BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09360.1
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977 867 0.0
Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975 84.2 4e-15
> Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977
Length=3510
Score = 867 bits (469), Expect = 0.0
Identities = 647/732 (88%), Gaps = 15/732 (2%)
Strand=Plus/Plus
Query 1175 ATATCAGAAAAGGCTGTCCTTCC-AGAACGTGGACTAAGGCGACGCCGACAAATAATATT 1233
|||||||||||| ||||| ||| ||||| |||||| |||||||| || |||||||||||
Sbjct 2095 ATATCAGAAAAGATTGTCC-TCCGAGAACCTGGACTCAGGCGACGGCGGCAAATAATATT 2153
Query 1234 GAGGCTTCCCAGAGGAGTAAAGAAGCTGAGTTCTCTT-GCAAACCTATCTATAGAAGGGA 1292
||| |||||||||| ||||||||| || | |||| || ||||||||||| ||||| ||||
Sbjct 2154 GAGACTTCCCAGAGCAGTAAAGAAACTAAATTCT-TTGGCAAACCTATCCATAGAGGGGA 2212
Query 1293 AGATACACATCGGCTTGTGGCATCTCACGGG-AACCGTAGAGCACCTCTCCTTTA-TTCC 1350
| ||| ||||||| |||||| || ||| ||| || | |||||| |||||||||| || |
Sbjct 2213 AAATAAACATCGGGTTGTGGGATATCATGGGCAA-TGCAGAGCATCTCTCCTTTATTTAC 2271
Query 1351 GAGCAAAAAATCCCTGATG-A-AT-TGGTAATGGTGCCAAAGAAAAGATTTCCGATCATC 1407
|||||| |||| ||||| | | || ||||||| | |||||| ||||| ||||| |||||
Sbjct 2272 GAGCAACAAATTCCTGAGGAATATATGGTAAT--T-CCAAAGGAAAGACTTCCGTTCATC 2328
Query 1408 TCAAGCTTTTATGATCTTAAATCTCTCAGCATCATGCG-GTTTAGCCACATTGCAGATGG 1466
|||||||| |||||| ||||||| || || |||| ||| | ||||| ||| ||||||||
Sbjct 2329 TCAAGCTTCTATGATTTTAAATCGCTGAGTATCAAGCGAG-TTAGCTACAGCGCAGATGG 2387
Query 1467 TACCCCCTTCCGTTGCATTAGCTTCTCAGGTTTCCAGTGCTTGGTAGAGTTGAATCTGAT 1526
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 2388 TGTCCCCTTCCGTTGCATTAGCTTCTCAGCTTTCCCGTGCTTGGTAGAGTTGAATCTAAT 2447
Query 1527 CAACTTAAACATCCAGAAAATCCCAGACAACATTGGTCTAATGCAGTCACTAGAGAAAGT 1586
||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 2448 CAACTTAAATATCCAGAAAATCCCAGTCGACATTGGTCTAATGCAGTCACTAGAGAAACT 2507
Query 1587 GGACCTCAGCGGAAATGATTTCAGGAATCTACCCGCATCAACAAAGAACCTTTCGAAGTT 1646
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 2508 GGACCTCAGCGGAAATGATTTCAGGAGTTTACCCGCATCAACGAAGAACCTTTCGAAGTT 2567
Query 1647 GAAATACGCGAGGCTCTCTAATTGCATCAAACTCGAGGCATTTGTAGAGCTGACTGAGTT 1706
|||||||| |||||||| |||||||||||||||| || ||||| |||| ||||||||||
Sbjct 2568 GAAATACGTGAGGCTCTTTAATTGCATCAAACTCAAGACATTTCCAGAGTTGACTGAGTT 2627
Query 1707 GCAGACGCTCAAGCTTTCTGGTTGTACGAACCTCGAATCTCTGCTGGAACTTCCTTATGC 1766
|||||||||||||||||| || ||| | ||||||||||| |||||||||||||||| |||
Sbjct 2628 GCAGACGCTCAAGCTTTCCGGCTGTTCCAACCTCGAATCACTGCTGGAACTTCCTTGTGC 2687
Query 1767 GGTTCAAGATGTAGGCAGATTCTGTTTGCTAGCGCTTGAGCTTGATAACTGCAAGAATCT 1826
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2688 AGTTCAAGATGAAGGCAGATTCTGTTTGCTAGAGCTTGAGCTTGATAACTGCAAGAATCT 2747
Query 1827 CCAAGCATTATCAGAACAGCTAAGCCATTTCAGCAATTTAATACACTTGGACCTAAGCAG 1886
||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 2748 CCAAGCATTGTCAGAACAGCTTAGCCGTTTCACCAATTTAATACACTTGGACCTAAGCAG 2807
Query 1887 CCACGACTTTGA 1898
||||||||||||
Sbjct 2808 CCACGACTTTGA 2819
Score = 828 bits (448), Expect = 0.0
Identities = 563/618 (91%), Gaps = 9/618 (1%)
Strand=Plus/Plus
Query 1898 AGAAACTCAAATCAGTGGAAGAGCTTCCACTAAA-CCTCAAGCATCTCTACGCACACGGC 1956
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2882 AGAAACTCAAATCAGTGGAAGAGCTTCCAC-AAAGCCTCAAGCATCTCTACGCACACGGC 2940
Query 1957 TGTGATTCCCTGGAAAGTGTCGACCTTTCCCCAAAGCATTCAATCAAACACCTCGATCTT 2016
|| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2941 TGCGATTCCCTGGAAAATGTATCCCTTTCCCCAAATCATTCAATCAAACACCTCGATCTT 3000
Query 2017 AGCCATTGCTTCGGTTTGCAACAAGATGAGCAACAGATTACACAATTTCTAAACGACAAG 2076
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 3001 AGCCATTGCTTCGGTTTGCAACAAGATGAGCAACTGCTTACACGGTTTCTAAACGACAAA 3060
Query 2077 TGTAGCCAAGAGGTTTCACAAAGATTTCTTTGCTTACCAGGAACTGAAGTACCCAGAAAT 2136
||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||
Sbjct 3061 TGTAGCCAAGAGGTTTCACAACGATTTCTTTGCTTACCCGGAAATGAAGTGCCCAGAAAT 3120
Query 2137 TTCGATAATCAGTCACATGGGACATCGACGAAGATCAGCTTGTTTACACCGACACTTCTG 2196
||||||||||| || ||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 3121 TTCGATAATCAATCCCATGGAACATCTACGAAGATCAGCCTGTTTACACCGACCCTTCTG 3180
Query 2197 AGTTTCGCTGCCTGTATCTTGATTTCTTGCGAGAGGTCCTTCTACCTCCAATTCCCAGCG 2256
|||| ||||| ||||||||||||||||| |||||||||||| | |||||||||||||||
Sbjct 3181 GGTTTTGCTGCTTGTATCTTGATTTCTTGTGAGAGGTCCTTCAATCTCCAATTCCCAGCG 3240
Query 2257 TTTAGTTATGATTGGAACCGCAAAGATGATGAAGTAATTTCGATTAACCTCACACCAAAT 2316
||||||||||| |||||| || ||| |||||||||||||| ||||||||||| |||||||
Sbjct 3241 TTTAGTTATGACTGGAACAGCGAAGCTGATGAAGTAATTTGGATTAACCTCAAACCAAAT 3300
Query 2317 CTCAATCTTTCATCGGAGATTGAGGAAGAAGAGACTGTAACATCACATCACCTGGTTATC 2376
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 3301 CTCAATCATTCATCGGAAATTGAGGAAGAAGAAACTGTAACATCACATCACCTGGTTATC 3360
Query 2377 ATCCACGTACCC-AGTAGCATAAACACCGACAAAATCGAAGATTTGCGACTCGAATCCTC 2435
|||||||| ||| |||||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct 3361 ATCCACGT-CCCGAGTAGCTTAAACACCGAGAAAATCGAAGAGTTGCGACTCGAATCC-C 3418
Query 2436 -TCTTCAATTTCCAGAGGAG---TTTCAGTTTTCACCCTGCGAGATAAGAGCTTGTGGAA 2491
||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 3419 ATCTTCAACTTCCAGAGGAGGAGTTTCAGTTTCCACTAGGCGAGATAAGAGCTTGTGGAA 3478
Query 2492 TTCGCATGGTTGACGAAG 2509
||||||| |||||||||
Sbjct 3479 TTCGCATTATTGACGAAG 3496
Score = 743 bits (402), Expect = 0.0
Identities = 537/602 (89%), Gaps = 10/602 (2%)
Strand=Plus/Plus
Query 7 GTTGACATGGAACGACTGAATCCTCTATTGAGCATCGAATCTGAGAATGAGGTTCGTATG 66
||| |||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||
Sbjct 595 GTTCACATGGAACGACTGAATCCTCTATTGAGTATTGAATCGGAGGATGAGGTTCGTATG 654
Query 67 ATCGGAATCTGGGGAATGGGAGGCATAGGCAAAACCACCATTGCCAAGTGTCTCTATGAA 126
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 655 ATAGGAATCTGGGGAATGGGAGGCATCGGGAAAACCACCATAGCCAAGTGTCTCTATGAA 714
Query 127 GAATATTCGCGCCGATTTGTTCACTATTGTTTCATAGAAAACGTTAGGATTTTTGCAAAG 186
||||||| || ||||||| ||| || |||||||||||||||||||||||| |||||||
Sbjct 715 AAATATTCACGTCGATTTGCTCATTACTGTTTCATAGAAAACGTTAGGATTGCTGCAAAG 774
Query 187 AATGGCCTCCCATATTTGCAGGAAAAGCTTCTATCTGAA-ATCCGAGGCAAA-AAGCAAG 244
||||||||||| ||||||||| ||||||| || || || ||| |||| ||| || ||||
Sbjct 775 AATGGCCTCCCGTATTTGCAGAAAAAGCTCCTTTC-CAATATCAGAGG-AAAGAAACAAG 832
Query 245 AGACCTTATGGAGCGTGGAGAAGGGATGCAGACT-TATCAAGTCGAAGCTCAAGGaaaaa 303
||||| ||||| |||||||||| |||||||| | ||||||||| ||||| ||||| |||
Sbjct 833 AGACCCTATGGTGCGTGGAGAAAGGATGCAG-TTGTATCAAGTCAAAGCTTAAGGATAAA 891
Query 304 aaTTTCCTTGTCCTTGACGATGTGGACAATGTGGACCAGCTGCATGCCCTAGCAAAAGAG 363
| ||||||||||||||| ||||||||| | |||||||||||||||||||| |||||| |
Sbjct 892 ATTTTCCTTGTCCTTGATGATGTGGACGACGTGGACCAGCTGCATGCCCTGGCAAAAAAT 951
Query 364 AC-GAGCTGGTTTGGACCAGGGAGCCGAATCATCATAACTACACGAGACTTTGGCTTACT 422
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 952 ACTG-GCTGGTTTGGACCAGGGAGCCGAATCATCATAACTACACGAGACTTTGGCTTGCT 1010
Query 423 CTACTCCTTTGGAGTGAGATTATTATACCGTGTTAGCTTTTTGGATGA-CAATGATGCTA 481
||||||||||||||||||||||||||||| ||| ||||||||||| | | ||||||||
Sbjct 1011 CTACTCCTTTGGAGTGAGATTATTATACCATGTCAGCTTTTTGGAC-ATCGGTGATGCTA 1069
Query 482 TCAAAGTCTTTAAACATGTTGCTTTTGACGGAGGGCAACCTCCTTTTGATGTCTACCATC 541
|| | ||||||||||| ||||||||||| ||||||||| |||||| |||||||||||| |
Sbjct 1070 TCCAGGTCTTTAAACAGGTTGCTTTTGAAGGAGGGCAAGCTCCTTCTGATGTCTACCAGC 1129
Query 542 AATTCTCAGTCCGTGCTTCTAGGCTTGCTCAAGGCCTTCCTTCAGCCCTTGAGGCTTTTG 601
|||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1130 AATTCTCAATCCGTGCTTCTAGGCTCGCTCAAGGCCTTCCTTCAGCCCTCGAAGCTTTTG 1189
Query 602 GC 603
||
Sbjct 1190 GC 1191
Score = 335 bits (181), Expect = 1e-90
Identities = 238/265 (90%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 607 TTGGGCATTCTTGAAACAGTTCCTCA-AAAACGTATCAAGGATATTTTAAAAACTAGCTA 665
||||| ||||||||||||||||| || ||| |||||| ||||||||| |||||||||||
Sbjct 1237 TTGGGTATTCTTGAAACAGTTCCCCACCAAA-GTATCATGGATATTTTGAAAACTAGCTA 1295
Query 666 TGACGGTTTAGACGAGGAAGAGCAAGCTGCGTTCCTTCATGTTGCATGTCTATTCAATGG 725
|||||||||||| ||| |||| || |||||||||||||| |||||||| || ||||||||
Sbjct 1296 TGACGGTTTAGATGAGCAAGAACAGGCTGCGTTCCTTCACGTTGCATGCCTCTTCAATGG 1355
Query 726 AGA-CTCTGTCCACCGGGTAAATGCCCTTATCGATGATGGTGACATGAGGATAAAAGCTT 784
| | ||||||||| || ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1356 A-ACCTCTGTCCAGCGTGTAAATGCCCTTATCGATGATGGTGACATAAGGACAAAAGCTT 1414
Query 785 TAGAAGTGAAGTCTCTCATAGACATATCACTTGATGGATGCATTAC-ATTGCATGTCTTG 843
|||||| ||||||||||||||| ||||||| |||||||||||| || || ||||||||||
Sbjct 1415 TAGAAGCGAAGTCTCTCATAGAAATATCACCTGATGGATGCATCACCAT-GCATGTCTTG 1473
Query 844 ATAGAACAAGCGGCAAGAGAAATTG 868
||||||||||| |||||||||||||
Sbjct 1474 ATAGAACAAGCAGCAAGAGAAATTG 1498
> Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975
Length=2781
Score = 84.2 bits (45), Expect = 4e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 45 ATCTGAGAATGAGGTTCGT-ATGATCGGAATCTGGGGAATGGGAGGCATAGGCAAAACCA 103
|||||| || |||||| | | || ||||| ||||| ||||||||||||||||||||||
Sbjct 615 ATCTGAAAACCAGGTTC-TCTTTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCA 673
Query 104 CCATTGCCAAGTGTCTCTATGA 125
|||||||||| ||||| |||||
Sbjct 674 CCATTGCCAATTGTCTATATGA 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96596861320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5