BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09160.1 Length=2321 Score E Sequences producing significant alignments: (Bits) Value Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1 3147 0.0 Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219 438 7e-122 > Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1 Length=2326 Score = 3147 bits (1704), Expect = 0.0 Identities = 2126/2319 (92%), Gaps = 71/2319 (3%) Strand=Plus/Plus Query 35 TCTCTCTGTCCCTTTCTTCTTCTTTTTTCAAGAACAATaaaaaaaTGTC-TCAAGATTCT 93 ||||||| |||||||||||| ||||||||||||| |||||||||||| | |||||||||| Sbjct 47 TCTCTCTCTCCCTTTCTTCTGCTTTTTTCAAGAA-AATAAAAAAATG-CTTCAAGATTCT 104 Query 94 G---C-A--ACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 147 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 GCAACTACTACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 164 Query 148 GAAGAAGATGAGCCAAAGCATGTAACATCGGAAGAAGAGGCACCGGTGACTTCGGAGACA 207 |||||| | |||||||||||||| || | |||||||||||||||||||||||||||| || Sbjct 165 GAAGAACAAGAGCCAAAGCATGTTACTTTGGAAGAAGAGGCACCGGTGACTTCGGAGCCA 224 Query 208 AATCTG-AAGCTACCTTTGATGCCGGAGCTAGAGGAGTCAAATCATACGGCGGAGGTTGT 266 |||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 225 AATCTGCAA-CTACCTTTAATGCCGGAGCTAGAGGAGTCAAATCATGCGGCGGAGGTTGA 283 Query 267 TTCAGAGAAG---------GTGACGCCGGAGACGATGACTTTGGAGTCAGAAGGTCTCAA 317 |||||||||| ||||||||||| ||| |||||| || |||||| ||||| || Sbjct 284 TTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACTTCGGTGTCAGAGGGTCTTAA 343 Query 318 CCACGCGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAGACAGAGACTGCGAA 377 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 344 CCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAGACAGAGACTTCGAA 403 Query 378 GCTAGAGGTTCTCAACCACACGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGA 437 || ||||||||||||||| ||||||||||||||||| || ||||| || |||||||||| Sbjct 404 GCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCACATCAAATGACGCCGGA 463 Query 438 GAAAGAGACTGTGAAATCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACA 497 || ||||||| |||| ||||| ||| |||||| | ||||||||||||||||||| ||| Sbjct 464 GACAGAGACTTTGAAGCCAGAGGTTCCCAACCATGCAGCGGAGGATTCAGAGCAGATACA 523 Query 498 TGAAGTGACGCCGGAGACAGAGACTGTGAAGTCAGAGGTTCTCAACCATGCGGCGGAGGA 557 || | |||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||| Sbjct 524 ACAAATAACGCCGGAGACAGAGACTTTGAAGCCAGAGGTTCTTAACCACGCGGCGGCGGA 583 Query 558 TTCAGAGCAGCCACGTGGAGTGACACCGACGCCGGAGACAGAAACATCGGAGGCAGACAC 617 ||||| |||||||| ||||||||| ||||||||||||| |||||| |||||| ||||||| Sbjct 584 TTCAGTGCAGCCACATGGAGTGACGCCGACGCCGGAGAAAGAAACTTCGGAGACAGACAC 643 Query 618 GTCATTGCTTGTAACTTCCGAGACAGAAGAGCCTAACCA-TGCGGCGGAGGATTATTC-- 674 |||||||||||||| ||| ||| |||||||||||||||| | |||||||||| |||| Sbjct 644 GTCATTGCTTGTAATTTCGGAGCCAGAAGAGCCTAACCACT-TGGCGGAGGATGATTCAG 702 Query 675 --A-----GAGACAGAGCCATCACAGAAACTAATGTTGGAGCAGAGGAGAAAGTACATGG 727 | |||||||||||||| |||||||| ||||| ||||| ||||||||||||||| Sbjct 703 AGACGCCGGAGACAGAGCCATCTCAGAAACTGATGTTAGAGCACCGGAGAAAGTACATGG 762 Query 728 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGATGAAGCGGTGTTAGAAGCTGCAGCGT 787 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 763 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGACGCGGCGGTGTTAGAAGCTGCAGCGT 822 Query 788 CAGTCCCTGAGCCAAAGCAACCAGAGCCTCAGAcaccaccaccaccaccaTCTACTACTA 847 |||| || | ||||||||| |||||||| | | || | ||||| | | Sbjct 823 CAGT--CT-------------CTGAGCCTCAGGCACCACCA-C-CTACTA-CTACTGC-A 863 Query 848 CTTCCACTGTTGCATCTAGATCTTTAGCCGAAATGATGAACAGAGAAGAAGCAGAAGTAG 907 | |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 864 C--CCACCGTTGAATCTAGATCTTTAGCGGAAATGATGAACAGAGAAGAAGCAGAAGCAG 921 Query 908 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 922 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 981 Query 968 AAATCTCCGATCTTTCAGAAACAGAGTTAAACGCACTTCAAGAGCTTCGTCACCTTCTTC 1027 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 982 AAATCTCCGATCTTTCAGAACCAGAGTTAAACGCACTTCACGAGCTTCGTCACCTTCTTC 1041 Query 1028 AAGTATCACAAGATTCAAGCAAAACCT-CTATATGGGGTGTGCCACTTCTCAAAGACGAC 1086 |||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| Sbjct 1042 AAGTATCACAAGATTCAAGCAAAAGCTTC-ATATGGGGTGTGCCACTTCTCAAAGACGAC 1100 Query 1087 AGAACCGACGTCGTTTTGTTAAAGTTTCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1146 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1101 AGAACCGACGTCGTTTTGTTAAAGTTCCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1160 Query 1147 TACTCAATGCTAAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTA 1206 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 TACTCAATGCTCAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTC 1220 Query 1207 GACGAAAACCTCGGTGACGATTTAGACAAAGTTGTGTTCATGCAAGGACAAGACAAGGAG 1266 || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || Sbjct 1221 GATGAAAACCTCGGTGACGATTTAGACAAGGTTGTGTTCATGCAAGGACACGACAAAGAC 1280 Query 1267 AATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1326 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1281 AATCATCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1340 Query 1327 ACGTTTTCAGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1386 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 ACGTTTTCTGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1400 Query 1387 AAGAGTATCAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1446 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1401 AAGAGTATAAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1460 Query 1447 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1461 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1520 Query 1507 CTTCATCTTCTTCAAGACAATTACCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1566 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1521 CTTCATCTTCTTCAAGACAATTATCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1580 Query 1567 CCATGGTGGTACCTTGCGTTCTATAGAATTATTAGTCCTTTTATGTCACAAAGGTCAAAG 1626 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1581 CCATGGTGGTACCTTGCGTTCTATAGGATTATTAGTCCTTTTATGTCACAAAGATCAAAG 1640 Query 1627 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTCTCAAGTACATATCA 1686 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1641 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTTTCAAGTACATATCG 1700 Query 1687 CCCGAACATGTCCCGGTTCAGTATGGTGGACTAAGTGTGGATAATTGCGAGTGTAACTCG 1746 || |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1701 CCAGAACATGTTCCGGTTCAGTATGGTGGACTAAGTGTGGATAACTGCGACTGCAACTCC 1760 Query 1747 GATTTCACACACGATGATATCGCTACCGAGATTACTGTTAAACCAACTACTAAACAAACC 1806 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1761 GATTTCACACACGATGATATCGCTACCGAGATTACTATTAAACCAACTACTAAACAAACC 1820 Query 1807 GTCGAGATTATTGTTTACGAGAAATGTACAATCGTGTGGGAGATAAGAGTAGTGGGATGG 1866 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1821 GTCGAGATTATTGTTTACGAGAAATGCACGATCGTGTGGGAGATAAGAGTAGTGGGATGG 1880 Query 1867 GAGGTTTCGTATGGAGCGGAGTTTGTGCCGGAGAACAAAGAAGGGTATACAGTGATCATT 1926 |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1881 GAGGTTTCATATGGAGCAGAGTTTGTGCCGGAGAATAAAGAAGGGTATACGGTGATCATT 1940 Query 1927 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTT 1986 |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| Sbjct 1941 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACCGGTAGTGTCTCAGAGCTTCAAAGTT 2000 Query 1987 GGAGAAGTTGGCAGGATTTTGCTAACTGTTGATAACCCGACTTCGACCAAGAAAATGCTT 2046 |||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| Sbjct 2001 GGAGAAGTTGGCAGGATTTTGCTAACCGTGGATAACCCGAATTCAACCAAGAAAATGCTT 2060 Query 2047 ATCTACAGGTTCAAGGTTAAGCCTTTAGCT-TGTGAGTAACAAAAGCCGCATCTTTCGTC 2105 ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| | Sbjct 2061 ATCTACAGGTTCAAGGTTAAGCCTTTA-CTATGTGAGTAACAAAAGTCGCATCTTTC-T- 2117 Query 2106 TGAGTGTTTCTTAGTTTAGAACTT-GATCATATGATTGTTGATTGTGTTTTGTTTTTCTC 2164 |||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| || Sbjct 2118 TGAGTGTTTCTTAGGTTAGAACTTTGATCATATGATTGTTGGTTGTGTTTT-TTTTT-TC 2175 Query 2165 TCTTTT-ACCGACTTATATGTTTGTGTGGTTCTGTTTGCTAAATTCttttgttttatatt 2223 | || | ||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2176 T-TTGTCACCTACTTATATGTTTGTTTGGTTCTGTTTGCTAAATTCTTTTGTTTTATATT 2234 Query 2224 -gtattttgctctcttattttttatttttCAGTTTGCTTCCAAATTTCACTGAGGAATGT 2282 |||||||||||||||||||||| || |||||||||||||||||| |||| |||| Sbjct 2235 TGTATTTTGCTCTCTTATTTTTT------CATTTTGCTTCCAAATTTCACCGAGGTATGT 2288 Query 2283 TTTTGACTTTTGAGTGTTGAATGGCTTTTAAAGGAAACC 2321 ||| ||||||||| ||||||||||||||||||||||||| Sbjct 2289 TTT-GACTTTTGATTGTTGAATGGCTTTTAAAGGAAACC 2326 Score = 191 bits (103), Expect = 2e-47 Identities = 155/179 (87%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 398 CGGCGGA-G--GATTCAGAGCAGACACATGAAGTGACGCCGGAGAAAGAGACTGT-GAAA 453 ||||||| | ||||||||| || ||||| ||||||||||||| | | |||| | | Sbjct 271 CGGCGGAGGTTGATTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACT-TCGGTG 329 Query 454 TCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAG 513 |||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 330 TCAGAGGGTCTTAACCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAG 389 Query 514 ACAGAGACTGT-GAAGTCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGCAGCCAC 571 ||||||||| | |||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 390 ACAGAGACT-TCGAAGCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCAC 447 > Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219 Length=1494 Score = 438 bits (237), Expect = 7e-122 Identities = 775/1028 (75%), Gaps = 64/1028 (6%) Strand=Plus/Plus Query 1075 CTCAAAGACGACAGAACCGACGTCGTTTT-GTTAAAGTTTCTAAGAGCAAGAGACTTTAA 1133 ||| ||||||| |||| |||||||||||| | ||| || |||||||| || || ||| | Sbjct 493 CTCGAAGACGATAGAAGCGACGTCGTTTTACTGAAA-TTCCTAAGAGCTAGGGA-TTTCA 550 Query 1134 ACCT-CAAGAAGC-TTACTCAATGCTAAACAAGACAC-TCCAATGGAGAATCGACTTCAA 1190 | | |||| | || | ||||| || || || | | ||||||||| || ||||| Sbjct 551 AGGTGAAAGATTCGTT-GGCTATGCTCAAGAACAC-CGTTAAATGGAGAAGAGAGTTCAA 608 Query 1191 CATCGAAGAGCTT-CTAGACGAA-AACCTCGGT-GACGAT-TTAGACAAAGTTGTGTTCA 1246 ||||| || || | || ||| || || || || ||| || ||||| |||||||| | Sbjct 609 GATCGATGA-ATTGGTTGAGGAAGAA-CT-TGTGGATGATCTT-GACAAGGTTGTGTTTA 664 Query 1247 TGCAAGGACAAGA-CAAGGAGAATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCAG 1305 |||| ||||| || | || || ||| ||||| |||||||||||||| ||||||||||| Sbjct 665 TGCATGGACACGACCGAGAAG-GTCACCCTGTGTGTTACAATGTCTATGGTGAGTTTCAA 723 Query 1306 AACAAAGATCTTTATCAGAAAACGTTTTCAGATGAAGAGAAGA-GAGAACGGTTCTTG-A 1363 ||||| || |||||| | || |||||||| ||||| || |||| || ||| |||||| | Sbjct 724 AACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAAGAGGA-AACATTTCTTGAA 782 Query 1364 GATGGAGGATTCAGTTTCTT-GAAAAGAGTATCAGGAATCTTGATTTT-GTAGCTGGTGG 1421 || ||||||||| ||||| || | |||||| ||||| || |||||| || ||||||| Sbjct 783 GA-CTAGGATTCAG-TTCTTGGAGAGGAGTATAAGGAAGCTAGATTTTAGT-TCTGGTGG 839 Query 1422 TGTTTCCACGATATGT-CAAGTAAATGATCTTAAGAATTCTCCAGGACCT-GGTAAGACT 1479 ||||| || || | | || || |||||| | ||||||||||| || | || |||| Sbjct 840 GGTTTCTACTAT-TTTCCAGGTTAATGATATGAAGAATTCTCC-GGGGTTGGGGAAGAAA 897 Query 1480 GAGCTTAGGTTAGCTACTAAGCAAGCTCTTCATCTT-CTTCAAGACAATTACCCTGAGTT 1538 |||||||| | |||||||||||||||| || | || ||||||||||||||||||||||| Sbjct 898 GAGCTTAGATCAGCTACTAAGCAAGCTGTTGA-GTTGCTTCAAGACAATTACCCTGAGTT 956 Query 1539 TGTCT-CTAAACAGA-TATTCATCAATGTTCCATGGTGGTACCTTGCGTTCTATAGAAT- 1595 ||||| | |||||| | || ||||||||||| ||||||||||||| ||| | || | | Sbjct 957 TGTCTTC-AAACAGGCTTTT-ATCAATGTTCCTTGGTGGTACCTTGTGTT-T-TACACTG 1012 Query 1596 T-ATTAGTCCTTTTATGTCACAAAGGTCAAAGAGCAAACTAGT-TTTCGCAGGTCCTTCA 1653 | ||| |||| || ||| ||| ||||||||||||||| || || ||| || ||||| ||| Sbjct 1013 TGATTGGTCCGTTCATGACACCAAGGTCAAAGAGCAAGCTTGTGTTT-GCTGGTCCATCA 1071 Query 1654 AGATCTGCAGAAACCCTTCTCAAGTACATATCACCCGAACATGTCCCGGTTCAGTATGGT 1713 | || || ||||| ||| |||| |||||||||||||| || || || |||||||| || Sbjct 1072 CGTTCAGCTGAAACACTTTTCAAATACATATCACCCGAGCAAGTTCCAGTTCAGTACGGA 1131 Query 1714 GGACTAAGTGTGGATAATTGCGAGTGTAACTCGGA-TTTCACACACGATGATATC-GC-T 1770 ||| | ||||| ||| |||||| || ||| | || ||| | || ||| || || | Sbjct 1132 GGATTGAGTGTAGATCCTTGCGACTGCAACCCAGACTTTT-CGTTGGAAGAT-TCAGCCT 1189 Query 1771 ACCGAGATTACTGTTAAACCAACTACTAAACAAACCGTCGAGATTATTGTTTACGAGAAA 1830 | ||||| |||||||| || || |||||||| || ||||| || | || |||||| Sbjct 1190 -CAGAGATCACTGTTAAGCCTGGAACAAAACAAACTGTTGAGATCATAATCTATGAGAAA 1248 Query 1831 TGTACAA-TCGTGTGGGAGATAAGAGTAGTGGGATGGGAGGTTT-CGTATGGAG-CGGAG 1887 ||| || | |||||||||||||| ||| | |||||||| || | || || | || Sbjct 1249 TGTG-AACTTGTGTGGGAGATAAGGGTAATTGGATGGGAAGTGAGC-TACA-AGGCCGAA 1305 Query 1888 TTTGTGCCGGA-GAACAAAGAAGGGTATACAGTGATCATTCAGAAACCGAGGAAGATGAC 1946 ||||||||||| ||| ||||| | || || ||| | || |||||||| |||||||||| Sbjct 1306 TTTGTGCCGGAAGAA-AAAGATGCTTACACGGTGGTTATACAGAAACCAAGGAAGATGAG 1364 Query 1947 TGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTTGGA-GAAG-TTGGCA-GGAT 2003 || |||||| |||| | | |||||||||||||| | | || | |||||| || | Sbjct 1365 ACCGTCCGATGAACCGGTGTTAACCCATAGCTTCAAAGT-GAATGA-GCTTGGCAAGG-T 1421 Query 2004 TTTGCTAACTGTTGATAACCCGACTTCGACCAAGAA-AATGCTTATCTACAGGTTCAAGG 2062 ||| || || || || ||||| || || | ||||| || ||| | ||||||||||| | Sbjct 1422 TTTACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAA-GCTCGTTTACAGGTTCAATG 1480 Query 2063 TTAAGCCT 2070 | || ||| Sbjct 1481 TCAAACCT 1488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87417112275 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5