BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09460.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1 1171 0.0
Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1 449 1e-125
Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1 403 1e-111
> Ahg489795 jgi|Araly1|489795|fgenesh2_kg.6__2929__AT4G09460.1
Length=850
Score = 1171 bits (634), Expect = 0.0
Identities = 724/767 (94%), Gaps = 7/767 (1%)
Strand=Plus/Plus
Query 11 TTGAtctcttctctcttctctTACACCA---TCTTCTTCATTCACCATGGGAAGATCTCC 67
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTGATCTCTTCTCTCTTCTCTTACACCATCTTCTTCTTCATTCACCATGGGAAGATCTCC 60
Query 68 TTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAAGAAGATCAACGTCT 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAAGAAGATCAACGTCT 120
Query 128 CGTAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCTTCCTAAATCCGCTGG 187
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTTCCTAAATCCGCTGG 180
Query 188 ATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTACCTTCGTCCTGATCT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTACCTTCGTCCTGATCT 240
Query 248 TAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAAACTCCATAGCTTACT 307
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAACTCCATAGCTTACT 300
Query 308 CGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACAGATAACGAAATAAA 367
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 CGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACAGATAATGAAATCAA 360
Query 368 GAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCACGGTATTGATCCACAAAC 427
|||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 361 GAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGGGATTGATCCACAAAC 420
Query 428 TCATCGTCAGATTAACGAATCCAAAACGGTGTCGTCTCAAGTTGTTGTTCCTATTCAAAA 487
|||||||| ||||||||| |||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 421 TCATCGTCCGATTAACGATTCCAAAACGGTGCCGTCTCAGGTTGTTGTTCCTAGTCAAAA 480
Query 488 CGATGCCGTTGAGTATTCTTTTTCCAATTTAGCCGTTAAACCGAAGACGGAAAATTCCTC 547
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGACGCCGTTGAGTATTCTTTTTCCAATTTAGCCGTTAAACCGAAGACGGAAAATTCCTC 540
Query 548 CGATAACGGAGCTTCGACTAGCGGCACGACGACGGACGAGGATCTCCGGCAGAATGGGGA 607
||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 541 CGATAACGGAGCTTCGACTAGTAGTACGACGACGGATGAGGATCTCCGGCAGAATGGGGA 600
Query 608 GTGTTATTATAGTGATAATTCAGGACATATAAAGCTGAATTTGGATTTAACTCTTGGGTT 667
||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 601 GTGTTATAATAGTGATAATTCAGGAAAAATAGAGCTGAATTTGGATTTAACTCTCGGGTT 660
Query 668 TGGATCCTGGTCGGGTCGGATAGTCGGAGTCGGGTCATCGGCTGATTCTAAA-CCGTGGT 726
||||| | ||||||||||| | || |||| |||||||||||||||||| ||| ||||||
Sbjct 661 TGGATTCGGGTCGGGTCGGGTTGTTGGAGCCGGGTCATCGGCTGATTC-AAAGCCGTGGC 719
Query 727 GCGACCCGGTGATGGA-GGCGCGTTTGTCACTGTTGTAATAATTTGT 772
| || | ||||||| | |||||||||||||| |||||||||||||||
Sbjct 720 GGGATCAGGTGATG-ACGGCGCGTTTGTCACAGTTGTAATAATTTGT 765
> Ahg473681 jgi|Araly1|473681|fgenesh2_kg.1__3635__AT1G35515.1
Length=609
Score = 449 bits (243), Expect = 1e-125
Identities = 353/406 (87%), Gaps = 8/406 (2%)
Strand=Plus/Plus
Query 54 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 113
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAAAAAGCTCACACAAACAAAGGAGCATGGACTAAAGAA 60
Query 114 GAAGATCAACGTCTCG-TAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCT 172
|||||||||| ||| | | ||||| || |||| | | |||||||| | ||||||||||||
Sbjct 61 GAAGATCAACTTCT-GATTGATTACATACGTACTAATGGTGAAGGCTCTTGGCGTTCTCT 119
Query 173 TCCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTA 232
|||||||||||| || |||||||| ||||| |||||||||||||| || |||||||||||
Sbjct 120 TCCTAAATCCGCCGGGTTGTTGCGGTGTGGAAAAAGTTGTAGATTAAGGTGGATTAATTA 179
Query 233 CCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAA 292
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||
Sbjct 180 TCTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGATCAAATCATTGTTAA 239
Query 293 ACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGG-AAGATTACCAGGAAGAA 351
||| ||||| ||| |||| ||||||||||| ||||||||||| || |||||| ||||| |
Sbjct 240 ACTTCATAGTTTATTCGGCAACAAATGGTCTTTGATAGCTGGGAA-ATTACCGGGAAGGA 298
Query 352 CAGATAACGAAAT-AAAGAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCAC 410
||||||| || || ||| || ||||||||||||||||| ||| | ||||||||||| ||
Sbjct 299 CAGATAATGAGATTAAA-AACTATTGGAACACTCATATAAAGCGAAAGCTTCTTAGCCAT 357
Query 411 GGTATTGATCCACAAACTCATCGT-CAGATTAACGAATCCAAAACG 455
|| ||||| ||| ||||||| ||| | |||||||| ||||||||||
Sbjct 358 GGCATTGACCCAAAAACTCACCGTTC-GATTAACGTATCCAAAACG 402
> Ahg472503 jgi|Araly1|472503|fgenesh2_kg.1__2457__AT1G22640.1
Length=980
Score = 403 bits (218), Expect = 1e-111
Identities = 337/396 (85%), Gaps = 2/396 (1%)
Strand=Plus/Plus
Query 54 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 113
||||||||||| || || || || |||||||||| ||||||||||||||||||||||||
Sbjct 84 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 143
Query 114 GAAGATCAACGTCTCGTAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCTT 173
|||||||| | |||||| ||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 144 GAAGATCAGCTTCTCGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTC 203
Query 174 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 233
||| |||| ||||| | | |||||||| |||||||||||||||||||| |||||
Sbjct 204 CCTCGCGCCGCCGGATTACAGAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTAT 263
Query 234 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAAA 293
|| | || ||||| ||| | || ||||| ||||| || |||||| || ||||||||||
Sbjct 264 CTAAGACCAGATCTCAAAAGAGGCAATTTCACTGAAGAAGAAGATGAACTCATCATCAAG 323
Query 294 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACA 353
||||||||||| || |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 324 CTCCATAGCTTGCTTGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACA 383
Query 354 GATAACGAAATAAAGAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCACGGT 413
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 384 GATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTTAGCCGTGGG 443
Query 414 ATTGATCCACAA-ACTCATCGTCAGATTAACGAATC 448
||||||||| || |||||||||| ||| ||||||||
Sbjct 444 ATTGATCCA-AACACTCATCGTCTGATCAACGAATC 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5