BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09140.1
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942697 jgi|Araly1|942697|scaffold_603241.1 3559 0.0
> Ahg942697 jgi|Araly1|942697|scaffold_603241.1
Length=2227
Score = 3559 bits (1927), Expect = 0.0
Identities = 2124/2220 (96%), Gaps = 10/2220 (0%)
Strand=Plus/Plus
Query 14 TTCGTCTCTTACGGCGGAGATGGAGGAGGAAGAATCTCCGGCGACGACGATTGTACCGAG 73
|||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 4 TTCGTCTCTTACGGTGGAGATGGAGGAGGAAGAGTCTCCGGCGACGGCGATTGCACCGAG 63
Query 74 AGAGCCACCGAAGATTCAACGCTTAGAAGAATCAGTAGTCAACCGTATCGCAGCTGGTGA 133
||| |||||||||||||||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 64 AGAACCACCGAAGATTCAACGCCTAGAGGAATCAGTGGTCAACCGTATCGCAGCTGGTGA 123
Query 134 AGTAATCCAGCGTCCAGTTTCAGCTGTGAAAGAGCTCGTTGAGAACAGCCTCGACGCCGA 193
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 124 AGTAATCCAGCGTCCAGTTTCAGCGGTGAAGGAGCTCGTTGAGAACAGCCTCGACGCCGA 183
Query 194 TTCAAGTTCCATAAGCGTCGTTGTCAAAGACGGTGGTTTGAAACTCATTCAAGTCTCCGA 253
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 184 TTCAAGTTCCATAAGCGTAGTTGTTAAAGACGGTGGATTGAAACTCATTCAAGTCTCCGA 243
Query 254 CGACGGTCACGGTATTAGACGTGAAGACTTGCCGATACTATGCGAGAGACATACAACATC 313
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 244 CGACGGTCACGGTATTAGACGTGACGACTTGCCGATATTATGCGAGAGACATACGACATC 303
Query 314 GAAGCTGACTAAGTTTGAGGATTTGTTCTCTCTGAGTTCAATGGGATTTAGAGGAGAGGC 373
|||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 304 GAAGCTGACTAAGTATGAGGATTTGTTTTCTTTGAGTTCAATGGGATTTAGAGGAGAGGC 363
Query 374 ATTAGCTAGTATGACCTATGTTGCTCATGTTACAGTGACTACTATTACTAAAGGCCAGAT 433
||| || |||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 364 ATTGGCCAGTATGACTTATGTTGCTCATGTTACAGTAACTACAATTACTAAAGGCCAGAT 423
Query 434 TCATGGTTATAGAGTGTCTTATAGAGATGGTGTCATGGAGCATGAACCAAAGGCGTGTGC 493
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 424 TCATGGTTACAGAGTGTCTTATAGAGATGGTGTCATGGAGAATGAACCAAAGGCGTGTGC 483
Query 494 TGCTGTCAAAGGAACACAGATAATGGTGGAGAATTTGTTCTACAATATGATTGCTAGAAG 553
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 484 AGCTGTTAAAGGAACACAGATAATGGTGGAGAATTTGTTCTACAATATGACTGCTAGAAG 543
Query 554 GAAGACACTTCAAAATTCTGCTGATGATTACGGGAAAATCGTGGATTTGCTGAGCCGGAT 613
|||||||||||||||||||||||||||||| |||||||| || || ||||| || |||||
Sbjct 544 GAAGACACTTCAAAATTCTGCTGATGATTATGGGAAAATAGTAGACTTGCTAAGTCGGAT 603
Query 614 GGCTATTCATTACAATAATGTCAGCTTTTCTTGTCGAAAGCATGGAGCTGTTAAGGCTGA 673
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GGCTATTCATCACAATAATGTCAGCTTTTCTTGTCGAAAGCATGGAGCTGTTAAGGCTGA 663
Query 674 TGTTCACTCAGTCGTGTCACCTTCAAGGCTTGATTCAATTAGGTCTGTATATGGAGTATC 733
|||||||||||||||||| || |||||||||||||| || || ||||| |||||||||||
Sbjct 664 TGTTCACTCAGTCGTGTCGCCATCAAGGCTTGATTCCATCAGATCTGTTTATGGAGTATC 723
Query 734 AGTTGCAAAGAACTTGATGAAAGTAGAAGTTTCCTCCTGTGACTCC-TCTGGTTGTACTT 792
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 724 AGTTGCAAAGAACTTGATGAAAGTAGAAGTTTCCTCCTGTGAC-CCTTCCGGTTGTACTT 782
Query 793 TTGATATGGAGGGTTTCATATCCAATTCTAACTATGTTGCTAAGAAGACTATATTGGTGC 852
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 783 TTGATATGGAGGGTTTCATATCCAATTCAAACTATGTTGCTAAGAAGACCATATTGGTGC 842
Query 853 TTTTCATTAATGATAGATTGGTGGAATGCTCTGCCTTAAAAAGAGCCATTGAAATTGTTT 912
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 TTTTCATTAATGATAGATTGGTGGAATGCTCTGCCTTAAAAAGAGCCATTGAGATTGTTT 902
Query 913 ATGCTGCAACATTGCCAAAAGCATCAAAACCTTTTGTCTACATGTCAATCAATTTGCCAC 972
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 903 ATGCTGCAACATTACCAAAAGCATCGAAACCTTTTGTCTACATGTCAATCATTTTGCCAC 962
Query 973 GGGAACATGTTGATATCAATATTCACCCAACAAAGAAAGAGGTTAGCCTTCTAAACCAGG 1032
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 963 GGGAACATGTTGATATCAATATTCACCCAACAAAGAAAGAGGTTAGCCTACTAAACCAGG 1022
Query 1033 AAATCATTATTGAGATGATACAGTCAGAGGTTGAAGTAAAACTGAGAAACGCAAATGATA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AAATCATTATTGAGATGATACAGTCAGAGGTTGAAGTAAAACTGAGAAACGCAAATGATA 1082
Query 1093 CTAGGACGTTTCAAGAGCAGAAAGTGGAATACATTCAATCTACGTTAACAT-CTCAGAAA 1151
||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1083 CTAGGACGTTTCAAGAGCAGAAAGTGGAATACATTCAATCTACGTTAACATCCCCA-AGA 1141
Query 1152 AGTGATTCTCCAGTTTCTCAGAAGCCTTCTGGACAAAAGACACAGAAAGTTCCTGTGAAC 1211
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1142 AGTGATTCTACAGTTTCTCAGAAGCTTTCTGGACAAAAAACACAGAAAGTTCCTGTGAAC 1201
Query 1212 AAAATGGTGAGAACAGATTCATCAGATCCAGCTGGAAGGTTACATGCCTTTTTGCAACCC 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AAAATGGTGAGAACAGATTCATCAGATCCAGCTGGAAGGTTACATGCCTTTTTGCAACCC 1261
Query 1272 AAGCCACA-AAGTCTCCCTGACAAGGTTTCTAGTTTGAGTGTAGTAAGGTCTTCTGTAAG 1330
|||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 1262 AAGCCACATAA-TCTCCCTGACAAGGTTTCTAGTCTGAGTGTAGTTAGGTCTTCGGTAAG 1320
Query 1331 GCAAAGAAGAAACCCAAAGGAAACTGCTGATCTTTCTAGTGTCCAGGAACTTATTGCTGG 1390
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1321 GCAAAGAAGAAACCCAAAGGAAACTGCTGATCTTTCTAGTGTCCAAGAACTTATTGCTGG 1380
Query 1391 AGTTGACAGCTGCTGCCATCCAGGTATGCTGGAGACTGTAAGGAATTGCACATATGTTGG 1450
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1381 AGTTGACAGCTGCTGCCATCCAGGTTTGCTGGAGACTGTGAGGAATTGCACATATGTTGG 1440
Query 1451 AATGGCAGATGATGTTTTTGCTTTAGTTCAGTATAACACCCATCTATATCTAGCAAATGT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AATGGCAGATGATGTTTTTGCTTTAGTTCAGTATAACACCCATCTATATCTAGCAAATGT 1500
Query 1511 GGTGAATCTCAGCAAAGAGCTAATGTATCAGCAAACTCTTCGTCGTTTTGCTCATTTTAA 1570
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGTGAACCTCAGCAAAGAGCTTATGTATCAGCAAACTCTTCGTCGTTTTGCTCATTTTAA 1560
Query 1571 CGCAATACAGCTTAGCGATCCAGCCCCTTTGTCAGAGTTGATATTGTTGGCTCTGAAAGA 1630
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1561 TGCAATACAGCTTAGCGATCCAGCCCCTCTGTCCGAGTTGATATTGTTGGCTCTGAAAGA 1620
Query 1631 GGAGGATCTAGATCCAGGAAA-TGATACAAAA-GATGATCTGAAAGAAAGAATTGCTGAA 1688
|||||||||||||||| |||| ||||| |||| |||||| ||||||||||||| ||||||
Sbjct 1621 GGAGGATCTAGATCCA-GAAACTGATA-AAAATGATGATTTGAAAGAAAGAATCGCTGAA 1678
Query 1689 ATGAATACAGAACTCCTCAAGGAAAAAGCAGAAATGTTAGAGGAGTATTTCAGCGTGCAC 1748
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1679 ATGAATACAGAACTCCTCAAGGAAAAAGCGGAAATGTTAGAGGAGTATTTCAGCGTTTAC 1738
Query 1749 ATTGACTCCAGTGCAAATTTGTCAAGGCTTCCTGTGATACTCGACCAGTATACACCTGAC 1808
|||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1739 ATTGACTCCAATGGAAATTTGTCACGGCTTCCTGTCATACTCGACCAGTATACACCTGAC 1798
Query 1809 ATGGATCGTGTTCCTGAATTTTTACTATGCTTGGGAAATGATGTTGAGTGGGAAGATGAG 1868
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATGGATCGTGTTCCCGAATTTTTACTATGCTTGGGAAATGATGTTGAGTGGGAAGATGAG 1858
Query 1869 AAGAGTTGCTTTCAAGGAGTTTCTGCAGCTATTGGGAACTTTTACGCCATGCATCCTCCT 1928
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1859 AAGAGTTGCTTTCAAGGAGTTTCTGCGGCTATTGGGAACTTTTACGCCATGCATCCTCCT 1918
Query 1929 CTTTTGCCAAACCCATCGGGTGACGGTATTCAGTTCTATAGTAAGAGAGGTGAGAGCTCT 1988
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1919 CTTTTGCCAAATCCATCGGGTGACGGTATTCAGTTCTATACTAAGAGAGGTGAGAGCTCT 1978
Query 1989 CAGGAAAAGTCAGATTTAGAGGGTAACGTCGATATGGAGGACAATCTTGACCAAGATCTT 2048
|||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 1979 CAGGAAAAGTCAGATTTAGAGGGTAACGTCGAGATGGAGGATAATCTTGACAAAGATCTT 2038
Query 2049 CTGTCAGATGCTGAAAACGCATGGGCACAACGTGAATGGTCAATCCAACACGTGTTGTTT 2108
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2039 CTGTCAGATGCTGAAAACGCATGGGCACAACGTGAATGGTCAATCCAACACGTGCTGTTT 2098
Query 2109 CCGTCAATGAGATTGTTCTTGAAGCCACCAGCTTCCATGGCTTCAAATGGGACTTTTGTA 2168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CCGTCAATGAGATTGTTCTTGAAGCCACCAGCTTCCATGGCTTCAAATGGGACTTTTGTA 2158
Query 2169 AAGGTAGCATCCCTTGAAAAGCTGTACAAGATATTCGAACGATGCTAACTGAAACCGCTG 2228
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2159 AAGGTAGCATCCCTTGAAAAGCTGTACAAGATATTCGAACGATGCTAGTTGAAATCGCTG 2218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89702526975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5