BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09530.1

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489807 jgi|Araly1|489807|fgenesh2_kg.6__2941__AT4G09530.1         422    9e-118


> Ahg489807 jgi|Araly1|489807|fgenesh2_kg.6__2941__AT4G09530.1
Length=296

 Score =  422 bits (228),  Expect = 9e-118
 Identities = 274/296 (93%), Gaps = 3/296 (1%)
 Strand=Plus/Plus

Query  1    ATGCCGCACAAGGTCATTGACATGCACTTCCACGAaagagaagaagaagaagaTACTGGT  60
            |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| 
Sbjct  1    ATGCCGAACAAGGTCATTGACATGCACTTCCACCAAAGAGAAGAAGAAGAAGATTCTGGA  60

Query  61   GAGAGTAG---ATCATCCTCAAGAACACCGAGAGGGCATTTCGTCGTTTACGTCGGTACG  117
            ||||| ||   |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  61   GAGAGCAGATCATCATCCTCAAGAACACCCAGAGGGCATTTCGTGGTTTACGTCGGTACG  120

Query  118  AAGAAGAAGTTGGAAAGATTCGTGATCCCCACAACGTTTTTGAAGAGCCCTTCATTCCAA  177
            || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  121  AATAAGAAGTTGGAAAGATTCGTGATCCCCACAAAGTTTTTGAAGAGCCCTTCTTTCCAA  180

Query  178  AAGCTTCTAGACAATGCGGCCGAGGAATTCGGTTACGCGGAAGCTCACCGGGACAAGATT  237
            |||||||||||||||||||| || ||||||||||||||||| ||| ||| | ||||||||
Sbjct  181  AAGCTTCTAGACAATGCGGCGGAAGAATTCGGTTACGCGGAGGCTTACCAGAACAAGATT  240

Query  238  GTATTGCCTTGTGATGTCTCTACTTTCCGAAGTCTTGTCATGTTCCTGACTTCTCA  293
            || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GTCTTGCCCTGTGATGTCTCTAGTTTCCGAAGTCTTGTCATGTTCCTGACTTCTCA  296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10988809632


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5