BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09467.1

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489799 jgi|Araly1|489799|fgenesh2_kg.6__2933__AT4G09466.1         606    4e-173


> Ahg489799 jgi|Araly1|489799|fgenesh2_kg.6__2933__AT4G09466.1
Length=436

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 403/438 (92%), Gaps = 9/438 (2%)
 Strand=Plus/Plus

Query  5    ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA  60
            |||||||||||||||||| |||||||||||||| ||||||||    | ||| ||||||||
Sbjct  1    ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA  60

Query  61   ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT  119
            |||||||||||||||||||||||||| || ||| ||||||||  ||||||||||||||||
Sbjct  61   ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT  119

Query  120  CAACCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA  178
            |||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct  120  CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA  178

Query  179  ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA  238
            ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  179  ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA  238

Query  239  TCCGACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA  298
            ||||||| |||||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct  239  TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA  298

Query  299  TGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG  358
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  299  TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG  358

Query  359  GCACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAAATTT-  417
            |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | 
Sbjct  359  GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATATG  418

Query  418  TATTTTGCTTCGATAATT  435
            ||||| | ||||||||||
Sbjct  419  TATTTGGTTTCGATAATT  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19611972746


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5