BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09467.1 Length=538 Score E Sequences producing significant alignments: (Bits) Value Ahg489799 jgi|Araly1|489799|fgenesh2_kg.6__2933__AT4G09466.1 606 4e-173 > Ahg489799 jgi|Araly1|489799|fgenesh2_kg.6__2933__AT4G09466.1 Length=436 Score = 606 bits (328), Expect = 4e-173 Identities = 403/438 (92%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 5 ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA 60 |||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||| Sbjct 1 ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA 60 Query 61 ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT 119 |||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||| Sbjct 61 ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT 119 Query 120 CAACCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 178 |||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| | Sbjct 120 CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178 Query 179 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 238 ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238 Query 239 TCCGACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 298 ||||||| |||||||| |||||||||||||| | ||||| ||||||||| |||||||||| Sbjct 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298 Query 299 TGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358 Query 359 GCACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAAATTT- 417 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | Sbjct 359 GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATATG 418 Query 418 TATTTTGCTTCGATAATT 435 ||||| | |||||||||| Sbjct 419 TATTTGGTTTCGATAATT 436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19611972746 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5