BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09510.1
Length=2032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489803 jgi|Araly1|489803|fgenesh2_kg.6__2937__AT4G09510.1 3038 0.0
Ahg922723 jgi|Araly1|922723|scaffold_104004.1 1315 0.0
Ahg316170 jgi|Araly1|316170|fgenesh1_pm.C_scaffold_2001203 721 0.0
> Ahg489803 jgi|Araly1|489803|fgenesh2_kg.6__2937__AT4G09510.1
Length=2039
Score = 3038 bits (1645), Expect = 0.0
Identities = 1919/2049 (94%), Gaps = 27/2049 (1%)
Strand=Plus/Plus
Query 1 GTTTTGTATTCTTCTTCCTTACTTCTT-ATTCTATCTATAAAACAACAACTTCACTCATC 59
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1 GTTTTGTATTCTTCTTCCTTACTTGTTCA-TCTATCTATAAAACAACAACTTCACTCATC 59
Query 60 ATGACTCTTTTTCCCCATTTTCTTACTCTCTTGCCCTTTCTTCTCTCACTCTCCGGCG-A 118
|||||||||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |
Sbjct 60 ATGACTCTTTTTTCCCGTTTTCTTACTCTTTTGCCCCTTCTTCTCTCACTCTCCGGCGAA 119
Query 119 CT-G-TTACGAGTTTTTAACACTTCCGTCGTCTTCTCAGTTGTTGTTGTTG-TT-T-A-T 172
| | ||||||||| ||||||||||||||||||||||||||||||||| || | | |
Sbjct 120 ATCGCCGGCGAGTTTTTGACACTTCCGTCGTCTTCTCAGTTGTTGTTGTTGTTTATGACT 179
Query 173 G-A-C-A-AGATCTTGTTCTATCCATTAAAACCAAAGAAATGGAGGAAGGTCATAAAGAA 228
| | | | |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 180 GAACCTATAGATCTTGTTCTATCCATTAAAACCAAATAAAT---GGAAGGTCATAAAGAA 236
Query 229 CCATTGGT-GCTAAGAGTTGAAGGATCACATTGTTCTTTATCAGAGATGGATGATTTTGA 287
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 237 CCATT-GTGGCTAAGAGTTGAAGGATCACATTGTTCATTATCAGAGATGGATGATTTTGA 295
Query 288 TCTAACTCGGGCTTTAGAGAAGCCGAGGCAGCTAAAGATCGAACGGAAGAGATCGTTTGA 347
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 296 TCTAACTCGGGCTTTGGAGAAGCCGAGGCAGCTAAAGATTGAACGGAAGAGATCATTTGA 355
Query 348 CGAAAGGTCGATGAGCGAGTTATCGACTGGCTATGTAAGACAAGATAGCATTTTAGAAAT 407
||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 356 TGAAAGATCAATGAGCGAGTTATCGACTGGCTATGCAAGACAAGACAGCATTTTAGAAAT 415
Query 408 GGCTCATTCTCCTGGAAGTAGGTCAATGGTGGACACTCCTCTCTCTGTTAGGAACTCTTT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 GGCTCATTCTCCTGGAAGTAGGTCAATGGTGGACACTCCTCTCTCTGTTAGGAACTCGTT 475
Query 468 CGAGCCTCATCCGATGGTTGCTGAGGCTTGGGAAGCTTTGAGAAGGTCAATGGTGTTCTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGAGCCTCATCCGATGGTTGCTGAGGCTTGGGAAGCTTTGAGAAGGTCAATGGTGTTCTT 535
Query 528 TCGTGGTCAACCCGTTGGTACCATTGCAGCTTATGACCATGCCTCCGAGGAGGTCTTGAA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCGTGGTCAACCCGTTGGTACCATTGCAGCTTATGACCATGCCTCCGAGGAGGTCTTGAA 595
Query 588 CTATGATCAGGTGTTTGTACGTGACTTTGTACCAAGTGCATTGGCGTTTCTGATGAATGG 647
||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 596 CTATGATCAGGTGTTCGTACGAGACTTTGTACCGAGTGCATTGGCATTTCTGATGAATGG 655
Query 648 AGAGCCCGATATAGTGAAAAACTTCTTGCTCAAGACACTTCAGCTTCAAGGTTGGGAGAA 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGAGCCAGATATAGTGAAAAACTTCTTGCTCAAGACACTTCAGCTTCAAGGTTGGGAGAA 715
Query 708 ACGGGTTGACCGGTTCAAGCTTGGGGAAGGCGTTATGCCAGCGAGTTTCAAGGTGCTTCA 767
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 716 ACGGGTTGACCGGTTCAAGCTCGGGGAAGGTGTTATGCCAGCGAGTTTCAAGGTGCTTCA 775
Query 768 TGATCCAGTTCGTAAAACCGACACAATTATTGCGGATTTTGGAGAAAGCGCTATAGGAAG 827
||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 776 TGATCCAGTCCGTAAAACCGACACAATCGTTGCGGATTTCGGGGAAAGCGCTATAGGAAG 835
Query 828 AGTAGCACCGGTGGATTCAGGATTCTGGTGGATCATACTTCTCCGTGCTTACACGAAATC 887
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 836 AGTAGCACCGGTGGATTCAGGATTCTGGTGGATCATACTTCTCCGCGCTTACACAAAATC 895
Query 888 TACGGGAGATTTGACTTTATCTGAGACACCAGAGTGTCAGAGGGGAATGAGGCTTATACT 947
||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 TACCGGAGATTTGACTCTGTCTGAGACACCAGAGTGTCAGAGGGGAATGCGGCTTATACT 955
Query 948 CTCTCTTTGCTTATCCGAAGGTTTTGATACTTTCCCTACGCTTCTTTGTGCTGACGGTTG 1007
||| || |||||||||||||| ||||| ||||||||||| || |||||||||||||||||
Sbjct 956 CTCACTCTGCTTATCCGAAGGGTTTGACACTTTCCCTACACTGCTTTGTGCTGACGGTTG 1015
Query 1008 TTCTATGGTTGATAGGAGAATGGGTGTTTATGGATATCCAATAGAGATTCAAGCTCTGTT 1067
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1016 TTCTATGGTTGATAGAAGAATGGGTGTTTATGGATATCCGATAGAGATTCAAGCTCTGTT 1075
Query 1068 TTTCATGGCATTGAGATGCGCCTTGTCGATGCTTAAACCAGACGAGGAAGGTCGAGATTT 1127
||||||||| ||||||||||||| |||||||||||||| |||||||||||| |||| ||
Sbjct 1076 TTTCATGGCGCTGAGATGCGCCTTATCGATGCTTAAACCTGACGAGGAAGGTAGAGAGTT 1135
Query 1128 CATAGAAAGGATTGTGAAGAGACTTCACGCGCTGAGTTTCCATATGCGCAGTTACTTTTG 1187
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CATAGAAAGAATTGTGAAGCGACTTCACGCGCTGAGTTTCCATATGCGCAGTTACTTTTG 1195
Query 1188 GCTTGACTTTCAACAACTCAACGATATCTATAGGTACAAGACAGAGGAGTACTCACACAC 1247
||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1196 GCTCGACTTTCAGCAACTCAATGATATCTACAGGTACAAGACGGAGGAGTACTCACACAC 1255
Query 1248 CGCGGTGAACAAGTTCAACGTGATGCCGGACTCGATACCAGACTGGGTTTTCGACTTTAT 1307
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1256 GGCGGTGAACAAATTCAACGTGATGCCGGACTCGATACCAGATTGGGTTTTTGACTTCAT 1315
Query 1308 GCCTCTCCGTGGAGGATATTTTGTCGGCAATGTAAGCCCGGCCCGTATGGATTTCAGGTG 1367
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1316 GCCTCTTCGTGGAGGATATTTTGTCGGCAATGTAAGCCCGGCCCGTATGGATTTTAGGTG 1375
Query 1368 GTTTTCCTTAGGAAATTGTGTCTCCATCCTTTCTTC-CTTGGCAACTCCGGATCAGTCAA 1426
||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||||||
Sbjct 1376 GTTTTCCTTAGGAAACTGTGTCTCTATCCTTTCTTCTCTAG-CAACTCCGGATCAGTCAA 1434
Query 1427 TGGCTATTATGGACCTCCTCGAGCACCGTTGGGAGGAGCTAGTAGGCGAGATGCCGCTCA 1486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 TGGCTATTATGGACCTCCTCGAGCACCGTTGGGAGGAGCTAGTAGGCGAGATGCCGCTTA 1494
Query 1487 AGATATGTTACCCTTGCATCGAAAGCCACGAGTGGCGGATTGTTACCGGTTGTGATCCTA 1546
||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||
Sbjct 1495 AGATATGCTACCCTTGCATTGAGAGCCACGAGTGGCGGATTGTCACTGGTTGTGATCCTA 1554
Query 1547 AAAACACGAGGTGGAGTTACCACAACGGTGGATCTTGGCCAGTATTGCTGTGGACGCTGA 1606
| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1555 AGAACACTAGGTGGAGCTACCACAACGGCGGATCTTGGCCAGTATTATTGTGGACGCTGA 1614
Query 1607 CGGCGGCATGCATCAAGACTGGACGGCCTCAAATAGCGAGACGTGCGATTGATCTAATTG 1666
| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1615 CAGCGGCATGCATCAAGACAGGCCGGCCTCAAATCGCGAGACGTGCGATTGATCTAATTG 1674
Query 1667 AATCACGGCTACACCGAGATTGCTGGCCGGAATACTATGATGGTAAGCAAGGAAGGTACG 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AATCACGGCTACACCGAGATTGCTGGCCGGAATACTATGATGGTAAGCAAGGAAGGTACG 1734
Query 1727 TTGGAAAACAAGCAAGGAAGTACCAGACTTGGTCAATCGCGGGTTACTTGGTTGCGAAAA 1786
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1735 TTGGAAAACAGGCTAGGAAATACCAGACTTGGTCAATCGCGGGTTACTTGGTTGCGAAGA 1794
Query 1787 TGATGCTTGAAGATCCTTCACATATTGGAATGATCTCTCTTGAAGAAGACAAACAGATGA 1846
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1795 TGATGCTTGAAGATCCTTCACATATCGGAATGATCTCTCTTGAAGAAGATAAACAGATGA 1854
Query 1847 AACCTGTTATCAAGAGATCTGCTTCATGGACTTGCTGAATTTTGTTTCTTGTTTTGTATT 1906
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1855 AACCTGTTATCAAGAGATCTGCTTCTTGGACTTGCTGATTTTTGTTTCTTGTTTTGTATT 1914
Query 1907 ATAA-TGTCATTTGATTAAGCA-TT-CAAAAGACCTTTAATCAGCGAGAGAGTAGTTCTG 1963
|||| | ||||| |||||| | || ||||||||||||||||||| ||||| ||||||||
Sbjct 1915 ATAAATTTCATT--ATTAAG-AGTTGCAAAAGACCTTTAATCAGCCAGAGAATAGTTCTG 1971
Query 1964 TTTGTATTTCTCTTTGATCCAACTATGGTTTATTTTCACTTGAGGCATAATATAATCTCT 2023
|| | | |||||||||||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1972 TT-GCACTTCTCTTTGATCCAACTATGATTTATTTTAACTTGAGGCTTAATATAATCTCT 2030
Query 2024 TCCTAGATC 2032
| |||||||
Sbjct 2031 TTCTAGATC 2039
> Ahg922723 jgi|Araly1|922723|scaffold_104004.1
Length=1698
Score = 1315 bits (712), Expect = 0.0
Identities = 1359/1666 (82%), Gaps = 65/1666 (4%)
Strand=Plus/Plus
Query 238 CTAAGAGTTGAAGGATCACATTGTTCTTTATCAGAGATGGATGATTTTGATCTAACTCGG 297
||||||| || |||||||| ||||||||||| |||||||||||| ||||| | |||||
Sbjct 36 CTAAGAGCTGTGGGATCACACTGTTCTTTATCTGAGATGGATGATCTTGATTTGACTCGA 95
Query 298 GCTTTAGAGAAGCCGAGGCAGCTAAAGATCGAACGGAAGAGATCGTTTGACGAAAGGTCG 357
||||| || || || | | | | ||||| ||| |||||||||||||||| || ||||||
Sbjct 96 GCTTTGGATAAACC-AAG-A-TTGAAGATTGAAAGGAAGAGATCGTTTGATGAGAGGTCG 152
Query 358 ATGAGCGAGTTATCGACTGGCTAT-GTAAGACAAGATAGCATTTTAGAAATGGCTCATTC 416
||||| || ||||||||||| ||| || ||||| || | | ||| | | ||||
Sbjct 153 ATGAGTGAATTATCGACTGGTTATAGT-AGACATGACGGTA-TTT----A---C-GATTC 202
Query 417 TCCTGGAAGTAGGTCAATGGTGGACACTCCTC--TC-TCTGTTAGGAACT-CTTTCGAGC 472
|| || |||| || || | || || |||| || |||| ||| |||| |||| ||||
Sbjct 203 GCCAAGAGGTAGATCGGTGCTTGATACGCCTCTTTCTTCTGCTAGAAACTCCTTT-GAGC 261
Query 473 CTCATCCGATGGTTGCTGAGGCTTGGGAAGCTTTGAGAAGGTCAATGGTGTTCTTTCGTG 532
||||||| ||| | |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 262 CTCATCCTATGATGGCTGAGGCTTGGGAGGCTTTAAGAAGGTCAATGGTTTTCTTTCGTG 321
Query 533 GTCAACCCGTTGGTAC-CATTGCAGC-TTATGACCATGCCT-CCGAGGAGGTCTTGAACT 589
|||||||||||||||| | |||| || | ||| || || | || |||||||||||||
Sbjct 322 GTCAACCCGTTGGTACTC-TTGCCGCGGT-TGATAAT-ACTACTGATGAGGTCTTGAACT 378
Query 590 ATGATCAGGTGTTTGT-ACGTGACTTTGTACCAAGTGCATTGGCGTTTCTGATGAATGGA 648
|||||||||||||||| | | || |||||||| ||||| |||||||| |||||||||||
Sbjct 379 ATGATCAGGTGTTTGTGA-GGGATTTTGTACCGAGTGCGCTGGCGTTTTTGATGAATGGA 437
Query 649 GAGCCCGATATAGTGAAAAACTTCTTGCTCAAGACACTTCAGCTTCAAGGTTGGGAGAAA 708
|| || |||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 438 GAACCGGATATAGTGAAACACTTCTTGCTTAAGACACTTCAGCTTCAAGGTTGGGAGAAA 497
Query 709 CGGGTTGACCGGTTCAAGCTTGGG-GAAGGCGTTATGCCAGCGAGTTTCAAGGTGCTTCA 767
|| || |||||||||||| || || ||||| || ||||| || |||||||||||||||||
Sbjct 498 CGTGTGGACCGGTTCAAG-TTAGGAGAAGGTGTGATGCCTGCAAGTTTCAAGGTGCTTCA 556
Query 768 TGATCC-AGTTCGTAAAACCGACACA-ATTATTGCGGATTTTGGAGAAAGCGCTATAGGA 825
|||||| | ||||| |||| || | | ||| |||||||||| || ||||| || || |||
Sbjct 557 TGATCCTA-TTCGTGAAACGGATA-ATATTGTTGCGGATTTCGGTGAAAGTGCCATTGGA 614
Query 826 AGAGTAGCACCGGTGGATTCAGGATTCTGGTGGATCATACTTCTCCGTGCTTACACGAAA 885
| || || || || |||||||| ||||||||||| || ||||| |||||||| || |||
Sbjct 615 CGTGTGGCTCCTGTAGATTCAGGGTTCTGGTGGATTATCCTTCTTCGTGCTTATACCAAA 674
Query 886 TCTACGGGAGATTTGACTTTATCTGAGACACCAGAGTGTCAGAGGGGAATGAGGCTTATA 945
||||| |||||||||||| | || ||||| ||||||||||| | |||||||| || ||
Sbjct 675 TCTACTGGAGATTTGACTCTCTCGGAGACGCCAGAGTGTCAAAAGGGAATGAAACTGATC 734
Query 946 CTCTCTCTT-TGCTTATCCGAAGGTTTTGATAC-TTTCCCTACGCTTCTTTGTGCTGACG 1003
|| ||| || |||||| | ||||| ||||| || ||||| |||||| ||||||||||| |
Sbjct 735 CTTTCT-TTGTGCTTAGCTGAAGGGTTTGACACGTTTCC-TACGCTGCTTTGTGCTGATG 792
Query 1004 GTTGTTCTATGGTTGATAGGAGAATGGGTGTTTATGGATATCCAATAGAGATTCAAGC-T 1062
| ||||| ||| ||||| | ||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 793 GATGTTCCATGATTGATCGAAGAATGGGTGTTTATGGGTATCCAATTGAGATCCAAGCGT 852
Query 1063 CTGTTTTTCATGGCAT-TGAGATGC-GCCTTGTCGATGCTTAAA-CCAGACG-AGGAAGG 1118
|||| |||||||| | |||||| | |||||||||||| ||||| || || | || | ||
Sbjct 853 -TGTTCTTCATGGC-TCTGAGAT-CTGCCTTGTCGATG-TTAAAGCCCGATGGAG-ATGG 907
Query 1119 TC-GAGATTTCATAGA-AAGGATTGTGAAGAGACTTCACGCGCT-GAGTTTCCATATGCG 1175
| |||| | ||| || ||| || || ||| | |||||||| || ||| |||||||||||
Sbjct 908 -CAGAGAGTGCATTGAGAAG-ATCGTTAAGCGGCTTCACGC-CTTGAGCTTCCATATGCG 964
Query 1176 CAGTTACTTTTGGCTTGACTTTCAACAAC-TCAACGATATCTATAGGTACAAGACAGAGG 1234
|| |||||| ||||| || | | | ||| |||| || || || |||| |||||| ||||
Sbjct 965 CAATTACTTCTGGCTCGA-TCACCAGAACCTCAATGACATTTACAGGTTCAAGACCGAGG 1023
Query 1235 AGTACTCACACACCGCGGTGAACAAGTTCAACGTGATGCCGGACTCGATACCAGACTGGG 1294
| || || ||||| || |||||||||||||| |||||||| || || ||||| || ||||
Sbjct 1024 AATATTCGCACACGGCAGTGAACAAGTTCAATGTGATGCCTGATTCTATACCGGAGTGGG 1083
Query 1295 TTTTCGACTTTATGCCTCTCCGTGGAGGATATTTTGTCGGCAATGTAAGCCCGGCCCGTA 1354
|||||||||| ||||||||||||||||| || ||||| || || ||| | || |||| ||
Sbjct 1084 TTTTCGACTTCATGCCTCTCCGTGGAGGCTACTTTGTGGGAAACGTAGGACCTGCCCATA 1143
Query 1355 TGGATTTCAGGTGGTTTTC-CTTAGGAAATTGTGTCTCCATCCTTTCTTCCTTGGCAACT 1413
|||||||| |||||||| | ||| || |||||||||||||| || ||||| ||||| |||
Sbjct 1144 TGGATTTCCGGTGGTTTGCGCTT-GGCAATTGTGTCTCCATACTCTCTTCATTGGCCACT 1202
Query 1414 CCGGATCAGTCAATGGCTATTATGGACCTCCTCGAGCACCGTTGGGAGGAGCTAGTAGGC 1473
|| ||||| || ||||| |||||||||||||| |||||||| |||| |||||| |||||
Sbjct 1203 CCAGATCAATCCATGGCCATTATGGACCTCCTTGAGCACCGGTGGGCGGAGCTTGTAGGT 1262
Query 1474 GAGATGCCGCTCAAGATATGTTACCCTTGCATCGAAAGCCACGAGTGGCGGATTGTTACC 1533
|||||||| |||||||| ||||| || ||| |||| ||||||||||||| || || ||
Sbjct 1263 GAGATGCCCCTCAAGATTTGTTATCCATGCCTCGAGGGCCACGAGTGGCGCATCGTCACT 1322
Query 1534 GGTTGTGATCCTAAAAACACGA-GGTGGAGTTACCACAACGGTGGATCTTGGCCAGTATT 1592
|| ||||| || || ||||| | ||||||| |||||||||||||||||||||||||| ||
Sbjct 1323 GGCTGTGACCCCAAGAACAC-ACGGTGGAGCTACCACAACGGTGGATCTTGGCCAGTTTT 1381
Query 1593 GCTGTGG-ACGCTGACGGCGGCATGCATCAAGACTGG-ACGGCCTCAAATAGCGAGACGT 1650
||| ||| | ||| || || || ||| | ||||| || | | || || || || |||||
Sbjct 1382 GCTATGGCA-GCTAACAGCAGCGTGCGTTAAGACAGGGA-GACCGCAGATCGCAAGACGC 1439
Query 1651 GC-GATTGATCTAATTGAATCACGGCTACACCGAGATTGCTGGCCGGAATACTATGATGG 1709
|| | |||| || || ||||| || || ||| | || || ||||| || || || |||||
Sbjct 1440 GCAG-TTGACCTCATAGAATCGCGTCTTCACAGGGACTGTTGGCCAGAGTATTACGATGG 1498
Query 1710 TAAGCAAGGAAGGTACGTTGGAAAACAAGCAAGGAAGTACCAGACTTGGTCAATCGCGGG 1769
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1499 TAAGCTAGGAAGGTACGTTGGAAAACAGGCAAGGAAATACCAGACTTGGTCAATCGCAGG 1558
Query 1770 TTACTTGGTTGCGAAAATGATGCTTGAAGATCCTTCACATATTGGAATGATCTCTCTTGA 1829
|||||| || || |||||| |||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1559 TTACTTAGTGGCAAAAATGTTGCTAGAAGATCCTTCACACATTGGTATGATCTCTCTTGA 1618
Query 1830 AGAAGACAAACAGATGAAACCTGTTATCAAGAGATCTGCTTCATGG 1875
||||||||||| |||||||| || |||||| ||||||| || |||
Sbjct 1619 AGAAGACAAACTCATGAAACCAGTCATCAAGCGATCTGCATCTTGG 1664
> Ahg316170 jgi|Araly1|316170|fgenesh1_pm.C_scaffold_2001203
Length=1500
Score = 721 bits (390), Expect = 0.0
Identities = 1049/1367 (77%), Gaps = 46/1367 (3%)
Strand=Plus/Plus
Query 536 AACCCGTTGGTACCATTGCAGCTTATGACCATGCCTCCGAGGAGGTCTTGAACTATGATC 595
|||| || || || || || || || |||||||| |||||||||||||||||||||||||
Sbjct 155 AACCGGTAGGAACAATCGCCGCCTACGACCATGCTTCCGAGGAGGTCTTGAACTATGATC 214
Query 596 AGGTGTTTGTACGTGACTTTGTACCAAGTGCAT-TGGCGTTTCTGATGAATGGAGAGCCC 654
|||| || |||||||| |||||||| || || | | |||||||||||||| ||||||||
Sbjct 215 AGGTATTCGTACGTGATTTTGTACCGAGCGC-TCTAGCGTTTCTGATGAAAGGAGAGCCT 273
Query 655 GATATAGTGAAAAACTT-CTTGCTCAAGACACTTCAGCTTCAAGGTTGGGAGAAACGGGT 713
|| || ||||| ||||| || || ||||||||||| |||| || || ||| | |
Sbjct 274 GACATTGTGAAGAACTTTCTC-CTAAAGACACTTCATATTCAGGGACAAGACAAAATGAT 332
Query 714 TGACCGGTTCAAGCTTGGGGAAGGCGTTATGCCAGCGAGTTTCAAGGTGCTTCATGATCC 773
||| |||||||||||| || |||| ||||||||||| ||||| || || ||| | ||
Sbjct 333 CGACAAGTTCAAGCTTGGTGATGGCGCAATGCCAGCGAGCTTCAAAGTTCTCCATAACCC 392
Query 774 -AGTTCGTA-AA-ACCGACACAATTATTGCGGATTTTGGAGAAAGCGCTATAGGAAGAGT 830
| | | | || || || || || || || || |||||||| ||||||||||| || ||
Sbjct 393 TA-T-CA-AGAAGACGGATACGATCATCGCTGACTTTGGAGAGAGCGCTATAGGGAGGGT 449
Query 831 AGCACCGGTGGATTCAGGATTCTGGTGGATCATACTTCTCCGTGCTTACACGAAATCTAC 890
|| || || || || || || ||||||||||| || ||||| |||||||| || |||||
Sbjct 450 GGCTCCCGTCGACTCGGGGTTTTGGTGGATCATTCTCCTCCGAGCTTACACTAAGTCTAC 509
Query 891 GGGAGAT--TTGACTTTATCTGAGACACCAGAGTGTCAGAGGGGAATGAGGCTTATACTC 948
||||| || || ||||||||| ||| ||||| || | |||||||||||| || |||
Sbjct 510 AGGAGACCATT--CTCTATCTGAGAGACCTGAGTGCCAAAAGGGAATGAGGCTCATTCTC 567
Query 949 TCTCTT-TG-CTTATCCGAAGGTTTTGATACTTTCCCTACGCTT-CTTTGTGCTGACGGT 1005
||| || || || || || || ||||||||||| || || || || || || ||||||
Sbjct 568 TCT-TTATGTCTC-TCTGAGGGGTTTGATACTTTTCCGACA-TTGCTCTGCGCAGACGGT 624
Query 1006 TGTTCTATGGTTGATAGGAGAATGGGTGTTTATGGATATCCAATAGAGATTCAAGCTCTG 1065
|| || ||||| ||| | || ||||| |||| || ||||| || ||||||||||| ||
Sbjct 625 TGCTCCATGGTCGATCGTAGGATGGGCATTTACGGCTATCCGATCGAGATTCAAGCCCTC 684
Query 1066 TTTTTCATGGCA-TTGAGATGCGC-CTTGTCGATGCTTAAACCA-GACGAGGAAGGTCGA 1122
||||||||||| || ||| ||| || |||||||| |||| | || || ||| |
Sbjct 685 TTTTTCATGGCTCTTC-GATTCGCACTC-TCGATGCTGAAAC-ATGATTCTGAGGGTAAA 741
Query 1123 GA-TTTCATAGAAAGGATTGTGAAGAGACTTCACGCGCTGAGTTTCCATATGCGCAGTTA 1181
|| ||| || |||| ||| |||| | | |||||||||||||| ||||| ||| | || ||
Sbjct 742 GAGTTT-ATGGAAAAGATAGTGACGCGGCTTCACGCGCTGAGCTTCCACATGAGAAGCTA 800
Query 1182 CTTTTGGCTTGACTTTCAA-CAACTCAACGATATCTATAGGTACAAGACAGAGGAGTACT 1240
||||||||| || |||| | || ||||| || || || | || ||||| ||||| ||||
Sbjct 801 CTTTTGGCTCGA-TTTCCAGCAGCTCAATGACATTTACCGTTATAAGACGGAGGAATACT 859
Query 1241 CACACACCGCGGTGAACAAGTTCAACGTGATGCCGGACTCGATACCAGACTGGGTTTTCG 1300
||||||||||||| |||||||||||||| || || ||||| || || || ||| | ||||
Sbjct 860 CACACACCGCGGTAAACAAGTTCAACGTCATCCCTGACTCCATTCCGGATTGGATCTTCG 919
Query 1301 ACTTTATGCCTCTCCGTGGAGGATATTTTGTCGGCAATGTAAG-CCCGGCCCGTATGGAT 1359
|||| ||||||||| | || || || || | || || || || |||| |||| |||||
Sbjct 920 ACTTCATGCCTCTCAGAGGTGGCTACTTCATTGGAAACGTCAGTCCCG-CCCGCATGGAC 978
Query 1360 TTCAGGTGGTTTTCCTTAGGAAATTGTGTCTCCATCCTTTCTTCCTTGGCAACTCCGGAT 1419
|||||||||||| | || ||||||||| || | || |||| || ||||| || || ||
Sbjct 979 TTCAGGTGGTTTGCGTTGGGAAATTGTATCGCAATTATTTCCTCATTGGCCACGCCAGAG 1038
Query 1420 CAGTCAATGGCTATTATGGACCTCCTCGAG-CACCGTTGGGAGGAGCTAGTAGGCGAGAT 1478
||||| ||||| || |||||||| | ||| | ||| |||||||| || || || |||||
Sbjct 1039 CAGTCCATGGCCATCATGGACCTGATTGAGGC-CCGGTGGGAGGAACTGGTTGGAGAGAT 1097
Query 1479 GCCGCTCAAGATATGTTACCCTTGC-ATCGAAAGCCACGAGTGGCGGATTGTTACCGGTT 1537
|||| | ||||||||||| || || || || || ||||||||||| || || || || |
Sbjct 1098 GCCGTTGAAGATATGTTATCCG-GCGATGGAGAGTCACGAGTGGCGTATCGTCACTGGCT 1156
Query 1538 GTGATCCTAAAAACACGA-GGTGGAGTTACCACAACGGTGGATCTTGGCCAGTA-TTGCT 1595
|||| ||||| ||||| | ||||||| ||||||||||| || ||||||||||| || ||
Sbjct 1157 GTGACCCTAAGAACAC-ACGGTGGAGCTACCACAACGGAGGCTCTTGGCCAGTGCTT-CT 1214
Query 1596 GTGGACGCTGACGGCGGCATGCATCAAGACTGGACGGCCTCAAATAGCGA-GACGTGCGA 1654
||| ||| ||||||||| |||| ||||| ||||| || |||||||| | |||| || |
Sbjct 1215 ATGGTTGCTAACGGCGGCAAGCATAAAGACCGGACGACCACAAATAGC-ACGACGGGCAA 1273
Query 1655 TTGA-TCTAATTGAATCACGGCTACACCGAGATTGCTGGCCGGAATACTATGATGGTAAG 1713
| || | | || |||| ||| |||| | |||||||| ||||| || || |||
Sbjct 1274 TAGAGT-TGGCGGAGGCACGACTATTGAAAGATGGATGGCCGGAGTACTACGACGGAAAG 1332
Query 1714 -CAAGGAAGGTACGTTGGAAAACAAGCAAGGAAGTACCAGACTTGGTCAATCGCGGGTTA 1772
| ||||||| | | |||||||| || || || | ||||| ||||||||||| || ||
Sbjct 1333 TCT-GGAAGGTTCATCGGAAAACAGGCCAGAAAATTTCAGACATGGTCAATCGCTGGCTA 1391
Query 1773 CTTGGTTGCGAAAATGATGCTTGAAGATCCTTCACATATTGGAATGATCTCTCTTGAAGA 1832
||||| || || |||||| | || ||||| | ||| | ||||||||||| | |||||
Sbjct 1392 TTTGGTGGCCAAGATGATGATGGATGATCCAACGCATGTAGGAATGATCTCAATGGAAGA 1451
Query 1833 AGACAAACAGATGAAACCTGTTATCAAGAGATCTGCTTCATGGACTT 1879
||| ||||| ||||||||| | | ||||||||| |||| |||||||
Sbjct 1452 AGAGAAACATATGAAACCTCCTCTTAAGAGATCTTCTTCTTGGACTT 1498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76409031470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5