BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09153.1
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895033 jgi|Araly1|895033|Al_scaffold_0006_3029 294 1e-79
Ahg942700 jgi|Araly1|942700|scaffold_603244.1 235 9e-62
> Ahg895033 jgi|Araly1|895033|Al_scaffold_0006_3029
Length=231
Score = 294 bits (159), Expect = 1e-79
Identities = 211/235 (90%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATATCATGTTCTTATTTACTCATACTTATGCTTGCTTTGTCAGTTTTTTCA 60
||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGGCCAAGATATCATGCTCTTATTTTCTCATACTCATGCTTGTTTTGTCAGTTTTTTCA 60
Query 61 GTTGTTGAGAAGGCTAAGGGAGATAAGCGTTGTAGTATAATCATTGATCTTTCTCCATGT 120
|||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 61 GTTGTTGAGAAGGCTAAGGGAGATAAACGTTGTACTCTAATCATTGATCTATCTCCATGT 120
Query 121 TACCCT-ATTGAATGTCGTCTATCAT-GCATTA-CCG-AGCGCAATGGAGATGGAGAATG 176
|||||| || || ||||||||| || | ||| ||| |||||||||||| |||||||||
Sbjct 121 TACCCTCAT-GATTGTCGTCTAA-ATTG--TTATCCGGAGCGCAATGGAGTTGGAGAATG 176
Query 177 TGTTGTATCCAAAGTTGGTAGTACTCCTAATTGTTTGTGTACTTATGATTGTTAA 231
| | | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 177 TATCGCATCCAAAGTTGGTAGTACTCCTAATTGTGTGTGTACTTATGATTGTTAA 231
> Ahg942700 jgi|Araly1|942700|scaffold_603244.1
Length=262
Score = 235 bits (127), Expect = 9e-62
Identities = 202/235 (86%), Gaps = 17/235 (7%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATATCATGTTCTTATTTACTCATACTTATGCTTGCTTTGTCAGTTTTTTCA 60
||||| || ||||||||||||||||| |||||||| ||||||| ||| | | |||
Sbjct 21 ATGGCCAAAATATCATGTTCTTATTTCCTCATACTCATGCTTG-TTT-T--G-----TCA 71
Query 61 GTTGTTGAGAAGGCTAAGGGAGATAAGCGTTGTAGTATAATCATTGATCTTTCTCCATGT 120
||||||||||||| |||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 72 GTTGTTGAGAAGGTTAAGGGAGATAAACGTTGTACTCTAATCATTGATCTATCTCCATGT 131
Query 121 TACCCT-ATTGAATGTCGTCT-ATCATGCATTA--CCGAGCGCAATGGAGATGGAGAATG 176
|||||| | ||| |||||||| | | || ||| | ||||||||||||| |||||||||
Sbjct 132 TACCCTGA-TGATTGTCGTCTAAAC-TG--TTATGCGGAGCGCAATGGAGTTGGAGAATG 187
Query 177 TGTTGTATCCAAAGTTGGTAGTACTCCTAATTGTTTGTGTACTTATGATTGTTAA 231
| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 188 TATTGCATCCAAAGTTGGTAGTACTCCTAATTGTGTGTGTACTTATGATTGTTAA 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7943158288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5