BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09320.1
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489792 jgi|Araly1|489792|fgenesh2_kg.6__2926__AT4G09320.1 774 0.0
> Ahg489792 jgi|Araly1|489792|fgenesh2_kg.6__2926__AT4G09320.1
Length=552
Score = 774 bits (419), Expect = 0.0
Identities = 493/528 (93%), Gaps = 7/528 (1%)
Strand=Plus/Plus
Query 48 TTTTTGCCTCCTACGAATCACAAGTAATAAGAAAACAATGGAGCAAACTTTTATTATGAT 107
|||||||||||||||| |||||||||| | |||| ||||||||||||||| || |||||
Sbjct 25 TTTTTGCCTCCTACGAGTCACAAGTAAGCA-AAAA-AATGGAGCAAACTTTCATCATGAT 82
Query 108 CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTGCAGGTTTGAGAAGAA 167
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 83 CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTCCAGGTTTGAGAAGAA 142
Query 168 GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGAGATCTTTTGCTGAGAAGCA 227
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 143 GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGCGATCTTTTGCTGAGAAGCA 202
Query 228 CTACGAAGACTTATCTTCAAAGTCTTTCTTCAGTGGACTCGTTGACTACATTGTATCCGG 287
|||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| || ||
Sbjct 203 CTACGAAGACTTGTCTTCAAAGCCTTTCTTCAGTGGACTTGTTGATTACATTGTGTCTGG 262
Query 288 CCCTGTTGTTGCTATGATCTGGGAAGGAAAGAATGTTGTCTTGACCGGAAGAAAGATCAT 347
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 263 CCCTGTTGTTGCCATGATCTGGGAAGGAAAGAATGTTGTGTTGACGGGAAGAAAGATTAT 322
Query 348 TGGAGCTACCAACCCAGCAG-CTTCTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG 406
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 323 CGGAGCTACCAACCCAGCAAACT-CTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG 381
Query 407 ACATTGGCAGGAACGTGATCCATGGTAGTGACTCTGTCGAGAGTGCAAGAAAGGAGATTG 466
||||||||||||| || ||||| || |||||| ||||||||||||| |||||||||||||
Sbjct 382 ACATTGGCAGGAATGTTATCCACGGGAGTGACGCTGTCGAGAGTGCGAGAAAGGAGATTG 441
Query 467 CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGCGTTCACCCTTGGGTCTATG 526
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 442 CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGTGTTCACCCTTGGATCTATG 501
Query 527 AA--A-CTTGATGATCTGTTGCTTTTTCAGTAGTGTGTTTTCGACATT 571
|| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 502 AATGATCTTGATGATCTGTTGCTTTTTCAATAGTGTGTTTTCGACATT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25732968975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5