BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09500.2
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489802 jgi|Araly1|489802|fgenesh2_kg.6__2936__AT2G22930.1 2026 0.0
Ahg352016 jgi|Araly1|352016|fgenesh1_pg.C_scaffold_6002609 584 6e-166
> Ahg489802 jgi|Araly1|489802|fgenesh2_kg.6__2936__AT2G22930.1
Length=1405
Score = 2026 bits (1097), Expect = 0.0
Identities = 1304/1406 (93%), Gaps = 6/1406 (0%)
Strand=Plus/Plus
Query 42 AAAAAAGCAGATACTTCTTTTTGTGTTCTTGAATTACTT-CTTTACTTTTGTGTTTTCAC 100
|||||| ||||| ||||||||| ||||||||| ||||| |||| ||||||||||| ||
Sbjct 3 AAAAAAAAAGATAATTCTTTTTGAGTTCTTGAAATACTTGTTTTA-TTTTGTGTTTTTAC 61
Query 101 AATTTGAGAAACGAAATGGAGCCAAAGTTTCATGCTTTTATGTTTCCATGGTTTGCTTTT 160
||||||||||| |||||| ||| |||||| |||||||||||||| || ||||||||||||
Sbjct 62 AATTTGAGAAAGGAAATGAAGCGAAAGTTCCATGCTTTTATGTTCCCCTGGTTTGCTTTT 121
Query 161 GGTCATATGATTCCATTTCTACATCTTGCAAACAAACTAGCTGAAAAAGGTCACCGAGTT 220
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 122 GGTCATATGATTCCTTTTCTACATCTTGCAAACAAACTAGCTGAGAAAGGTCATCGGGTT 181
Query 221 ACTTTCTTGCTACCTAAGAAAGCACAAAAACAGTTGGAACATCACAACTTGTTCCCAGAC 280
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 182 ACTTTCTTGCTACCTAAGAAAGCTCAAAAACAGTTGGAACATCACAACTTGTTTCCGGAC 241
Query 281 AGTATTGTCTTTCACCCTCTCACAGTTCCTCCTGTCAATGGCCTCCCTGCTGGTGCCGAG 340
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 242 AGTATTGTCTTTCACCCTCTCACAATACCTCCTGTCAATGGCCTCCCTGCTGGTGCGGAG 301
Query 341 ACAACCTCGGATATCCCCATCTCGTTGGACAACCTCTTGTCCAAAGCCTTGGATCTCACT 400
||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||||||||
Sbjct 302 ACAACCTCGGATATCCCAATCTCAATGGACAACTTCTTGTCCGAAGCATTGGATCTCACT 361
Query 401 CGCGATCAGGTTGAAGCTGCGGTTCGTGCTTTGAGACCTGACTTGATCTT-TTTCGATTT 459
| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 362 CACGATCAGGTTGAAGCTGCGGTTCGTGCTTTGAGACCGGACTTGATCTTCTTT-GATTT 420
Query 460 TGCTCAATGGATTCCAGATATGGCTAAAGAACATATGATCAAGAGTGTGAGTTACATCAT 519
|||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TGCTCAATGGGTTCCAGAAATGGCTAAAGAGCATATGATCAAGAGTGTGAGTTACATCAT 480
Query 520 TGTATCTGCGACAACAATAGCTCATACACATGTCCCTGGAGGTAAATTAGGTGTTCGC-C 578
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 481 AGTATCTGCTACAACTATAGCTCATACACATGTCCCTGGTGGTAAATTAGGTGTTC-CTC 539
Query 579 CACCGGGTTATCCGTCATCAAAGGTGATGTTCCGTGAAAACGATGTTCATGCCTTAGCAA 638
|| | ||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 540 CATCAAGTTATCCTTCATCGAAGGTGTTGTTCCGTGAAAACGATGCTCATGCCTTAGCAA 599
Query 639 CCTTATCGATATTTTACAAGAGACTGTATCATCAGATCACTACAGGTCTTAAGAGCTGTG 698
|||| ||||| |||||||||||||| ||||||||| |||||||| ||||||||| |||||
Sbjct 600 CCTTGTCGATCTTTTACAAGAGACTTTATCATCAGCTCACTACAAGTCTTAAGAACTGTG 659
Query 699 ATGTCATTGCATTGAGGACTTGCAAAGAAGTCGAAGGTATGTTCTGCGACTTTATATCGC 758
||||||||||| ||||||| ||||||||| | ||||||| ||||||||||| ||||||||
Sbjct 660 ATGTCATTGCAATGAGGACCTGCAAAGAAATAGAAGGTAAGTTCTGCGACTATATATCGC 719
Query 759 GTCAATACCATAAGAAGGTTCTCTTGACTGGTCCAATGTTCCCTGAGCCAGACACAAGTA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GTCAATACCATAAGAAGGTTCTCTTGACTGGTCCAATGTTCCCTGAGCCAGACACAACTA 779
Query 819 AACCACTAGAAGAACGCTGGAATCATTTTCTAAGCGGGTTCGCGCCGAAGTCAGTAGTGT 878
||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 780 AACCACTAGAAGAACACTGGAGTCATTTTCTAAGCGGATTCACGCCGAAGTCAGTAGTGT 839
Query 879 TTTGTTCACCTGGCAGCCAAGTAATTCTTGAGAAAGATCAATTCCAAGAACTCTGTTTAG 938
|||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 840 TTTGTTCATTTGGCAGCCAAATCATTCTTGAAAAAGATCAATTCCAAGAACTCTGTTTAG 899
Query 939 GGATGGAGCTAACAGGTTTACCATTTCTTTTAGCGGTAAAGCCACCAAGAGGATCATCAA 998
|||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||||
Sbjct 900 GGATGGAGCTGACAGGTTTACCGTTTCTTGTAGCGGTTAAGCCACCAAGAGGATCATCAA 959
Query 999 CGGTCCAAGAAGGGTTACCAGAAGGGTTCGAGGAGCGGGTGAAAGATCGTGGTGTTGTTT 1058
|||||||||||||||||||| |||||||||||||||| || |||| ||||||||| ||||
Sbjct 960 CGGTCCAAGAAGGGTTACCACAAGGGTTCGAGGAGCGAGTAAAAGGTCGTGGTGTGGTTT 1019
Query 1059 GGGGAGGATGGGTGCAACAACCTTTGATATTGGCTCATCCATCAATAGGTTGCTTTGTGA 1118
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGGGAGGGTGGGTACAACAACCATTGATATTGGCTCATCCATCAATAGGTTGCTTTGTGA 1079
Query 1119 ACCATTGTGGTCCCGGAACAATATGGGAGTCTTTGGTGAGTGATTGCCAAATGGTTTTGA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACCATTGTGGTCCCGGAACAATATGGGAGTCTTTGGTGAGTGATTGCCAAATGGTTTTGA 1139
Query 1179 TTCCATTTTTAAGTGATCAAGTTCTCTTCACAAGATTGATGACCGAGGAATTCGAGGTCT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCATTTTTAAGTGATCAAGTTCTCTTCACAAGATTGATGACCGAGGAATTCGAGGTCT 1199
Query 1239 CTGTAGAAGTGCCGAGGGAAAAAACAGGATGGTTTTCAAAGGAGAGCTTGAGCAATGCTA 1298
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1200 CTGTAGAAGTGTATAGGGAAAAAACAGGATGGTTTTCAAAGGAGAGCTTGAGCAATGCGA 1259
Query 1299 TCAAATCTGTGATGGATAAAGACAGTGACATTGGGAAGTTAGTGAGGAGTAACCACACCA 1358
|||| ||||||||||||||||| |||||| | |||||| |||||||||||||||||||||
Sbjct 1260 TCAAGTCTGTGATGGATAAAGAAAGTGACCTCGGGAAGCTAGTGAGGAGTAACCACACCA 1319
Query 1359 AATTGAAGGAGATTTTAGTTAGTCCTGGATTATTGACTGGTTACGTTGATCACTTTGTAG 1418
|||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 1320 AATTGAAGGAGATTTTGGTTAGTCCTGGATTATTGACCAGTTACGTGGATAACTTTGTAG 1379
Query 1419 AGGGATTGCAAGAGAATTTGATTTGA 1444
||| |||||||||| ||||||| |||
Sbjct 1380 AGGAATTGCAAGAGGATTTGATCTGA 1405
> Ahg352016 jgi|Araly1|352016|fgenesh1_pg.C_scaffold_6002609
Length=504
Score = 584 bits (316), Expect = 6e-166
Identities = 391/428 (91%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 1018 AGAAGGGTTCGAGGAGCGGGTGAAAGATCGTGGTGTTGTTTGGGGAGGATGGGTGCAACA 1077
|||||||||||||||||||||||||| |||||||| || |||||||||||||| || ||
Sbjct 78 AGAAGGGTTCGAGGAGCGGGTGAAAGGCCGTGGTGTGGTATGGGGAGGATGGGTACATCA 137
Query 1078 ACCTTTGATATTGGCTCATCCATCAATAGGTTGCTTTGTGAACCATTGTGGTCCCGGAAC 1137
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 138 ACCTTTGATATTGGCTCATCCATCAATAGGCTGCTTTGTGAACCATTGTGGTCCCGGAAA 197
Query 1138 AATATGGGAGTCTTTGGTGAGTGATTGCCAAATGGTTTTGATTCCATTTTTAAGTGATCA 1197
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AATATGGGAGGCTTTGGTGAGTGATTGCCAAATGGTTTTGATTCCATTTTTAAGTGATCA 257
Query 1198 AGTTCTCTTCACAAGATTGATGACCGAGGAATTCGAGGTCTCTGTAGAAGTGCCGAGGGA 1257
| | |||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 258 ACTACTCTCCACAAAATTGATGACCGAGGAATCCGAGGTCTCTGTAGAAGTGTATAGGGA 317
Query 1258 AAAAACAGGATGGTTTTCAAAGGAGAGCTTGAGCA-ATGCTATCAAATCTGTGATGGATA 1316
||||||||||||||||||||||||||||||||| | |||| ||||| ||||||||| |||
Sbjct 318 AAAAACAGGATGGTTTTCAAAGGAGAGCTTGAG-ATATGCGATCAAGTCTGTGATGTATA 376
Query 1317 AAGACAGTGACATTGGGAAGTTAGTGAGGAGTAACCACACCAAATTGAAGGAGATTTTAG 1376
|||| |||| | | |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 377 AAGAGAGTGGCCTCGGGAAGCTAGTGAGGAGTAACCACACCAAGTTGAAGGAGATTTTGG 436
Query 1377 TTAGTCCTGGATTATTGACTGGTTACGTTGATCACTTTGTAGAGGGATTGCAAGAGAATT 1436
||||||||||||||||||| ||||||| ||| ||||||| |||| |||||||||| |||
Sbjct 437 TTAGTCCTGGATTATTGACCAGTTACGTGGATAACTTTGTTGAGGCATTGCAAGAGGATT 496
Query 1437 TGATTTGA 1444
|||| |||
Sbjct 497 TGATCTGA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5