BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09340.1
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942709 jgi|Araly1|942709|scaffold_603253.1 2052 0.0
Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664 318 8e-86
> Ahg942709 jgi|Araly1|942709|scaffold_603253.1
Length=1385
Score = 2052 bits (1111), Expect = 0.0
Identities = 1278/1359 (94%), Gaps = 10/1359 (1%)
Strand=Plus/Plus
Query 20 TATCTTCTCTGCGATTTGAATGAACAAATCCAACTTCATTCACAAATTTCATCACTCTGC 79
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 TATATTCTCTGCGATTTGAATGAACAAATCCAACTTCATTCACAAATTTCGTCACTCTGC 62
Query 80 AAAACCACATACAATGGAAGATAACGAAGAAGAAGAAGAATCACCGACGGAGTTAAACAC 139
||||||| ||| |||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 63 AAAACCATATAAAATGGAAG---AC---GAAGAAGAAGAATCACCAACGGAGCTAAACAC 116
Query 140 GATCACCGGTTTAAGCGGTTTTGTAGTTATCTCTCCCGATAAGCTATCTCTCAAATACAC 199
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GATCAATGGTTTAAGCAGTTTTGTAGTTATCTCTCCCGATAAGCTATCTCTCAAATACAC 176
Query 200 TGGCGTTTCTCAACACGGTCACGATGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTG 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGGCGTTTCTCAACACGGTCACGATGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTG 236
Query 260 TAAACGTTTCGCTTATTACTTCGAGATTTATGTTAAAGATGCTGGTGTTAAAGGACGTGT 319
||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 237 TAATCGTATCGCTTATTACTTCGAGATTTATATCAAAGATGCTGGTGTTAAAGGACGTGT 296
Query 320 CTCCATTGGTTTCACTACTAATAGTTTCAGAATCGCGAGACATCCTGGATGGGAACTCAA 379
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 CTCTATTGGTTTCACTACTGATAGTTTCAGAATTGCGAGACATCCTGGATGGGAACTCAA 356
Query 380 CACTTGTGGTTATCATGGTGAAGATGGGCTTATATATCTAGGAAAACGTCAAGGTGAAGC 439
||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||
Sbjct 357 CACTTGTGGTTATCATGGTGATGATGGACTTATATATCTTGGAAAACGACAAGGTGAAGC 416
Query 440 TTTTGGTCCGACTTATACAACTGGTGATACTGTTGGTGGTGGTATAAACTATGATTCGCA 499
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 417 TTTTGGTCCGACTTATACAACCGGTGATACAGTTGGTGGCGGTATAAACTATGATTCGCA 476
Query 500 GGAATTCTTTTTCACTGTAAATGGAACTCTGGTAGGGACAGTCTCCAAGTACATCAAGGG 559
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 477 GGAATTCTTTTTCACCGTAAATGGAACTCTTGTAGGGACAGTCTCGAAGTACATCAAGGG 536
Query 560 TCCTCTATTCCCTACTGTAGCTGTACATAGCCAAAACGAAGAGGTTACAGTCAACTTCGG 619
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 537 TCCTCTATTTCCTACTGTAGCTGTACATAGCCAAAACGAGGAGGTTACCGTCAACTTTGG 596
Query 620 GCAGGAGAAGTTTGCCTTTGATTTTAAGGGATATGAATCATCGGAGAGGAATAAGCAACA 679
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCAGGAGAAGTTTGCTTTTGACTTTAAGGGATATGAATCATCGGAGAGGAATAAGCAACA 656
Query 680 AATAGCAATCGAAAAGATATCCATACCATCGAACATGAGTCTTGGGCTTGTAAAGAACTA 739
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 AATAGCAATTGAAAAGATATCCATACCTTCGAACATGAGTCTTGGGCTTGTAAAGAACTA 716
Query 740 TTTGCTTCATTATGGGTATGAAGAGACTCATCATGCTTTAGACTTGGCTACTAACAGTAC 799
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 717 CTTGCTTCATTATGGGTATGAAGAGACTTTTCGTGCTTTAGACTTGGCTACTAACAGTAC 776
Query 800 ACTTCCTCCTATCAATGGAGCTCAAGAAAATGGTATTGATGATACATCATATGCATTGCA 859
| |||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct 777 AGTTCCTCCTATTAATGGAACTCAAGAAGATGGTATTGAAGATACATCATATGCATTGCA 836
Query 860 TGAGAGAAAAA-TTCTTAGACAGCTTATACGGAAGGGTGAGATCGATGCTGCTCTTGCGA 918
||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 837 TGAGAGAAAAAATT-TTAGACAGCTTATAGGGAAGGGTGAGATTGATGCTGCTCTTGCGA 895
Query 919 AACTCCGAGATAGCTATCCCCAACTTGTACAGAACGATAAATCAGAAGTATGCTTCCTCC 978
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 AACTCCGAGATAGCTATCCCCAACTTGTACAGAACGATAAATCAGAAGTGTGCTTCCTCC 955
Query 979 TTCACTGTCAAAAGTTCATTGAATTAGTACGGATTGGAGCACTAGAAGAGGCTGTGAAAT 1038
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 956 TTCACTGTCAAAAGTTCATTGAATTAGTACGGATTGGAGCACTCGAAGAAGCTGTGAAAT 1015
Query 1039 ATGGACGAATGGAATTAGCCAAATTCATTGGTTTAACTACATTCCAAGACATTTTAGAGG 1098
||||| || ||||||||||||||||| |||||||| || | |||||||||||| ||||||
Sbjct 1016 ATGGAAGAGTGGAATTAGCCAAATTCCTTGGTTTAGCTGCTTTCCAAGACATTGTAGAGG 1075
Query 1099 ACTGCTTTGCTTTGCTAGTGTACGAACGCCCCGAAGAATCGAATGTAGGGTATTTCCTAG 1158
||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1076 ACTGCTTTGCTCTGCTAGTGTATGAACGCCCCCAAGAATCGAATGTAGGGTATTTCCTAG 1135
Query 1159 AAGAGACTCAAAGGGAAGTAGTGGCAGACACAGTGAATGCTGCGATTTTATCTACAAAAC 1218
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1136 AAGAGTCTCAAAGGGAAGTAGTGGCAGACGCAGTGAATGCTGCGATTCTATCTACAAATC 1195
Query 1219 CAAAGGGCAAAAATCAATCGCATTCTCATCTAGAGACACTTCTCCGACAACTAACAGCTT 1278
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 CAAACAACAAAAATCAATTGCATTCTCATCTAGAGACACTTCTCCGACAGCTAACAGCTT 1255
Query 1279 GCTGTCTGGAACTGCGGTCGCTTAACGATGGTCAAGGAGAAGCGTTCTCGCTTAACCGAC 1338
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1256 GCTGTCTGGAACTGCGGTCACTTAACGATGGTCAAGGAGAAGCGTTCTCGCTTCACCGGC 1315
Query 1339 TTCTTA-GAACCAACAATTGGAAGAGGACAAAAAAGACT 1376
|||||| || ||| |||||||||||||||||||||||||
Sbjct 1316 TTCTTACGA-CCACCAATTGGAAGAGGACAAAAAAGACT 1353
> Ahg913410 jgi|Araly1|913410|Al_scaffold_0001_3664
Length=1455
Score = 318 bits (172), Expect = 8e-86
Identities = 435/558 (78%), Gaps = 34/558 (6%)
Strand=Plus/Plus
Query 108 GAAGAAGAAGAATCACCGACGGAG-TTAAACACGATCACCGGTTTAAGCGGTTTTGTAGT 166
|||| |||||| | |||||||||| || |||||||||| | |||| ||| | ||
Sbjct 133 GAAGGAGAAGATTTACCGACGGAGCTT-AACACGATCAATAGCGCCGGCGGGTTTCTTGT 191
Query 167 TATCTCTCCCGATAAGCTATCTC-TCAAATACACT--GGCGTTTCTCAACACGGTCACGA 223
| ||||| |||||||| || | | || |||||| || ||| ||| ||||||||
Sbjct 192 GGTTTCTCCGGATAAGCTTTC-CGTGAAGTACACTAATACGAATCT--ACATGGTCACGA 248
Query 224 TGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTGT-AAACGT-TTCGCTTATTACTTC 281
||| || ||||||||||||||||||||||||||| | || || || |||| |||||
Sbjct 249 TGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCG-ATCAAGTGTCTT-ACTTACTACTTT 306
Query 282 GAGATTTATGTTAAAGATGCTGGTG-TTAAAGGACGTGTCT-CCATTGGTTTCACT-ACT 338
||||||| |||||||||| |||| | ||||||| | | | | |||||||| ||| |
Sbjct 307 GAGATTTTTGTTAAAGATTCTGG-GATTAAAGGTCAAAT-TGCTATTGGTTTTACTAAGG 364
Query 339 AATAGTTTCAGAATCGC-GAGACATCCTGGATGGGAACTCAACA-CTTGTGGTTATCATG 396
|| || |||| ||| || |||||| |||||||||||| | |||| | ||||| |||||||
Sbjct 365 AA-AGCTTCAAAAT-GCGGAGACAACCTGGATGGGAAGTGAACAGC-TGTGGCTATCATG 421
Query 397 GTGAAGATGGGCTT-ATATATC-TAGGAAAACGTCAAGGTGAAGCTTTTGGTCCGACTTA 454
| || ||| || || |||||| | ||| | | |||||||| |||||||||||| ||
Sbjct 422 GGGATGAT-GGATTCCTATATCGT-GGACAGGGGAAAGGTGAACCTTTTGGTCCGAAGTA 479
Query 455 TACAACTGGTGATACTGTTGGTGGTGGTATAAACTATGATTCGCAGGAATTCTTTTTCAC 514
||||| | |||||| ||||| |||||||||||||||| |||||| || |||||||||||
Sbjct 480 TACAAAAGATGATACAGTTGGCGGTGGTATAAACTATGCTTCGCAAGAGTTCTTTTTCAC 539
Query 515 TGTAAATGGAACTCTGGTAGGGACAGTCTCC-AAGTACATCAAG-GGTCCTCTATTCCCT 572
| ||| ||| || | || |||| | || || ||| |||| ||| |||| ||||||||||
Sbjct 540 TAAAAACGGAGCTATTGTTGGGAAAATC-CCTAAGGACAT-AAGAGGTCATCTATTCCCT 597
Query 573 ACTGTAGCTGTACATAGCCAAAACGAAGAGGT-TACAGTCAACTTCGGGCAGGAGAAGTT 631
||||||||||||||||||||||| || ||||| | ||||||| || ||| || |||| ||
Sbjct 598 ACTGTAGCTGTACATAGCCAAAATGAGGAGGTAT-CAGTCAATTTTGGGAAGAAGAAATT 656
Query 632 TGCCTTT-GATTTTAAGG 648
||| ||| ||| ||||||
Sbjct 657 TGC-TTTCGATATTAAGG 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67381643405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5