BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09520.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1 2303 0.0
Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967 1914 0.0
> Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1
Length=1598
Score = 2303 bits (1247), Expect = 0.0
Identities = 1473/1579 (93%), Gaps = 27/1579 (2%)
Strand=Plus/Plus
Query 2 AACGACACACGACGTCACCACAATTCTCAACTTTGGAGCTGCAGACACAATTCCGGCGAC 61
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AACGACACACGACGTCACGACAATTCTCAACTTT-GAGCTGCAGACACAATTCCGGCGAC 59
Query 62 GTTTACGATTCTGACACCGCCGAACCCACTTGTAGCAAATGGAAGAAGTTCAAAAA-AGA 120
| | ||||||| || |||||||| ||||||| |||||||||||||| ||||||| |||
Sbjct 60 GATAACGATTCCAACGCCGCCGAAATCACTTGTGGCAAATGGAAGAAG-TCAAAAAGAGA 118
Query 121 GTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTACAAA 180
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 GTTGCTTTTGTACTGATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTATAAA 178
Query 181 ACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAATTGCTTCAGCTGGAATCAA 239
|| ||||| ||||||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct 179 ACTCCATTACAAGCAGCA-AACATACCTAATCTTGATGCAATTGCTTCATCTGGAATCAA 237
Query 240 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 297
Query 300 TCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGGCGCGTTTGAATCTATGGG 359
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 298 TCTAATGGGTTATGATCCAAGAGTGTATTACCGAGGTCGCGGTGCGTTTGAATCTATGGG 357
Query 360 TGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTCAAATTTTGCAACTTTGGA 419
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 358 TGCTGGATTAGCTATGTCACCAGGTGACATAGCTTTCAAGTCTAATTTTGCAACTTTGGA 417
Query 420 TGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACATTTCGAAGAAGAAGGACC 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TGAGGATTCTGGAGTTGTTGTTAGTAGGAGAGCTGATCGACATTTCGAAGAAGAAGGACC 477
Query 480 TATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATTCCCTGAGTATGAAGTTAG 539
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 478 GATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCTTCTTTCCCTGAGTATGAAGTTAG 537
Query 540 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAAACTTAGTGG 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAGACTTAGTGG 597
Query 600 GAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 659
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAATATATCTGGAACAGACCCGTTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 657
Query 660 GGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAACGAATTATCCCGGGAGAT 719
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 658 GGATGAATCAGAAGAAGCTAATCACACAGCTAAAGTCGTTAACGAATTATCCAGGGAGAT 717
Query 720 ATCGCGCATTCTTGTTTCCCACCCGGTTAATGTAAAGAGAGCTGCACAAGGCAAGAATAT 779
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 718 ATCGCGCATTCTTGTTTCTCATCCGGTTAATGTAAAGAGAGCTGCACAAGGAAAGAATAT 777
Query 780 TGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCACGA 839
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 TGCCAATCTTGTCCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCATGA 837
Query 840 GAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAGCACGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 897
Query 900 GTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTGGAGATTACCGGACGCTTCT 959
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 898 GTCCCTTGGTATTGACATTCTAGAAGCTCCGGGAGCCACTGGAGATTACCGGACACTTCT 957
Query 960 CACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1019
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 958 CACATCAAAAGCAATTGCTATAGCCAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1017
Query 1020 TGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTCGG 1079
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 TGTCTTTGATCCAGCAGAAGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTTGG 1077
Query 1080 CTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACAAGGCTACATTGTTCAAAGT 1139
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 ATTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGACAAGGCAACATTGTTCAAAGT 1137
Query 1140 TCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCGCTAAGCTTCTATGGCAAGC 1199
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1138 CCGAGGCTTGGAAGCTGTGGATAAGGCGATACGTCAGCTCGCTAAGCTTCTATGGCATGC 1197
Query 1200 TGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1257
Query 1260 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAATGTGCCGGTTAAAGGACTT 1319
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1258 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTTACAATGTGCCGGCTAAAGGACTT 1317
Query 1320 TGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGACATCTTTAGACCCTTTTCCAC 1378
|||||| |||||||||||||||||||| || ||||||||| || || |||||||||||||
Sbjct 1318 TGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGACGTCGTTGGACCCTTTTCCAC 1376
Query 1379 TTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAAAGAAGAAGAAGACTGTGGGA 1438
|||||||| | || | || | ||||| || | || |||||||| | ||||||
Sbjct 1377 TTCCAACG-A-AT-G--TC-ACTGAAA----CA--G-AA--GAAGAAGACG---GTGGGA 1418
Query 1439 GGAGGGAAGCTTCT-CTGGCGATTAGTGGAGATTCAGTCTCAGAGTTGAACGAGATTGCA 1497
|| ||||||| || | ||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1419 AGAAGGAAGCTCCTTC-GGCGATTAGTGGAGACTCAGTCTCAGAATTGAATGAGATTGCA 1477
Query 1498 GCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAATGATGGGAGTTATCACCAAG 1557
|||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1478 TCTGCAAGAGGATGTCTTGGCCGTTTCCATGGTGGTGAAATGATGGGAGTCATCACCAAG 1537
Query 1558 TTTCTGAAGTTGGATGTAT 1576
||||| ||| | |||||||
Sbjct 1538 TTTCTTAAGCTAGATGTAT 1556
> Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967
Length=1488
Score = 1914 bits (1036), Expect = 0.0
Identities = 1325/1465 (90%), Gaps = 17/1465 (1%)
Strand=Plus/Plus
Query 105 AGAAGTTCAAAAA-AGAGTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATAC 163
||||| ||||||| ||||| || ||| | ||||| |||||||| ||||||||||||||||
Sbjct 18 AGAAG-TCAAAAAGAGAGTAGCTTTTGTCCTAATCGATGGTTTAGGAGATGTATCAATAC 76
Query 164 C-AAGATTAGGTTACAAAACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAAT 221
| ||| |||||||||||||| ||||| |||| |||| || |||||||| ||||| |||||
Sbjct 77 CGAAG-TTAGGTTACAAAACTCCATTACAAGAAGCA-AACATACCTAATCTTGACGCAAT 134
Query 222 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAG 281
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 135 TGCTTCAGCTGGAATCAATGGTTTAATGGATCCTGTAGAAGTTGGTTTAGGTTGTGGTAG 194
Query 282 TGACACTGCTCATCTTTCTCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGG 341
||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||
Sbjct 195 TGACACTGCTCATCTTTCTCTTATGGGTTATGATCCAAGAGTGTATTATAGAGGTCGTGG 254
Query 342 CGCGTTTGAATCTATGGGTGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTC 401
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 255 TGCGTTTGAGTCTATGGGTGCAGGGTTAGCTATGTCACCTGGTGATATAGCTTTCAAGTC 314
Query 402 AAATTTTGCAACTTTGGATGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 461
||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 315 TAATTTTGCAACGTTGGATGAGAAATCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACA 374
Query 462 TTTCGAAGAAGAAGGACCTATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATT 521
||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| ||
Sbjct 375 TTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGAATGAAACTTCAATCTTT 434
Query 522 CCCTGAGTATGAAGTTAGAGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAA 581
||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 435 CCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAGCATAGGTGTGGTGTGGTTGTAAA 494
Query 582 AGGGCCAAAACTTAGTGGGAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCT 641
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 GGGGCCAAGACTTAGTGGGAATATATCTGGAACAGATCCATTGAAAGATAATCGTTTGCT 554
Query 642 TCTTGAAGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAA 701
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 555 TCTTGAGGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACTGCTAAAGTTGTTAA 614
Query 702 CGAATTATCCCGGGAGATATCGCGCATTCTTGTTTCCCACCCGGTTAATGTA-AAGAGAG 760
||| ||||| | |||||||||| ||||||||| ||||||||| |||||| | || ||||
Sbjct 615 CGAGTTATCAAGAGAGATATCGCACATTCTTGTATCCCACCCGATTAATGCAGAA-AGAG 673
Query 761 CTGCACAAGGCAAGAATATTGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCG 820
|| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 674 CTACACAAGGCAAGAATATTGCGAATCTTGTTCTTTTACGAGGCTGTGGTATTCGAATCG 733
Query 821 AGGTTCCTCCTTTTCACGAGAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGA 880
|||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||
Sbjct 734 AGGTACCTCCTTTTCAAGAGAAGCACGGCTTGTGGCCGTGTATGGTAGCACCAACAAAGA 793
Query 881 TTATAGCCGGACTTGGTATGTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTG 940
||||||| |||||||||||||| || |||||||| ||||| ||||||| |||||| ||||
Sbjct 794 TTATAGCTGGACTTGGTATGTCTCTCGGTATTGACATTCTAGAAGCTCCGGGAGCTACTG 853
Query 941 GAGATTACCGGACGCTTCTCACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTC 1000
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 854 GAGATTACCGGACGCTTCTGACATCGAAAGCAATTGCTATAGCCAATGCGCTCTCAGCTC 913
Query 1001 CTTTGAATCCCTGCCCAAATGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGT 1060
|||||||||||||||||||||| |||| ||| | |||||||||||| ||||| |||||||
Sbjct 914 CTTTGAATCCCTGCCCAAATGTTTTTGTACCGGGAGAGGACGGGCACAAACCAGGAAGGT 973
Query 1061 CAGATGGTTACGATTTCGGCTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACA 1120
|||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 974 CAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATGATGCTGGTCATGACA 1033
Query 1121 AGGCTACATTGTTCAAAGTTCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCG 1180
|||| ||| |||||||||||||||| || |||||||| ||||| || || |||||||| |
Sbjct 1034 AGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGGCAATTCGTCAGCTTG 1093
Query 1181 CTAAGCTTCTATGGCAAGCTGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTG 1240
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1094 CTAAGCTTTTATGGCAAGCTGAATCTTCTACAAATTACCAGTATTTCTTGTGTGTGACCG 1153
Query 1241 GTGATCATTCTACTCCAGTTGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAA 1300
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1154 GTGATCATTCAACTCCTGTTGAGTATGGGGACCACAGCTTCGAGCCTGTCCCATTCACAA 1213
Query 1301 TGTGCCGGTTAAAG-GACTTTGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGAC 1358
|||| || |||| | ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1214 TGTGTCGATTAA-GTGACTTTGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGAC 1271
Query 1359 ATCTTTAGACCCTTTTCCACTTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAA 1418
|||||| |||||||||||||||||||| | | | | ||| || ||| |||||| | |||
Sbjct 1272 ATCTTTGGACCCTTTTCCACTTCCAACAGTTGTGGAATCAAGCGAAGATGTCACC--AAA 1329
Query 1419 AGAAGAAGAAGACTGTGGGAGGAGGGAAGCTTCTCTGGCGATTAGTGGAGATTCAGTCT- 1477
| || |||||| |||||||||||||| || ||| ||| ||| ||||||||||||| |
Sbjct 1330 C-ATGAGGAAGACAGTGGGAGGAGGGAAACTCCTCCGGCAATTGGTGGAGATTCAGT-TG 1387
Query 1478 CAGAGTTGAACGAGATTGCAGCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1537
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1388 CAGAGTTGAATGAGATTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATGGCGGTGAAA 1447
Query 1538 TGATGGGAGTTATCACCAAGTTTCT 1562
|||||||||| ||||| ||||||||
Sbjct 1448 TGATGGGAGTCATCACTAAGTTTCT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5