATATTCTTCCCTAGATCTCATACG 728
Query 682 ACCGGACATTCATTGGTTCAACAACTAGGTGAAAATCTAGACCGGTTCACATTGCAATTA 741
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 729 ACCGGACATTCATTGGTT---CAACTAGGTGAAAATCTAGACCGGTTCACATTGCAATTA 785
Query 742 CCAGAGGAGGTACAAAGACAATTAGTTAGCTTGAATCTGATAAGGAGAAGCCACATAGTC 801
|| ||||| || ||||| ||||| ||||||||||||||||||||||||||||| || | |
Sbjct 786 CCGGAGGATGTGCAAAGTCAATTGGTTAGCTTGAATCTGATAAGGAGAAGCCAAATGGCC 845
Query 802 TTACCTCAAGCCGTGAGTTCGAGGCAGGGCTACAGGAGCGGGAGCGTTGGGAGCGAGAGA 861
|||||||||||| |||||||||| ||||||||||| | |||| || ||
Sbjct 846 TTACCTCAAGCCATGAGTTCGAGACAGGGCTACAG-A-----AGCG-----AG--AG--- 889
Query 862 GGTGGTTTCTCTCAGGGACGGCAAACGCACCGAAGGGCCTTATCTATGTCT-TTCTCTTT 920
||||||| ||||||| ||||||| |||||| ||||||||||||||||| || ||||
Sbjct 890 --TGGTTTCCCTCAGGGTCGGCAAATGCACCGGCGGGCCTTATCTATGTCTCTTA-CTTT 946
Query 921 CTCTTTC-CAAACTGCTTCTGTTCGGTCAATACATGACATGAATGATCAAGCCCAAG 976
|| ||| |||||| ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 947 CTTTTTTTCAAACTACTTCTGTTCGGTCAACACATGACAGGAATGATCAAGTCCAAG 1003
> Ahg489785 jgi|Araly1|489785|fgenesh2_kg.6__2919__AT4G09110.1
Length=725
Score = 529 bits (286), Expect = 2e-149
Identities = 472/561 (84%), Gaps = 16/561 (3%)
Strand=Plus/Plus
Query 6 TATCTTCACGAGATATCACCTTCCT-CGGG-TCGTATC-AGGTGTTATATTGCCGCTCTT 62
||||||| ||||| ||| | | || ||| ||| | | ||| ||| | |||||||||||
Sbjct 6 TATCTTCGCGAGAGATC-TCAT-CTATGGGATCGAAGCAAGG-GTTTTGTTGCCGCTCTT 62
Query 63 CCTTTTCCATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-CCAACAAACAGCA 121
|||| ||||| ||||||||||||| ||||| || |||||||| | || || || |||
Sbjct 63 CCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCC-GCAGACCGCA 121
Query 122 TTAGACAA-ACCAATCTCTCAG-CTGACTCAATAATTGCAATCGTTGTGCTTGCAATATT 179
||| || |||||| | || | | || || ||||||||||| ||| ||||||||| ||
Sbjct 122 ACAGA-AATACCAAT-TTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTT 179
Query 180 TATATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGATTGG 239
||| ||| || || | || |||||| ||||||| || ||||||||| | |||| |||
Sbjct 180 TATCTCAATAACCACGCTCGCTTGTTTCTTGCACAACACATTCTATAGAGCAGAGCTTGA 239
Query 240 GGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAGGAAGTCAT 299
||| ||| | ||||| || || ||||||||||| ||| ||||||||||||||||| ||||
Sbjct 240 GGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAACTCAT 299
Query 300 CGAGTCTTTTCCAACT-TTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAGGCG 358
|||||| ||||| | | ||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 300 CGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAGGCG 358
Query 359 GTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 359 GAGTCGAATGTGCAATTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
Query 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTTGGTCCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCGGTCCA 478
Query 479 CATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATCCATATCTG 537
|||||||||| |||||||||||||||||||||||||| |||| || || |||||||| |
Sbjct 479 CATGTCCGGTCTGTCGTGCAAATCTGTCTCTCAAACCTTGTGAAAGCTT-TCCATATCCG 537
Query 538 AACATGGATGTTGAAACGGGA 558
| ||||||| ||||||| |||
Sbjct 538 ATCATGGATCTTGAAACAGGA 558
> Ahg942696 jgi|Araly1|942696|scaffold_603240.1
Length=1108
Score = 368 bits (199), Expect = 4e-101
Identities = 453/570 (79%), Gaps = 39/570 (7%)
Strand=Plus/Plus
Query 1 ATGAATATCTTCAC--GAGATATCACCTTCCTCGGGTCGTA-TCAGGTGTTATATTGCCG 57
|||| ||||||||| ||||| ||| | | |||| ||||| | | ||||| |||||||
Sbjct 21 ATGACTATCTTCACTAGAGATTTCAGC--CATCGGATCGTAGT-ATGTGTTTTATTGCCA 77
Query 58 CTCTTCCTTTTCC-ATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTACCAACAAA 116
||||||||||||| || |||||||||||| | || ||||||||||| | | | |
Sbjct 78 CTCTTCCTTTTCCAAT-GTTTGCCTTACGTAATTTGCCAGCAAGAGTCCG---C-A-GAT 131
Query 117 CAGCATTAG-ACAAACCAATCTCTCAGCTGACTCAATAATTGCAATCGTTGTGCTTGCAA 175
| ||| | | | ||| ||| ||| | | || ||||||| |||||| ||||| | |
Sbjct 132 C-GCAATGGAAGAAA-CAAAGTCT---C--A-TCGATAATTGGGATCGTTTTGCTTTC-A 182
Query 176 TAT-TTATATCATTAGGCATGGTCTCTTGTTGCTTGCAC--TGCATATTCTATAGGGAAG 232
| | || || || |||| | || ||||||||| || || | | ||| ||||
Sbjct 183 T-TGTT-CCTC-TTTCTTTTGGTTTTTTACTGCTTGCACTATGGAT-GT-TGTAGTGAAG 237
Query 233 AGATTGGGGC-GGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAG 291
|||||| ||| || |||||| | || || |||||||||| ||| ||||| | || |||
Sbjct 238 AGATTGAGGCAGG-AGGTCATCAAGTGTTGCACAGTAGAGTGAGGTGTGGGATTGACAAG 296
Query 292 GAAGTCATCGAGTCTTTTCCAACTTTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGC 351
|| ||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 297 GATGTCATCGAGTCCTTTCCGGCTTTCCTCTATTCAGAGGTTAAAGGGCTCAAGATAGGC 356
Query 352 AAAGGCGGTGTAGAATGTGCAATTTGTC-TGAGCGAGTTTGAGGATCAAGAAACGCTACG 410
|||||||| ||||||||||||||||| | | ||||||||||||||| |||| |||||||
Sbjct 357 AAAGGCGGAGTAGAATGTGCAATTTG-CTTAAGCGAGTTTGAGGATGAAGAGTCGCTACG 415
Query 411 TTGGATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTC 470
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||
Sbjct 416 TTGGATGCCTCCTTGTAGCCACACCTTCCATGCTAATTGCATTGACGTATGGCTCTCTTC 475
Query 471 TTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATC 529
| |||| |||||||| || ||||||||| || ||||||| |||||||||||||| || ||
Sbjct 476 TCGGTCTACATGTCCAGTCTGTCGTGCAGATTTGTCTCTGAAACCCGGTGAGAGCTT-TC 534
Query 530 CATATCTGAA-CATGGATGTTGAAACGGGA 558
|||||| || ||||||| ||||||| |||
Sbjct 535 CATATCC-AAGCATGGATATTGAAACAGGA 563
> Ahg942693 jgi|Araly1|942693|scaffold_603237.1
Length=337
Score = 291 bits (157), Expect = 9e-78
Identities = 209/234 (89%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 327 AGAAGTTAAAGGGCTCAAGATAGGCAAAGGCGGTGTAGAATGTGCAATTTGTCT-GAGCG 385
||| ||||||||||||||| ||||||||||||| || ||||||||||||||||| || |
Sbjct 75 AGAGGTTAAAGGGCTCAAGCTAGGCAAAGGCGGAGTGGAATGTGCAATTTGTCTAAAG-G 133
Query 386 AGTTTGAGGATCAAGAAACGCTACGTTGGATGCCTCCTTGTAGCCACACTTTCCATGCTA 445
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 134 AGTTTGAGGATCAAGAAACGCTACGTTGGATGCCTCCTTGTAGCCATAATTTTCATGCTA 193
Query 446 ATTGCATCGATGTGTGGCTCTCTTCTTGGTCCACATGTCCGGTTTGTCGTGCAAATCTGT 505
|||||||||| ||||||||||||||| ||||||||||||| || || |||||||||||||
Sbjct 194 ATTGCATCGACGTGTGGCTCTCTTCTCGGTCCACATGTCCCGTATGCCGTGCAAATCTGT 253
Query 506 CTCTCAAACCCGGTGAGAG-TTATCCATATCTGAACATGGATGTTGAAACGGGA 558
|||| |||| ||| || || || |||||||| || ||||||| ||||||| |||
Sbjct 254 CTCTAAAACTCGGCGACAGCTT-TCCATATCCGAGCATGGATCTTGAAACAGGA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5