BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09550.1

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942728 jgi|Araly1|942728|scaffold_603272.1                        335    2e-91


> Ahg942728 jgi|Araly1|942728|scaffold_603272.1
Length=252

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 206/218 (94%), Gaps = 1/218 (0%)
 Strand=Plus/Plus

Query  93   TGATCAGTATGGATGAGGAGGCATCTCGGACAGCAAGAGAGTCACTAGAGCTTGTGTTTC  152
            ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||
Sbjct  13   TGATCAGTATGGATGAGGAAGCATCTAGGACTGCAAGAGAGTCACTAGAGCTTGTGTTTC  72

Query  153  GCATGTCAAACATCTTGGACACGGGTTTGGACCGGCATACTTTGTCAGTTCTCATAGCTC  212
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  73   GCATGTCAAACATCTTGGACACGGGACTGGACCGGCATACTTTGTCAGTTCTCATAGCTC  132

Query  213  TTTGTGATCTTGGTGTTAACCCTGAAGCTCTAGCTACTGTTGTGAAAGAGCTTCGTCGCG  272
            |||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||
Sbjct  133  TTTGTGATCTTGGTGTTAACCCAGAGGCTCTAGCTACTGTTGTGAAGGAGCTTCGACGCG  192

Query  273  AGTCTATCCCCGATTCTGTCACAACCACACCATCTATA  310
            |||||||||| |||||||||||||| |||||||| |||
Sbjct  193  AGTCTATCCCTGATTCTGTCACAACTACACCATC-ATA  229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18162060364


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5