BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09520.1 Length=1652 Score E Sequences producing significant alignments: (Bits) Value Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1 2303 0.0 Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967 1914 0.0 > Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1 Length=1598 Score = 2303 bits (1247), Expect = 0.0 Identities = 1473/1579 (93%), Gaps = 27/1579 (2%) Strand=Plus/Plus Query 2 AACGACACACGACGTCACCACAATTCTCAACTTTGGAGCTGCAGACACAATTCCGGCGAC 61 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AACGACACACGACGTCACGACAATTCTCAACTTT-GAGCTGCAGACACAATTCCGGCGAC 59 Query 62 GTTTACGATTCTGACACCGCCGAACCCACTTGTAGCAAATGGAAGAAGTTCAAAAA-AGA 120 | | ||||||| || |||||||| ||||||| |||||||||||||| ||||||| ||| Sbjct 60 GATAACGATTCCAACGCCGCCGAAATCACTTGTGGCAAATGGAAGAAG-TCAAAAAGAGA 118 Query 121 GTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTACAAA 180 ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 119 GTTGCTTTTGTACTGATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTATAAA 178 Query 181 ACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAATTGCTTCAGCTGGAATCAA 239 || ||||| ||||||||| || |||||||| |||||||||||||||||| |||||||||| Sbjct 179 ACTCCATTACAAGCAGCA-AACATACCTAATCTTGATGCAATTGCTTCATCTGGAATCAA 237 Query 240 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 297 Query 300 TCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGGCGCGTTTGAATCTATGGG 359 ||||||||||||||||||||||||||||||||| || || || ||||||||||||||||| Sbjct 298 TCTAATGGGTTATGATCCAAGAGTGTATTACCGAGGTCGCGGTGCGTTTGAATCTATGGG 357 Query 360 TGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTCAAATTTTGCAACTTTGGA 419 ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 358 TGCTGGATTAGCTATGTCACCAGGTGACATAGCTTTCAAGTCTAATTTTGCAACTTTGGA 417 Query 420 TGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACATTTCGAAGAAGAAGGACC 479 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 418 TGAGGATTCTGGAGTTGTTGTTAGTAGGAGAGCTGATCGACATTTCGAAGAAGAAGGACC 477 Query 480 TATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATTCCCTGAGTATGAAGTTAG 539 ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 478 GATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCTTCTTTCCCTGAGTATGAAGTTAG 537 Query 540 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAAACTTAGTGG 599 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 538 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAGACTTAGTGG 597 Query 600 GAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 659 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 598 GAATATATCTGGAACAGACCCGTTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 657 Query 660 GGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAACGAATTATCCCGGGAGAT 719 |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| Sbjct 658 GGATGAATCAGAAGAAGCTAATCACACAGCTAAAGTCGTTAACGAATTATCCAGGGAGAT 717 Query 720 ATCGCGCATTCTTGTTTCCCACCCGGTTAATGTAAAGAGAGCTGCACAAGGCAAGAATAT 779 |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 718 ATCGCGCATTCTTGTTTCTCATCCGGTTAATGTAAAGAGAGCTGCACAAGGAAAGAATAT 777 Query 780 TGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCACGA 839 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 778 TGCCAATCTTGTCCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCATGA 837 Query 840 GAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 899 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GAAGCACGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 897 Query 900 GTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTGGAGATTACCGGACGCTTCT 959 ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||| Sbjct 898 GTCCCTTGGTATTGACATTCTAGAAGCTCCGGGAGCCACTGGAGATTACCGGACACTTCT 957 Query 960 CACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1019 |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 958 CACATCAAAAGCAATTGCTATAGCCAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1017 Query 1020 TGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTCGG 1079 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1018 TGTCTTTGATCCAGCAGAAGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTTGG 1077 Query 1080 CTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACAAGGCTACATTGTTCAAAGT 1139 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1078 ATTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGACAAGGCAACATTGTTCAAAGT 1137 Query 1140 TCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCGCTAAGCTTCTATGGCAAGC 1199 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1138 CCGAGGCTTGGAAGCTGTGGATAAGGCGATACGTCAGCTCGCTAAGCTTCTATGGCATGC 1197 Query 1200 TGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1257 Query 1260 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAATGTGCCGGTTAAAGGACTT 1319 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1258 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTTACAATGTGCCGGCTAAAGGACTT 1317 Query 1320 TGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGACATCTTTAGACCCTTTTCCAC 1378 |||||| |||||||||||||||||||| || ||||||||| || || ||||||||||||| Sbjct 1318 TGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGACGTCGTTGGACCCTTTTCCAC 1376 Query 1379 TTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAAAGAAGAAGAAGACTGTGGGA 1438 |||||||| | || | || | ||||| || | || |||||||| | |||||| Sbjct 1377 TTCCAACG-A-AT-G--TC-ACTGAAA----CA--G-AA--GAAGAAGACG---GTGGGA 1418 Query 1439 GGAGGGAAGCTTCT-CTGGCGATTAGTGGAGATTCAGTCTCAGAGTTGAACGAGATTGCA 1497 || ||||||| || | ||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 1419 AGAAGGAAGCTCCTTC-GGCGATTAGTGGAGACTCAGTCTCAGAATTGAATGAGATTGCA 1477 Query 1498 GCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAATGATGGGAGTTATCACCAAG 1557 |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1478 TCTGCAAGAGGATGTCTTGGCCGTTTCCATGGTGGTGAAATGATGGGAGTCATCACCAAG 1537 Query 1558 TTTCTGAAGTTGGATGTAT 1576 ||||| ||| | ||||||| Sbjct 1538 TTTCTTAAGCTAGATGTAT 1556 > Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967 Length=1488 Score = 1914 bits (1036), Expect = 0.0 Identities = 1325/1465 (90%), Gaps = 17/1465 (1%) Strand=Plus/Plus Query 105 AGAAGTTCAAAAA-AGAGTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATAC 163 ||||| ||||||| ||||| || ||| | ||||| |||||||| |||||||||||||||| Sbjct 18 AGAAG-TCAAAAAGAGAGTAGCTTTTGTCCTAATCGATGGTTTAGGAGATGTATCAATAC 76 Query 164 C-AAGATTAGGTTACAAAACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAAT 221 | ||| |||||||||||||| ||||| |||| |||| || |||||||| ||||| ||||| Sbjct 77 CGAAG-TTAGGTTACAAAACTCCATTACAAGAAGCA-AACATACCTAATCTTGACGCAAT 134 Query 222 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAG 281 ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 135 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCTGTAGAAGTTGGTTTAGGTTGTGGTAG 194 Query 282 TGACACTGCTCATCTTTCTCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGG 341 ||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||| Sbjct 195 TGACACTGCTCATCTTTCTCTTATGGGTTATGATCCAAGAGTGTATTATAGAGGTCGTGG 254 Query 342 CGCGTTTGAATCTATGGGTGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTC 401 |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 255 TGCGTTTGAGTCTATGGGTGCAGGGTTAGCTATGTCACCTGGTGATATAGCTTTCAAGTC 314 Query 402 AAATTTTGCAACTTTGGATGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 461 ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 315 TAATTTTGCAACGTTGGATGAGAAATCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 374 Query 462 TTTCGAAGAAGAAGGACCTATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATT 521 ||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| || Sbjct 375 TTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGAATGAAACTTCAATCTTT 434 Query 522 CCCTGAGTATGAAGTTAGAGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAA 581 ||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 435 CCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAGCATAGGTGTGGTGTGGTTGTAAA 494 Query 582 AGGGCCAAAACTTAGTGGGAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCT 641 ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 495 GGGGCCAAGACTTAGTGGGAATATATCTGGAACAGATCCATTGAAAGATAATCGTTTGCT 554 Query 642 TCTTGAAGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAA 701 |||||| |||||||||||||||||||||||||||||||||||||| || ||||| || || Sbjct 555 TCTTGAGGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACTGCTAAAGTTGTTAA 614 Query 702 CGAATTATCCCGGGAGATATCGCGCATTCTTGTTTCCCACCCGGTTAATGTA-AAGAGAG 760 ||| ||||| | |||||||||| ||||||||| ||||||||| |||||| | || |||| Sbjct 615 CGAGTTATCAAGAGAGATATCGCACATTCTTGTATCCCACCCGATTAATGCAGAA-AGAG 673 Query 761 CTGCACAAGGCAAGAATATTGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCG 820 || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 674 CTACACAAGGCAAGAATATTGCGAATCTTGTTCTTTTACGAGGCTGTGGTATTCGAATCG 733 Query 821 AGGTTCCTCCTTTTCACGAGAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGA 880 |||| ||||||||||| |||||||| || |||||||||||||||||||||||||| |||| Sbjct 734 AGGTACCTCCTTTTCAAGAGAAGCACGGCTTGTGGCCGTGTATGGTAGCACCAACAAAGA 793 Query 881 TTATAGCCGGACTTGGTATGTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTG 940 ||||||| |||||||||||||| || |||||||| ||||| ||||||| |||||| |||| Sbjct 794 TTATAGCTGGACTTGGTATGTCTCTCGGTATTGACATTCTAGAAGCTCCGGGAGCTACTG 853 Query 941 GAGATTACCGGACGCTTCTCACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTC 1000 ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||| Sbjct 854 GAGATTACCGGACGCTTCTGACATCGAAAGCAATTGCTATAGCCAATGCGCTCTCAGCTC 913 Query 1001 CTTTGAATCCCTGCCCAAATGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGT 1060 |||||||||||||||||||||| |||| ||| | |||||||||||| ||||| ||||||| Sbjct 914 CTTTGAATCCCTGCCCAAATGTTTTTGTACCGGGAGAGGACGGGCACAAACCAGGAAGGT 973 Query 1061 CAGATGGTTACGATTTCGGCTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACA 1120 |||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||| Sbjct 974 CAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATGATGCTGGTCATGACA 1033 Query 1121 AGGCTACATTGTTCAAAGTTCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCG 1180 |||| ||| |||||||||||||||| || |||||||| ||||| || || |||||||| | Sbjct 1034 AGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGGCAATTCGTCAGCTTG 1093 Query 1181 CTAAGCTTCTATGGCAAGCTGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTG 1240 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1094 CTAAGCTTTTATGGCAAGCTGAATCTTCTACAAATTACCAGTATTTCTTGTGTGTGACCG 1153 Query 1241 GTGATCATTCTACTCCAGTTGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAA 1300 |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1154 GTGATCATTCAACTCCTGTTGAGTATGGGGACCACAGCTTCGAGCCTGTCCCATTCACAA 1213 Query 1301 TGTGCCGGTTAAAG-GACTTTGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGAC 1358 |||| || |||| | ||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 1214 TGTGTCGATTAA-GTGACTTTGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGAC 1271 Query 1359 ATCTTTAGACCCTTTTCCACTTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAA 1418 |||||| |||||||||||||||||||| | | | | ||| || ||| |||||| | ||| Sbjct 1272 ATCTTTGGACCCTTTTCCACTTCCAACAGTTGTGGAATCAAGCGAAGATGTCACC--AAA 1329 Query 1419 AGAAGAAGAAGACTGTGGGAGGAGGGAAGCTTCTCTGGCGATTAGTGGAGATTCAGTCT- 1477 | || |||||| |||||||||||||| || ||| ||| ||| ||||||||||||| | Sbjct 1330 C-ATGAGGAAGACAGTGGGAGGAGGGAAACTCCTCCGGCAATTGGTGGAGATTCAGT-TG 1387 Query 1478 CAGAGTTGAACGAGATTGCAGCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1537 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1388 CAGAGTTGAATGAGATTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1447 Query 1538 TGATGGGAGTTATCACCAAGTTTCT 1562 |||||||||| ||||| |||||||| Sbjct 1448 TGATGGGAGTCATCACTAAGTTTCT 1472 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61934738370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5