BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09190.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895038 jgi|Araly1|895038|Al_scaffold_0006_3034 1642 0.0
> Ahg895038 jgi|Araly1|895038|Al_scaffold_0006_3034
Length=1131
Score = 1642 bits (889), Expect = 0.0
Identities = 1037/1109 (94%), Gaps = 8/1109 (1%)
Strand=Plus/Plus
Query 48 ATCTCAAAGAGAGCATATTCCTCTAGATCTAATCGTGGAGATAGTCTCAAGCCTGCCAGC 107
|||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |
Sbjct 27 ATCTCAAAGAGAGCATATTCCTCTCGATTTAATCGTGGAGATATTCTCAAGACTGCCATC 86
Query 108 AAAATCGATTGTGAGATTTAGGTCCGTTTCTAAGCTCTGGTCTTCAATCATCACCACTCC 167
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 87 AAAATCGATTGTGAGATTTAGGTCCGTTTCTAAGCTCTGGTCTTCAACCACCACCACTCC 146
Query 168 AGATTTCACCAGCTCGGTCGTGACACGGTCCTTGTCATCGCGTCCTTGTGTTCTGCTAAT 227
| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 147 ATATTTCACCAGCTCTGTCGTGACACGGTCCTTGTCATCGCGGCCTTGTGTTCTGCTAAA 206
Query 228 CTTCCA-AAAACACGACAAGCTGtttttttttGCTTCTCCAGTACACCAGAAGAAGACTT 286
||| || |||| ||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 207 CTT-CAGAAAAGACGACAAGCTGTTCTGTTTTGCGTCTCCAGTACACCAGAAGAAGACTT 265
Query 287 GTCCTA-ACGTGGAGAATTTTCAATATACAATCCCCAATAATGGTAAGCTTCAACGTTGT 345
|||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 266 GTCCTAGA-GTGGAGAATTTTCAATTTACAATCCCCAATAATGGTAAACTTCAACGTTAT 324
Query 346 GAATCCGTTCACGGCTTGATTTACTTGGAAACTTCTACAAATGTCATGTTTATCAGAAAC 405
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 325 GAATCCGTCCACGGCTTGATTTACTTGGAAACTTCTACAAATGTCATGTTTATTAGAAAC 384
Query 406 CCTATCACGAAAAGCTTCTTCACGTTACCTAAACTTGATAGCAAGGAAGGCAGACCACTA 465
||||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||
Sbjct 385 CCTATCATGAAAACCTTCTACACGTTACCGAAACTTGATAGCAACGAAGGCAGACCCCTA 444
Query 466 ACGGGATTTTTGGGATATGATCCAATCAACGGTAAATATAAAGTACTATGCATACTTAAA 525
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 445 ACGGGATTTTTGGGATATGATCCGATCAACGGTAAGTACAAAGTACTATGCATACTTAAA 504
Query 526 GA-ACGAAACAAGATTGGAATTCTTACATTGGGAGCTCAAGAATCATGGAGAATATTATC 584
|| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 505 GAGA-GAAACAAGATTGGGATTCTTACATTGGGAGCACAAGAATCATGGAGAATATTAAC 563
Query 585 TAAAGGTTTCCTTAGTCATTACAAAGTGACAGGTTATGCAAAATGCATTGATGGAGTCAT 644
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 564 TAAAGGCTTCCTTAGTCATTACAAAGTGACAGGTTGTGCAAAATGCATTGATGGAGTCAT 623
Query 645 CTACTATGAAGGTTCTTTTGGTGATGGTTTAAGACAAGAGCTTGCCATAATGAGTTTTGA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CTACTATGAAGGTTCTTTTGGTGATGGTTTAAGACAAGAGCTTGCCATAATGAGTTTTGA 683
Query 705 TTTAAGATCTGAAAAGTTCAGTTTGATTAAACATCCGAAGAAAAGTAGCATAGCTACATG 764
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 684 TCTAAGATCTGAAAAGTTCAGTTTGATTAAACATCCGAAGAAAAATAGCATAGCTACATT 743
Query 765 TTGGTCATCTTATGAGGGAAGATTAGCTTTGGTAAGTTCCATTGCTTCTGGAGTT-AGCT 823
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 744 TTGGTCATGTTATGAGGGGAGATTAGCTTTGGTAAGTTCCATTGCTTCTGGAGTTGAA-T 802
Query 824 TATGGATTTTGGAGGATGCTGATAATCACAAACAATGGATATATAAACATTTTCCTTCAC 883
|||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 803 TATGGATTTTGGAGGATGCTGAGAATCACAAACAATGGATATCTAAACAATTTCCTTCAC 862
Query 884 ATCGAGAATTCATCAAAGAGAGATGGAAGTTGAAGGGTGTTACTCGTACTGGTGAATTTA 943
|||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 863 ATCGTGAATTCATCAAAGGGAGATGGAAGTTGAAGGGTGTTACTCATACTGGTGAATTCA 922
Query 944 TTTACACATCTTACAGAGCTTATGTACTTAATGTTGAAGGAAGGGTTTTATATCAATGGT 1003
||||||||||||| ||| ||||| |||||| ||| || |||| |||||||||| ||||
Sbjct 923 TTTACACATCTTATAGATCTTATTTACTTACGGTTTCAGAAAGGATTTTATATCATTGGT 982
Query 1004 TCCGTATTTTGTATGTTGATCCCAAGAGAAACAGTATGAGGGTAGTTATGCATGGAGGAA 1063
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 983 TCCGTATTTTGTATGTTGATCCGAAGAGAAACAGTATGAGGGTAGTTATGTATGGAGGAA 1042
Query 1064 TTGCAGTTGACGATATTAGGCGACTTGATGAAGTTGGATATGATCTTATGAAAGACTTGA 1123
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1043 TTGCCGTTGACGATATTAGGCGACTTGATGAAGTTGGATCTGATCTTATGAAAGGCTTGA 1102
Query 1124 CTGTCATACCAAATCACATTCAGATTTGA 1152
|||||||||||| ||||||| ||||||||
Sbjct 1103 CTGTCATACCAAGTCACATTGAGATTTGA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5