BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09320.1 Length=700 Score E Sequences producing significant alignments: (Bits) Value Ahg489792 jgi|Araly1|489792|fgenesh2_kg.6__2926__AT4G09320.1 774 0.0 > Ahg489792 jgi|Araly1|489792|fgenesh2_kg.6__2926__AT4G09320.1 Length=552 Score = 774 bits (419), Expect = 0.0 Identities = 493/528 (93%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 48 TTTTTGCCTCCTACGAATCACAAGTAATAAGAAAACAATGGAGCAAACTTTTATTATGAT 107 |||||||||||||||| |||||||||| | |||| ||||||||||||||| || ||||| Sbjct 25 TTTTTGCCTCCTACGAGTCACAAGTAAGCA-AAAA-AATGGAGCAAACTTTCATCATGAT 82 Query 108 CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTGCAGGTTTGAGAAGAA 167 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 83 CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTCCAGGTTTGAGAAGAA 142 Query 168 GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGAGATCTTTTGCTGAGAAGCA 227 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 143 GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGCGATCTTTTGCTGAGAAGCA 202 Query 228 CTACGAAGACTTATCTTCAAAGTCTTTCTTCAGTGGACTCGTTGACTACATTGTATCCGG 287 |||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| || || Sbjct 203 CTACGAAGACTTGTCTTCAAAGCCTTTCTTCAGTGGACTTGTTGATTACATTGTGTCTGG 262 Query 288 CCCTGTTGTTGCTATGATCTGGGAAGGAAAGAATGTTGTCTTGACCGGAAGAAAGATCAT 347 |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 263 CCCTGTTGTTGCCATGATCTGGGAAGGAAAGAATGTTGTGTTGACGGGAAGAAAGATTAT 322 Query 348 TGGAGCTACCAACCCAGCAG-CTTCTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG 406 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 323 CGGAGCTACCAACCCAGCAAACT-CTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG 381 Query 407 ACATTGGCAGGAACGTGATCCATGGTAGTGACTCTGTCGAGAGTGCAAGAAAGGAGATTG 466 ||||||||||||| || ||||| || |||||| ||||||||||||| ||||||||||||| Sbjct 382 ACATTGGCAGGAATGTTATCCACGGGAGTGACGCTGTCGAGAGTGCGAGAAAGGAGATTG 441 Query 467 CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGCGTTCACCCTTGGGTCTATG 526 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 442 CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGTGTTCACCCTTGGATCTATG 501 Query 527 AA--A-CTTGATGATCTGTTGCTTTTTCAGTAGTGTGTTTTCGACATT 571 || | ||||||||||||||||||||||| |||||||||||||||||| Sbjct 502 AATGATCTTGATGATCTGTTGCTTTTTCAATAGTGTGTTTTCGACATT 549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25732968975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5