BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G09550.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value Ahg942728 jgi|Araly1|942728|scaffold_603272.1 335 2e-91 > Ahg942728 jgi|Araly1|942728|scaffold_603272.1 Length=252 Score = 335 bits (181), Expect = 2e-91 Identities = 206/218 (94%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 93 TGATCAGTATGGATGAGGAGGCATCTCGGACAGCAAGAGAGTCACTAGAGCTTGTGTTTC 152 ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| Sbjct 13 TGATCAGTATGGATGAGGAAGCATCTAGGACTGCAAGAGAGTCACTAGAGCTTGTGTTTC 72 Query 153 GCATGTCAAACATCTTGGACACGGGTTTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 212 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 73 GCATGTCAAACATCTTGGACACGGGACTGGACCGGCATACTTTGTCAGTTCTCATAGCTC 132 Query 213 TTTGTGATCTTGGTGTTAACCCTGAAGCTCTAGCTACTGTTGTGAAAGAGCTTCGTCGCG 272 |||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| Sbjct 133 TTTGTGATCTTGGTGTTAACCCAGAGGCTCTAGCTACTGTTGTGAAGGAGCTTCGACGCG 192 Query 273 AGTCTATCCCCGATTCTGTCACAACCACACCATCTATA 310 |||||||||| |||||||||||||| |||||||| ||| Sbjct 193 AGTCTATCCCTGATTCTGTCACAACTACACCATC-ATA 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18162060364 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5