BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09350.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942711 jgi|Araly1|942711|scaffold_603255.1 1134 0.0
> Ahg942711 jgi|Araly1|942711|scaffold_603255.1
Length=784
Score = 1134 bits (614), Expect = 0.0
Identities = 722/773 (93%), Gaps = 12/773 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTATGCAACTTCTACCTATGCACGAACCTCATGCATTATCCTACCCAAAATCCAA 60
||||||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 21 ATGGCTTATGCAATTTCTACCTATGCTCGAACGTCCTGCATTATCCTTCCCAAAATCCAA 80
Query 61 AACGGCGCGCATTTCACGGATGACACGAA-AGCATTTAGAAGGATAACAGCAAGAAGAGT 119
|||||| ||||||| | ||| || || || |||||||||||||||||| |||||||||||
Sbjct 81 AACGGCACGCATTTTAGGGACGATAC-AAGAGCATTTAGAAGGATAACGGCAAGAAGAGT 139
Query 120 GACGCGTATATACGCGTCACAAGGCCCGACTAAACCGT-CAAAACCATCTCCAGGAGTAG 178
|| || |||||||||||||||||||| ||||| | |||||||||| ||||||||||
Sbjct 140 GA--CG----TACGCGTCACAAGGCCCGACAAAACC-TCCAAAACCATCGCCAGGAGTAG 192
Query 179 ACACAAGAATCCACTGGGAAAGCCCGGACGAAGGCTGGATCGGAGGAAGATCCGACCCGG 238
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 193 ACACAAGAATCCACTGGGAAAGCCCGGACGAAGGCTGGATCGGAGGAGGATCCGACCCGA 252
Query 239 CCAAATCGGTTGATGAGGACAAAACCAATCTCCTTAGTGACGAAAAATTTGCAGAACTAA 298
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 253 CCAAATCCGTTAATGAGGACAAAACCAATCTCCTTAGTGATGAAAAATTTGCAGAACTAA 312
Query 299 TCAAAGACTCTTTTGATTCTCATTACCAATTCTTAGGTGTTTCAACGGATGCTGATCTAG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCAAAGACTCTTTTGATTCTCATTACCAATTCTTAGGTGTTTCAACGGATGCTGATCTAG 372
Query 359 AAGAGATAAAATCTGCGTACCGGAGATTATCTAAAGAGTATCATCCAGATACAACTTCAC 418
||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 373 AAGAGATAAAATCCGCGTACCGAAGATTATCAAAAGAGTATCATCCCGACACAACTTCAT 432
Query 419 TACCACTTAAAACAGCTTCAGAAAAGTTCATGAAATTAAGAGAAGTGTACAATGTTTTGA 478
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 433 TACCACTTAAAACAGCTTCAGACAAGTTCATGAAACTAAGAGAAGTGTACAATGTTTTGA 492
Query 479 GCGATGAAGAGACTCGGAGGTTTTATGACTGGACACTGGCTCAAGAAGTTGCGAGTCGTC 538
|||||||||||||||||||||| |||||||||||| |||||||||| || ||||||||||
Sbjct 493 GCGATGAAGAGACTCGGAGGTTCTATGACTGGACATTGGCTCAAGAGGTCGCGAGTCGTC 552
Query 539 AAGCTGAGAAAATGAGAATGAAGCTAGAGGATCCGAAAGAGCAAGATTTTAGGGGCTATG 598
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 553 AAGCTGAGAAGATGAGAATGAAGCTTGAGGATCCGAACGAGCAAGATTTTAGGGGCTATG 612
Query 599 AATCAATACCTGATATGGTTGACCGGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AATCAATACCTGATATGGTTGACCGGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAG 672
Query 659 CAATGACTGCTCTCACGTTCGATATTTTGATCGTATTATTCGCTGTTTGTTGTATAGCT- 717
| ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||| |
Sbjct 673 CCATGACTGCTCTCACGTTCGATGTTTTGATCATAGTATTCGCGGTTTGTTGTATAG-TG 731
Query 718 TTTGTGATTGTTTTCAAAGATCCTTCTTACTAGGTAAGGAGCTTTGTATATAC 770
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TTTGTGCTTGTTTTCAAAGATCCTTCTTACTAGGTAAGGAGCTTTGTATATAC 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5