BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09560.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942729 jgi|Araly1|942729|scaffold_603273.1 1847 0.0
> Ahg942729 jgi|Araly1|942729|scaffold_603273.1
Length=1390
Score = 1847 bits (1000), Expect = 0.0
Identities = 1265/1393 (91%), Gaps = 17/1393 (1%)
Strand=Plus/Plus
Query 143 TTAAAGCTTTAGAAAACATGATC-CGTTCTTCGATTGTAATTTTATCTCTGTTACTAATT 201
||||||||| || |||||||| | ||||||||||||| ||| || ||||||||||||||
Sbjct 7 TTAAAGCTTAAGGAAACATGA-CTCGTTCTTCGATTGCAATCTTGTCTCTGTTACTAATG 65
Query 202 TCACACTTGGTTTCTGCAAAAGTTCTGTTGATCGGTAACAGCACATCTCTCTCCTTCGAC 261
||||||||||||||||||||| |||| ||||| || || | ||||||||| |||||||||
Sbjct 66 TCACACTTGGTTTCTGCAAAAATTCTATTGATAGGGAAGAACACATCTCTTTCCTTCGAC 125
Query 262 GACGTCGAAGCCACTTTCACTCCGATGATTAAGAGATCGGATCAAGGCGGTGTGTTGTAT 321
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 126 GACATCGAAGCCAATTTCACTCCGATGATTAAAAGATCGGATCAAGGCGGTGTGTTGTAT 185
Query 322 GTAGCAGAGCCACTCGATGCTTGTTCGGATTTGGTGAATACGGTGAATGTGAAAAATGGA 381
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 186 GTAGCAGAGCCGCTCGATGCTTGTTCGGATTTGGTTAATACGGTGAATGTGAAAAATGGA 245
Query 382 ACTACTGTGT-CTCCTCCGTATGTGTTGATTATCCGCGGTGGTTGTAGTTTCGAAGATAA 440
| | ||| | ||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 246 TCAAGTGT-TCCTCCTCCGTATGTTTTGATTATCCGCGGTGGCTGTAGTTTTGAAGAGAA 304
Query 441 GATTAGGAATGCTCAAAAGGCTGGTTATAAAGCTGCTATTGTTTATGACTATGAAGATTT 500
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 305 GATTAGGAATGCGCAAAAGGCTGGATATAAAGCTGCTATTGTTTATGATTATGAAGATTA 364
Query 501 TGGGTTCTTAGTATCAATGGCAGGAAACCCCTCTGGTGTACTTATTTATGGTACGTTTGT 560
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 365 TGGGTTCTTAGTATCAATGGCTGGAAATCCCTCTGGTGTACTTATATATGGTACGTTTGT 424
Query 561 CTCCAAAGCAACTGGGGAAGTACTTAA-AGAGTATGCGGGTCGTACCGATTTTGAAGTGT 619
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 425 CTCCAAAGCAACTGGGGAAGTAC-TAACAGAGTATGCGGGTCGTACCGATTTTGAAGTGT 483
Query 620 GGCTCATGCCAAGTTTCGAGACTTCAGCATGGTCAATCATGGCTATTTCTTTCATATCTC 679
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 484 GGCTCATGCCAAGTTTCGAGACTTCAGCGTGGTCAATCATGGCTATCTCGTTCATATCTC 543
Query 680 TCCTCGCCATGTCGGCTGTGCTCGCTACTTGCTTCTTTGTCCGTAGGCATCGAGTTAGGC 739
||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 544 TCCTCGCTATGTCTGCGGTGCTCGCCACTTGCTTCTTTGTCCGTAGGCATCGAGTTAGGC 603
Query 740 GTCGGCGTATTCTGGCTCTTAATGGCAATGACTTTCATCGTATGCCCAAAAGCATGATAA 799
| |||||||||||||||||||||||||||||||||| ||||||| |||||| | || |||
Sbjct 604 GCCGGCGTATTCTGGCTCTTAATGGCAATGACTTTCCTCGTATGGCCAAAAACTTGCTAA 663
Query 800 TACGTATGCCTACTACCATATTTAACGGTATTTGTGATGAAGCAACTACATCTATATT-G 858
||| ||||||||||| |||||||| ||| |||| ||||||||| |||| ||||| || |
Sbjct 664 AACGCATGCCTACTACAATATTTAAGGGTGTTTGCGATGAAGCATCTACTTCTAT-TTCG 722
Query 859 TGCTGC-ATATGCCTTGAGAATTATGAG-AAAGGGGACAAGCTAAGGATCCTACCTTGCC 916
|| ||| |||||| ||||| ||||| | | || ||||||||||||||||| |||||||
Sbjct 723 TG-TGCTATATGCATTGAGGATTAT-CGCATCGGAGACAAGCTAAGGATCCTCCCTTGCC 780
Query 917 ATCACAAATTTCATGTTGCTTGTGTAGACTTGTGGCTTGGCCAGAGGAAATCCTTTTGCC 976
|||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||
Sbjct 781 ATCACAAATTTCATGTTGGATGTGTAGACTTGTGGCTTGGCCAAAGGAGATCATTTTGCC 840
Query 977 CGGTTTGCAAACGCGATGCAAGAAGCATCAGTACCGACAAGCCCCCATCAGAGCACACAC 1036
||||||||||||||||||| ||||| ||||| | || | |||| |||||||||||||||
Sbjct 841 CGGTTTGCAAACGCGATGCGAGAAGTATCAGCATTGATATGCCCGCATCAGAGCACACAC 900
Query 1037 CCTTTCTTTCTCGGACTC-CTAGCATGACCCCGACGTCATCGTTTCTCTTATCATCATCC 1095
|||| ||| ||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCTTGCTTACTCCTA-GCAATAGCATGACCCCGACGTCATCGTTTCTCTTATCATCATCC 959
Query 1096 TCCACAACCCCATTGCAGTCATCTCATGAGCTACCAATATCCATCAGAGTAGACCCTTCT 1155
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 TCCACAACCCCATTGCAGTCATCTCATGAGCTACCAATATTTATCAGAGTAGACCCTTCT 1019
Query 1156 TTACCATCCACCTCAATGCAGCCACACACAGTTCCTATGTATCTCTCCCACTCTCGCTCC 1215
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1020 TTACCATCCACCTCAATGCAGCCACACACAGTCCCTATGTATCTTTCCCACTCTCGCTCC 1079
Query 1216 CACACAAGCTTCCAAAATGGATCAAACCGATTTTCCCGGCCTATACCAGTTAGCCGGAGT 1275
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1080 CACACAAGCTTCCAAAATGGGTCATACCGCTTTTCCCGGCCTATACCAGTTAGCCGGAGT 1139
Query 1276 TCAGCAGATCTCAGGAACGCCGTTTCCCAAAGATCTTACAACTCACCCCACCAGGTTTCT 1335
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1140 TCAGCAGATCTCAGGAACGCCGTTTCCCAAAGATCTTACAACTCACCCCGCCAGGGTTCT 1199
Query 1336 TTGCCTCGTTTCCTCCACTCAAGATATACGCACATACTTGGCCCGGGAAATGCATCAAGA 1395
|||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1200 TTGCCTCGTTCCCTCCACTCAAGATATACGCACATACTTAGCCCAGGAAATGCATCAAGG 1259
Query 1396 AGCCAGGTTGTTGGGTTGTTAACAAGCCAGCGCGAGCATTCACTTCATCAAAATGACTCG 1455
||| ||| ||||| | || |||||||||||||||| |||||||||| | ||| ||||||
Sbjct 1260 AGCTGGGTGGTTGGATCGTCAACAAGCCAGCGCGAGAATTCACTTCACCTAAACGACTCG 1319
Query 1456 CGCAGGTCTTTCATTCACTTTGCATCTGCGAGCTC-CTTACCAGGCTGGTAAAACCGCAA 1514
|||||||||||| ||||||| ||||||||||| || ||||||||| |||| | | |
Sbjct 1320 CGCAGGTCTTTCCCTCACTTTTTGTCTGCGAGCTCTCT-ACCAGGCTGCTAAA-CTGTTA 1377
Query 1515 AAAAGGTAACACC 1527
|||||||||||||
Sbjct 1378 AAAAGGTAACACC 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5