BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09160.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1 3147 0.0
Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219 438 7e-122
> Ahg489788 jgi|Araly1|489788|fgenesh2_kg.6__2922__AT4G09160.1
Length=2326
Score = 3147 bits (1704), Expect = 0.0
Identities = 2126/2319 (92%), Gaps = 71/2319 (3%)
Strand=Plus/Plus
Query 35 TCTCTCTGTCCCTTTCTTCTTCTTTTTTCAAGAACAATaaaaaaaTGTC-TCAAGATTCT 93
||||||| |||||||||||| ||||||||||||| |||||||||||| | ||||||||||
Sbjct 47 TCTCTCTCTCCCTTTCTTCTGCTTTTTTCAAGAA-AATAAAAAAATG-CTTCAAGATTCT 104
Query 94 G---C-A--ACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 147
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GCAACTACTACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 164
Query 148 GAAGAAGATGAGCCAAAGCATGTAACATCGGAAGAAGAGGCACCGGTGACTTCGGAGACA 207
|||||| | |||||||||||||| || | |||||||||||||||||||||||||||| ||
Sbjct 165 GAAGAACAAGAGCCAAAGCATGTTACTTTGGAAGAAGAGGCACCGGTGACTTCGGAGCCA 224
Query 208 AATCTG-AAGCTACCTTTGATGCCGGAGCTAGAGGAGTCAAATCATACGGCGGAGGTTGT 266
|||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 225 AATCTGCAA-CTACCTTTAATGCCGGAGCTAGAGGAGTCAAATCATGCGGCGGAGGTTGA 283
Query 267 TTCAGAGAAG---------GTGACGCCGGAGACGATGACTTTGGAGTCAGAAGGTCTCAA 317
|||||||||| ||||||||||| ||| |||||| || |||||| ||||| ||
Sbjct 284 TTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACTTCGGTGTCAGAGGGTCTTAA 343
Query 318 CCACGCGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAGACAGAGACTGCGAA 377
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 344 CCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAGACAGAGACTTCGAA 403
Query 378 GCTAGAGGTTCTCAACCACACGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGA 437
|| ||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||
Sbjct 404 GCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCACATCAAATGACGCCGGA 463
Query 438 GAAAGAGACTGTGAAATCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACA 497
|| ||||||| |||| ||||| ||| |||||| | ||||||||||||||||||| |||
Sbjct 464 GACAGAGACTTTGAAGCCAGAGGTTCCCAACCATGCAGCGGAGGATTCAGAGCAGATACA 523
Query 498 TGAAGTGACGCCGGAGACAGAGACTGTGAAGTCAGAGGTTCTCAACCATGCGGCGGAGGA 557
|| | |||||||||||||||||| ||||| |||||||||| ||||| ||||||| |||
Sbjct 524 ACAAATAACGCCGGAGACAGAGACTTTGAAGCCAGAGGTTCTTAACCACGCGGCGGCGGA 583
Query 558 TTCAGAGCAGCCACGTGGAGTGACACCGACGCCGGAGACAGAAACATCGGAGGCAGACAC 617
||||| |||||||| ||||||||| ||||||||||||| |||||| |||||| |||||||
Sbjct 584 TTCAGTGCAGCCACATGGAGTGACGCCGACGCCGGAGAAAGAAACTTCGGAGACAGACAC 643
Query 618 GTCATTGCTTGTAACTTCCGAGACAGAAGAGCCTAACCA-TGCGGCGGAGGATTATTC-- 674
|||||||||||||| ||| ||| |||||||||||||||| | |||||||||| ||||
Sbjct 644 GTCATTGCTTGTAATTTCGGAGCCAGAAGAGCCTAACCACT-TGGCGGAGGATGATTCAG 702
Query 675 --A-----GAGACAGAGCCATCACAGAAACTAATGTTGGAGCAGAGGAGAAAGTACATGG 727
| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 703 AGACGCCGGAGACAGAGCCATCTCAGAAACTGATGTTAGAGCACCGGAGAAAGTACATGG 762
Query 728 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGATGAAGCGGTGTTAGAAGCTGCAGCGT 787
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 763 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGACGCGGCGGTGTTAGAAGCTGCAGCGT 822
Query 788 CAGTCCCTGAGCCAAAGCAACCAGAGCCTCAGAcaccaccaccaccaccaTCTACTACTA 847
|||| || | ||||||||| |||||||| | | || | ||||| | |
Sbjct 823 CAGT--CT-------------CTGAGCCTCAGGCACCACCA-C-CTACTA-CTACTGC-A 863
Query 848 CTTCCACTGTTGCATCTAGATCTTTAGCCGAAATGATGAACAGAGAAGAAGCAGAAGTAG 907
| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 864 C--CCACCGTTGAATCTAGATCTTTAGCGGAAATGATGAACAGAGAAGAAGCAGAAGCAG 921
Query 908 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 981
Query 968 AAATCTCCGATCTTTCAGAAACAGAGTTAAACGCACTTCAAGAGCTTCGTCACCTTCTTC 1027
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 982 AAATCTCCGATCTTTCAGAACCAGAGTTAAACGCACTTCACGAGCTTCGTCACCTTCTTC 1041
Query 1028 AAGTATCACAAGATTCAAGCAAAACCT-CTATATGGGGTGTGCCACTTCTCAAAGACGAC 1086
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1042 AAGTATCACAAGATTCAAGCAAAAGCTTC-ATATGGGGTGTGCCACTTCTCAAAGACGAC 1100
Query 1087 AGAACCGACGTCGTTTTGTTAAAGTTTCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1146
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1101 AGAACCGACGTCGTTTTGTTAAAGTTCCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1160
Query 1147 TACTCAATGCTAAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTA 1206
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TACTCAATGCTCAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTC 1220
Query 1207 GACGAAAACCTCGGTGACGATTTAGACAAAGTTGTGTTCATGCAAGGACAAGACAAGGAG 1266
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1221 GATGAAAACCTCGGTGACGATTTAGACAAGGTTGTGTTCATGCAAGGACACGACAAAGAC 1280
Query 1267 AATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1326
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1281 AATCATCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1340
Query 1327 ACGTTTTCAGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1386
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 ACGTTTTCTGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1400
Query 1387 AAGAGTATCAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1446
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 AAGAGTATAAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1460
Query 1447 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1520
Query 1507 CTTCATCTTCTTCAAGACAATTACCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1566
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1521 CTTCATCTTCTTCAAGACAATTATCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1580
Query 1567 CCATGGTGGTACCTTGCGTTCTATAGAATTATTAGTCCTTTTATGTCACAAAGGTCAAAG 1626
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1581 CCATGGTGGTACCTTGCGTTCTATAGGATTATTAGTCCTTTTATGTCACAAAGATCAAAG 1640
Query 1627 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTCTCAAGTACATATCA 1686
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1641 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTTTCAAGTACATATCG 1700
Query 1687 CCCGAACATGTCCCGGTTCAGTATGGTGGACTAAGTGTGGATAATTGCGAGTGTAACTCG 1746
|| |||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1701 CCAGAACATGTTCCGGTTCAGTATGGTGGACTAAGTGTGGATAACTGCGACTGCAACTCC 1760
Query 1747 GATTTCACACACGATGATATCGCTACCGAGATTACTGTTAAACCAACTACTAAACAAACC 1806
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1761 GATTTCACACACGATGATATCGCTACCGAGATTACTATTAAACCAACTACTAAACAAACC 1820
Query 1807 GTCGAGATTATTGTTTACGAGAAATGTACAATCGTGTGGGAGATAAGAGTAGTGGGATGG 1866
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1821 GTCGAGATTATTGTTTACGAGAAATGCACGATCGTGTGGGAGATAAGAGTAGTGGGATGG 1880
Query 1867 GAGGTTTCGTATGGAGCGGAGTTTGTGCCGGAGAACAAAGAAGGGTATACAGTGATCATT 1926
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1881 GAGGTTTCATATGGAGCAGAGTTTGTGCCGGAGAATAAAGAAGGGTATACGGTGATCATT 1940
Query 1927 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTT 1986
|||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1941 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACCGGTAGTGTCTCAGAGCTTCAAAGTT 2000
Query 1987 GGAGAAGTTGGCAGGATTTTGCTAACTGTTGATAACCCGACTTCGACCAAGAAAATGCTT 2046
|||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||
Sbjct 2001 GGAGAAGTTGGCAGGATTTTGCTAACCGTGGATAACCCGAATTCAACCAAGAAAATGCTT 2060
Query 2047 ATCTACAGGTTCAAGGTTAAGCCTTTAGCT-TGTGAGTAACAAAAGCCGCATCTTTCGTC 2105
||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
Sbjct 2061 ATCTACAGGTTCAAGGTTAAGCCTTTA-CTATGTGAGTAACAAAAGTCGCATCTTTC-T- 2117
Query 2106 TGAGTGTTTCTTAGTTTAGAACTT-GATCATATGATTGTTGATTGTGTTTTGTTTTTCTC 2164
|||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| ||
Sbjct 2118 TGAGTGTTTCTTAGGTTAGAACTTTGATCATATGATTGTTGGTTGTGTTTT-TTTTT-TC 2175
Query 2165 TCTTTT-ACCGACTTATATGTTTGTGTGGTTCTGTTTGCTAAATTCttttgttttatatt 2223
| || | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2176 T-TTGTCACCTACTTATATGTTTGTTTGGTTCTGTTTGCTAAATTCTTTTGTTTTATATT 2234
Query 2224 -gtattttgctctcttattttttatttttCAGTTTGCTTCCAAATTTCACTGAGGAATGT 2282
|||||||||||||||||||||| || |||||||||||||||||| |||| ||||
Sbjct 2235 TGTATTTTGCTCTCTTATTTTTT------CATTTTGCTTCCAAATTTCACCGAGGTATGT 2288
Query 2283 TTTTGACTTTTGAGTGTTGAATGGCTTTTAAAGGAAACC 2321
||| ||||||||| |||||||||||||||||||||||||
Sbjct 2289 TTT-GACTTTTGATTGTTGAATGGCTTTTAAAGGAAACC 2326
Score = 191 bits (103), Expect = 2e-47
Identities = 155/179 (87%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 398 CGGCGGA-G--GATTCAGAGCAGACACATGAAGTGACGCCGGAGAAAGAGACTGT-GAAA 453
||||||| | ||||||||| || ||||| ||||||||||||| | | |||| | |
Sbjct 271 CGGCGGAGGTTGATTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACT-TCGGTG 329
Query 454 TCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAG 513
|||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 330 TCAGAGGGTCTTAACCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAG 389
Query 514 ACAGAGACTGT-GAAGTCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGCAGCCAC 571
||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 390 ACAGAGACT-TCGAAGCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCAC 447
> Ahg316186 jgi|Araly1|316186|fgenesh1_pm.C_scaffold_2001219
Length=1494
Score = 438 bits (237), Expect = 7e-122
Identities = 775/1028 (75%), Gaps = 64/1028 (6%)
Strand=Plus/Plus
Query 1075 CTCAAAGACGACAGAACCGACGTCGTTTT-GTTAAAGTTTCTAAGAGCAAGAGACTTTAA 1133
||| ||||||| |||| |||||||||||| | ||| || |||||||| || || ||| |
Sbjct 493 CTCGAAGACGATAGAAGCGACGTCGTTTTACTGAAA-TTCCTAAGAGCTAGGGA-TTTCA 550
Query 1134 ACCT-CAAGAAGC-TTACTCAATGCTAAACAAGACAC-TCCAATGGAGAATCGACTTCAA 1190
| | |||| | || | ||||| || || || | | ||||||||| || |||||
Sbjct 551 AGGTGAAAGATTCGTT-GGCTATGCTCAAGAACAC-CGTTAAATGGAGAAGAGAGTTCAA 608
Query 1191 CATCGAAGAGCTT-CTAGACGAA-AACCTCGGT-GACGAT-TTAGACAAAGTTGTGTTCA 1246
||||| || || | || ||| || || || || ||| || ||||| |||||||| |
Sbjct 609 GATCGATGA-ATTGGTTGAGGAAGAA-CT-TGTGGATGATCTT-GACAAGGTTGTGTTTA 664
Query 1247 TGCAAGGACAAGA-CAAGGAGAATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCAG 1305
|||| ||||| || | || || ||| ||||| |||||||||||||| |||||||||||
Sbjct 665 TGCATGGACACGACCGAGAAG-GTCACCCTGTGTGTTACAATGTCTATGGTGAGTTTCAA 723
Query 1306 AACAAAGATCTTTATCAGAAAACGTTTTCAGATGAAGAGAAGA-GAGAACGGTTCTTG-A 1363
||||| || |||||| | || |||||||| ||||| || |||| || ||| |||||| |
Sbjct 724 AACAAGGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAAGAGGA-AACATTTCTTGAA 782
Query 1364 GATGGAGGATTCAGTTTCTT-GAAAAGAGTATCAGGAATCTTGATTTT-GTAGCTGGTGG 1421
|| ||||||||| ||||| || | |||||| ||||| || |||||| || |||||||
Sbjct 783 GA-CTAGGATTCAG-TTCTTGGAGAGGAGTATAAGGAAGCTAGATTTTAGT-TCTGGTGG 839
Query 1422 TGTTTCCACGATATGT-CAAGTAAATGATCTTAAGAATTCTCCAGGACCT-GGTAAGACT 1479
||||| || || | | || || |||||| | ||||||||||| || | || ||||
Sbjct 840 GGTTTCTACTAT-TTTCCAGGTTAATGATATGAAGAATTCTCC-GGGGTTGGGGAAGAAA 897
Query 1480 GAGCTTAGGTTAGCTACTAAGCAAGCTCTTCATCTT-CTTCAAGACAATTACCCTGAGTT 1538
|||||||| | |||||||||||||||| || | || |||||||||||||||||||||||
Sbjct 898 GAGCTTAGATCAGCTACTAAGCAAGCTGTTGA-GTTGCTTCAAGACAATTACCCTGAGTT 956
Query 1539 TGTCT-CTAAACAGA-TATTCATCAATGTTCCATGGTGGTACCTTGCGTTCTATAGAAT- 1595
||||| | |||||| | || ||||||||||| ||||||||||||| ||| | || | |
Sbjct 957 TGTCTTC-AAACAGGCTTTT-ATCAATGTTCCTTGGTGGTACCTTGTGTT-T-TACACTG 1012
Query 1596 T-ATTAGTCCTTTTATGTCACAAAGGTCAAAGAGCAAACTAGT-TTTCGCAGGTCCTTCA 1653
| ||| |||| || ||| ||| ||||||||||||||| || || ||| || ||||| |||
Sbjct 1013 TGATTGGTCCGTTCATGACACCAAGGTCAAAGAGCAAGCTTGTGTTT-GCTGGTCCATCA 1071
Query 1654 AGATCTGCAGAAACCCTTCTCAAGTACATATCACCCGAACATGTCCCGGTTCAGTATGGT 1713
| || || ||||| ||| |||| |||||||||||||| || || || |||||||| ||
Sbjct 1072 CGTTCAGCTGAAACACTTTTCAAATACATATCACCCGAGCAAGTTCCAGTTCAGTACGGA 1131
Query 1714 GGACTAAGTGTGGATAATTGCGAGTGTAACTCGGA-TTTCACACACGATGATATC-GC-T 1770
||| | ||||| ||| |||||| || ||| | || ||| | || ||| || || |
Sbjct 1132 GGATTGAGTGTAGATCCTTGCGACTGCAACCCAGACTTTT-CGTTGGAAGAT-TCAGCCT 1189
Query 1771 ACCGAGATTACTGTTAAACCAACTACTAAACAAACCGTCGAGATTATTGTTTACGAGAAA 1830
| ||||| |||||||| || || |||||||| || ||||| || | || ||||||
Sbjct 1190 -CAGAGATCACTGTTAAGCCTGGAACAAAACAAACTGTTGAGATCATAATCTATGAGAAA 1248
Query 1831 TGTACAA-TCGTGTGGGAGATAAGAGTAGTGGGATGGGAGGTTT-CGTATGGAG-CGGAG 1887
||| || | |||||||||||||| ||| | |||||||| || | || || | ||
Sbjct 1249 TGTG-AACTTGTGTGGGAGATAAGGGTAATTGGATGGGAAGTGAGC-TACA-AGGCCGAA 1305
Query 1888 TTTGTGCCGGA-GAACAAAGAAGGGTATACAGTGATCATTCAGAAACCGAGGAAGATGAC 1946
||||||||||| ||| ||||| | || || ||| | || |||||||| ||||||||||
Sbjct 1306 TTTGTGCCGGAAGAA-AAAGATGCTTACACGGTGGTTATACAGAAACCAAGGAAGATGAG 1364
Query 1947 TGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTTGGA-GAAG-TTGGCA-GGAT 2003
|| |||||| |||| | | |||||||||||||| | | || | |||||| || |
Sbjct 1365 ACCGTCCGATGAACCGGTGTTAACCCATAGCTTCAAAGT-GAATGA-GCTTGGCAAGG-T 1421
Query 2004 TTTGCTAACTGTTGATAACCCGACTTCGACCAAGAA-AATGCTTATCTACAGGTTCAAGG 2062
||| || || || || ||||| || || | ||||| || ||| | ||||||||||| |
Sbjct 1422 TTTACTCACAGTAGACAACCCAACCTCTAAGAAGAAGAA-GCTCGTTTACAGGTTCAATG 1480
Query 2063 TTAAGCCT 2070
| || |||
Sbjct 1481 TCAAACCT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5