BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09450.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352012 jgi|Araly1|352012|fgenesh1_pg.C_scaffold_6002605 580 3e-165
> Ahg352012 jgi|Araly1|352012|fgenesh1_pg.C_scaffold_6002605
Length=600
Score = 580 bits (314), Expect = 3e-165
Identities = 514/606 (85%), Gaps = 31/606 (5%)
Strand=Plus/Plus
Query 1 ATGGCCGCGTTTCCGCAGTGGACAAGGGTCGATGACAAACG-TTTTGAGTTAGCTCTGCT 59
||||||||| |||||||||||| |||| ||||||| || | |||||||| ||||||| |
Sbjct 1 ATGGCCGCGGCTCCGCAGTGGACGAGGGCCGATGAC-AAGGATTTTGAGTCAGCTCTGGT 59
Query 60 TCA-AATCCCGGAGGGTTCGCCGAATTTTATAGAGAATATCGCCT-ATTA-TCTCCAGAA 116
| | | ||||||||||||||||| ||||| |||||||||||| || | | ||| ||||
Sbjct 60 T-ATATTCCCGGAGGGTTCGCCGTATTTTTTAGAGAATATCG-CTCA-AACTCTGAAGAA 116
Query 117 ACCGGTGAAGGAGGTGGAGT-ACTACTACTGCGCGTTGGTCCATGATATTGAGCGGATCG 175
| ||||| | ||||| || | || ||||| | |||||||||| ||| |||| | |||||
Sbjct 117 AACGGTGGACGAGGT-GAATAACCACTACAACACGTTGGTCCACGATGTTGATCTGATCG 175
Query 176 AATCGGGTAAGTATGTTTTGCCCAAATACCCGGAAGACGATTACGTGAAACTGACGGAAG 235
|||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 176 AATCGGGTAAGTTTGTTTTGCCCAAATACCCGGACGACGATTACGTGACACTGACGGAAG 235
Query 236 C-AG---GT---GAGTCTAAGGGCAATGGGAAAAAGACGGGAATTCCTTGGTCAGAAGAG 288
| || || || | ||||||| ||||||||||| |||||||| |||||| || |
Sbjct 236 CAAGTCCGTCCAGAAAC-AAGGGCACTGGGAAAAAGAATGGAATTCCATGGTCACAAAAT 294
Query 289 GAACAGAGGTTGTTTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATA 348
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GAACACAGGTTGTTTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATA 354
Query 349 TCGAGGTATTGTGTGAAGTCAAGGACCTCGACGCAAGTGGCAAGCCATGCTCAGAAGTAT 408
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 355 TCGAGGCATTGTGTGAAGTCAAGGACATCGACGCAAGTGGCAAGCCATGCTCAGAAGTAT 414
Query 409 TTTGCAA--GGC-AAAAGCAGGAGAGTACGAATACTAAACGCCCGAGTATTCATGACATG 465
|| ||| ||| |||| | || || |||| || |||||| ||||||| |||||||||
Sbjct 415 TT--CAATAGGCTAAAA-CGGGGGATTACGGATGGGAAACGCTCGAGTATCCATGACATG 471
Query 466 ACTCTGGGAGTTGCGGTCAATGTCCCTGGATCCAACTTGGA-GTCTACTGG-CCAGCAAC 523
|||||||||| || || |||||||| |||||||||||| | || || ||| |||||| |
Sbjct 472 ACTCTGGGAGATGTGGAAAATGTCCCAGGATCCAACTTG-ACGTGTA-TGGACCAGCAGC 529
Query 524 CACATTTTGGTGATCAAATTCCTTCGAATCAATATTATCC-CTCCCAGGAAAACTTTCGG 582
||||||||||||| |||||| ||| |||||||| ||| || ||||||||||||||||| |
Sbjct 530 CACATTTTGGTGACCAAATTTCTTGGAATCAATGTTA-CCTCTCCCAGGAAAACTTTCCG 588
Query 583 GGTTTT 588
| ||||
Sbjct 589 G-TTTT 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5