BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09570.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1 2663 0.0
Ahg913433 jgi|Araly1|913433|Al_scaffold_0001_3687 1779 0.0
Ahg941887 jgi|Araly1|941887|scaffold_602431.1 429 3e-119
Ahg345668 jgi|Araly1|345668|fgenesh1_pg.C_scaffold_4002010 331 9e-90
> Ahg489809 jgi|Araly1|489809|fgenesh2_kg.6__2943__AT4G09570.1
Length=1700
Score = 2663 bits (1442), Expect = 0.0
Identities = 1619/1703 (95%), Gaps = 17/1703 (1%)
Strand=Plus/Plus
Query 11 aaaaaaaGGCAGAGACTTTCGAAATCAAGAACAATGGAGAAACCAAACCCTAGAAGACCC 70
||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGGAAGAGACTTTCGAAATCAACAACCATGGAGAAACCAAACCCTAGAAGACCC 60
Query 71 TCAAACAGTGTTCTTCCATACGAAACACCAAGATTAAGAGATCACTATCTCCTCGGCAAA 130
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAAGCAGTGTTCTTCCATACGAAACACCAAGATTAAGAGATCACTACCTCCTCGGCAAA 120
Query 131 AAGCTAGGCCAAGGCCAATTTGGAACAACCTATCTCTGTACAGAGAAATCATCATCAGCT 190
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 121 AAGCTAGGCCAAGGCCAATTTGGAACAACATATCTCTGTACAGAGAAATCATCATCTTCT 180
Query 191 AATTACGCTTGCAAATCAATCCCAAAACGTAAGCTTGTATGTCGTGAAGACTACGAAGAT 250
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 181 AACTACGCTTGCAAATCAATCCCAAAACGCAAGCTTGTATGTCGTGAAGACTATGAAGAT 240
Query 251 GTATGGCGTGAGATTCAGATCATGCATCATCTCTCTGAGCATCCTAATGTTGTTAGAATC 310
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 GTATGGCGTGAGATTCAGATCATGCATCATCTCTCTGAGCATCCAAATGTGGTTAGAATC 300
Query 311 AAGGGTACTTATGAAGACTCTGTTTTTGTTCACATTGTTATGGAAGTTTGTGAAGGTGGT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGGTACTTATGAAGACTCTGTTTTTGTTCACATTGTTATGGAAGTTTGTGAAGGTGGT 360
Query 371 GAGCTTTTTGATCGGATTGTTTCTAAAGGGTGTTTTAGTGAACGTGAAGCTGCTAAGTTG 430
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 361 GAGCTTTTTGATCGGATTGTTTCTAAAGGGCATTTTAGTGAACGTGAAGCTGTTAAGTTG 420
Query 431 ATTAAGACTATTCTTGGTGTTGTTGAGGCTTGTCATTCTCTTGGTGTTATGCATAGAGAT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTAAGACTATTCTTGGTGTTGTTGAGGCTTGTCATTCTCTTGGTGTTATGCATAGAGAT 480
Query 491 CTTAAGCCTGAGAATTTCTTGTTTGATAGTCCCAGTGATGATGCTAAGCTTAAAGCTACA 550
|||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct 481 CTTAAGCCTGAGAATTTCTTGTTTGATAGTGCCAGTGATGATGCTAAGCTTCAGGCTACG 540
Query 551 GACTTTGGTTTGTCTGTCTTCTACAAGCCAGGGCAGTATCTGTATGATGTAGTTGGAAGT 610
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTTTGGTTTGTCTGTCTTCTATAAGCCAGGGCAGTATCTGTATGATGTAGTTGGAAGT 600
Query 611 CCGTATTATGTTGCACCTGAGGTTCTGAAGAAATGTTATGGACCAGAGATAGACGTGTGG 670
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 CCGTATTATGTTGCACCTGAGGTTCTGAAAAAATGTTATGGACCAGAGATAGACGTGTGG 660
Query 671 AGCGCCGGTGTTATC-TTGTACATCTTACTAAGTGGGGTTCCTCCTTTTTGGGCAGAAAC 729
||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 661 AGCGCCGGTGTTATCCTT-TACATCTTACTAAGTGGAGTTCCTCCGTTTTGGGCAGAAAC 719
Query 730 CGAGTCAGGAATCTTTAGGCAGATATTGCAAGGGAAGATAGATTTTAAATCTGATCCGTG 789
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAGTCAGGAATCTTTAGACAGATATTGCAAGGGAAGATAGATTTTAAATCTGATCCGTG 779
Query 790 GCCTACTATCTCAGAAGGTGCTAAAGATTTGATTTACAAAATGCTCGATAGGAGCCCCAA 849
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCCTAGTATCTCAGAAGGTGCTAAAGATTTGATTTACAAAATGCTCGATAGGAGCCCCAA 839
Query 850 GAAACGTATTTCTGCACATGAAGCATTGTGTCACCCTTGGATTGTTGATGAACATGCTGC 909
||||||||||||||| || ||||| ||||| |||||||||||| |||||||||| |||||
Sbjct 840 GAAACGTATTTCTGCGCACGAAGCTTTGTGCCACCCTTGGATTATTGATGAACAAGCTGC 899
Query 910 ACCAGACAAGCCTCTCGACCCAGCAGTCTTGTCGCGACTTAAGCAGTTCTCGCAAATGAA 969
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 900 ACCAGACAAGCCTCTCGATCCAGCAGTCTTGTCACGACTAAAGCAGTTCTCGCAAATGAA 959
Query 970 TAAAATCAAGAAAATGGCCTTACGAGTAATCGCGGAGAGACTCTCGGAGGAAGAGATTGG 1029
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 960 TAAAATCAAGAAAATGGCCTTACGAGTAATTGCTGAGAGACTCTCGGAGGAAGAGATTGG 1019
Query 1030 TGGTCTGAAGGAATTGTTCAAAATGATAGATACAGACAACAGTGGAACAATCACCTTTGA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGTCTGAAGGAATTGTTCAAAATGATAGATACAGACAACAGTGGAACAATCACCTTTGA 1079
Query 1090 AGAGCTTAAAGCAGGTCTAAAGAGAGTTGGATCTGAATTGATGGAATCAGAAATCAAGTC 1149
||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1080 AGAACTTAAAGCAGGTCTGAAGAGAGTTGGATCTGAACTGATGGAATCAGAAATTAAGTC 1139
Query 1150 TCTTATGGATGCGGCGGATATAGACAACAGTGGGACAATAGACTACGGTGAATTCCTAGC 1209
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1140 TCTTATGGATGCGGCGGATATAGACAACAGCGGGACAATAGATTACGGTGAATTCCTAGC 1199
Query 1210 AGCGACATTACATATAAACAAGATGGAGAGAGAAGAGAACTTGGTGGTTGCGTTTTCATA 1269
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1200 AGCGACATTACATATAAACAAGATGGAGAGAGAGGAGAATTTGGTGGTTGCGTTTTCCTA 1259
Query 1270 CTTTGATAAAGATGGTAGCGGTTATATCACCATTGACGAGCTTCAACAAGCCTGCACAGA 1329
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 CTTTGATAAAGACGGTAGCGGTTATATAACCATTGACGAGCTTCAACAAGCCTGCACAGA 1319
Query 1330 GTTTGGTCTCTGTGACACTCCTCTTGATGACATGATCAAAGAGATTGATCTTGATAATGA 1389
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 1320 GTTTGGTCTCTGTGACACTCCTCTCGACGACATGATCAAAGAGATTGATCTTGACAATGA 1379
Query 1390 CGGGAAGATTGATTTCTCAGAGTTTACTGCTATGATGAAGAAAGGAGATGGTGTTGGGAG 1449
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1380 TGGGAGGATTGATTTCTCAGAGTTTACTGCGATGATGAAGAAAGGAGATGGTGTTGGTAG 1439
Query 1450 GAGCAGAACTATGAGGAACAACTTGAACTTCAATATAGCTGAAGCTTTTGGAGTTGAGGA 1509
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1440 GAGCAGAACTATGAGGAACAACTTGAACTTCAATATAGCCGAGGCTTTTGGTGTTGAGGA 1499
Query 1510 CACAAGCAGC-ACTGCTAAATCTGATGATTCACCAAAGTAATTATAATCATCTATATA-- 1566
||| |||| | ||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 1500 CACCAGCA-CTACTGCTAAATCTGATGACTCACCACACTAATTATAATCATCTATATATA 1558
Query 1567 CTTGGAATTGAGAAATGAGAACTCACAAAAGAAAAACTGAATCTTTC------CT-TTTT 1619
||||||| | |||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 1559 CTTGGAACTAAGAAATGAGAACCCACAAAAGAAAAACTGAATCTTTCTTTTATCTCTTTT 1618
Query 1620 -GTTTTCGTTTCCACTTTT-GTAGATGAGCAACTTTCTCAATTTTGTTATAAGCATGGAT 1677
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1619 TGTTTTCGTTTCCACTTTTTGTAGATGAGCAACTTTCTCAATTTTGTTATA-GCATGGAT 1677
Query 1678 AATTTT-GCTTCATATTTTCTGC 1699
|||||| ||||||||||||||||
Sbjct 1678 AATTTTTGCTTCATATTTTCTGC 1700
> Ahg913433 jgi|Araly1|913433|Al_scaffold_0001_3687
Length=1488
Score = 1779 bits (963), Expect = 0.0
Identities = 1300/1465 (89%), Gaps = 14/1465 (1%)
Strand=Plus/Plus
Query 49 GAAACCAAACCCTAGAAGACCCTCAAACAGTGTTCTTCCATA-CGAAACACCAAGATTAA 107
|||||||||||||||| | || ||||||| ||||||||||| | |||||||| |||||
Sbjct 9 GAAACCAAACCCTAGACGTCCTTCAAACACAGTTCTTCCATATC-AAACACCACGATTAC 67
Query 108 GAGATCACTATCTCCTCGGCAAAAAGCTAGGCCAAGGCCAATTTGGAACAACCTATCTCT 167
||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 68 GAGATCATTACCTTCTCGGCAAAAAGCTAGGCCAAGGCCAATTCGGAACAACCTATCTCT 127
Query 168 GTACAGAGAAATCATCATCAGCTAATTACGCTTGCAAATCAATCCCAAAACGTAAGCTTG 227
| |||||||||||| | || ||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 128 GCACAGAGAAATCAACCTCCGCTAATTACGCCTGCAAATCAATCCCCAAACGCAAGCTCG 187
Query 228 TATGTCGTGAAGACTACGAAGATGTATGGCGTGAGATTCAGATCATGCATCATCTCTCTG 287
| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTTGTCGCGAGGATTACGAAGATGTATGGCGTGAGATTCAGATCATGCATCATCTCTCTG 247
Query 288 AGCATCCTAATGTTGTTAGAATCAAGGGTACTTATGAAGACTCTGTTTTTGTTCACATTG 347
||||||||||||||||| | |||||||| |||||||| || || ||||||||||| ||||
Sbjct 248 AGCATCCTAATGTTGTTCGGATCAAGGGGACTTATGAGGATTCGGTTTTTGTTCATATTG 307
Query 348 TTATGGAAGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAGGGTG-TTTT 406
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 308 TTATGGAGGTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTTCTAAAGG-TCATTTT 366
Query 407 AGTGAACGTGAAGCTGCT-AAG-TTGATTAAGACTATTCTTGGTGTTGTTGAGGCTTGTC 464
||||| ||||| |||| | ||| || |||||||| |||||||||||||||||||||||||
Sbjct 367 AGTGAGCGTGAGGCTG-TGAAGCTT-ATTAAGACGATTCTTGGTGTTGTTGAGGCTTGTC 424
Query 465 ATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATAGTCCCA 524
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 425 ATTCTCTTGGTGTTATGCATAGAGATCTCAAACCTGAGAATTTCTTGTTTGATAGTCCTA 484
Query 525 -GTGATGATGCTAAGCTTAAAGCTACAGACTTTGGTTTGTCTGTCTTCTACAAGCCAGGG 583
| || ||||| || || |||||||| || |||||||||||||||||||| ||||||||
Sbjct 485 AG-GAAGATGCGAAACTCAAAGCTACCGATTTTGGTTTGTCTGTCTTCTATAAGCCAGGA 543
Query 584 CAGTATCTGTATGATGTAGTTGGAAGTCCGTATTATGTTGCACCTGAGGTTCTGAAGAAA 643
|| ||| | |||||||| ||||||||||| || ||||||||||| ||||| || ||||||
Sbjct 544 CAATATTTATATGATGTGGTTGGAAGTCCATACTATGTTGCACCAGAGGTGCTAAAGAAA 603
Query 644 TGTTATGGACCAGAGATAGACGTGTGGAGCGCCGGTGTTATCTTGTACATCTTACTAAGT 703
||||||||||| || ||||| |||||||| |||||||||||| | ||||||||||| ||
Sbjct 604 TGTTATGGACCTGAAATAGATGTGTGGAGTGCCGGTGTTATCCTCTACATCTTACTCAGC 663
Query 704 GGGGTTCCTCCTTTTTGGGCAGAAACCGAGTCAGGAATCTTTAGGCAGATATTGCAAGGG 763
|| |||||||| || |||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 664 GGTGTTCCTCCCTTCTGGGCAGAGACCGAGTCTGGAATCTTTAGACAGATATTGCAAGGG 723
Query 764 AAGATAGATTTTAAATCTGATCCGTGGCCTACTATCTCAGAAGGTGCTAAAGATTTGATT 823
||| ||||||| |||||||| || ||||||| ||||||||||| |||||||||||||||
Sbjct 724 AAGTTAGATTTCAAATCTGACCCATGGCCTAGTATCTCAGAAGCTGCTAAAGATTTGATC 783
Query 824 TACAAAATGCTCGATAGGAGCCCCAAGAAACGTATTTCTGCACATGAAGCATTGTGTCAC 883
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 784 TACAAAATGCTCGAAAGGAGCCCCAAGAAACGCATTTCTGCACATGAAGCCTTGTGTCAC 843
Query 884 CCTTGGATTGTTGATGAACATGCTGCACCAGACAAGCCTCTCGACCCAGCAGTCTTGTCG 943
|| |||||||| |||||||| || ||||||||||||||||| || ||||||||||| ||
Sbjct 844 CCATGGATTGTCGATGAACAAGCAGCACCAGACAAGCCTCTTGATCCAGCAGTCTTATCA 903
Query 944 CGACTTAAGCAGTTCTCGCAAATGAATAAAATCAAGAAAATGGCCTTACGAGTAATCGCG 1003
||||| |||||||| || ||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 904 CGACTAAAGCAGTTTTCTCAAATGAATAAGATTAAGAAAATGGCCTTACGGGTAATTGCT 963
Query 1004 GAGAGACTCTCGGAGGAAGAGATTGGTGGTCTGAAGGAATTGTTCAAAATGATAGATACA 1063
|||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct 964 GAGAGACTTTCAGAGGAAGAAATTGGAGGTCTAAAGGAATTGTTCAAGATGATAGACACA 1023
Query 1064 GACAACAGTGGAACAATCACCTTTGAAGAGCTTAAAGCAGGTCTAAAGAGAGTTGGATCT 1123
||||||||||| || || || ||||||||||| ||||| ||| | |||||||| ||||||
Sbjct 1024 GACAACAGTGGCACGATAACTTTTGAAGAGCTCAAAGCGGGTTTGAAGAGAGTCGGATCT 1083
Query 1124 GAATTGATGGAATCAGAAATCAAGTCTCTTATGGATGCGGCGGATATAGACAACAGTGGG 1183
||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1084 GAACTGATGGAATCAGAAATCAAGTCTCTTATGGATGCGGCTGATATCGACAACAGTGGT 1143
Query 1184 ACAATAGACTACGGTGAATTCCTAGCAGCGACATTACATATAAACAAGATGGAGAGAGAA 1243
|||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1144 ACAATAGACTACGGAGAATTCCTAGCAGCAACATTACACATGAACAAGATGGAGAGAGAG 1203
Query 1244 GAGAA-CTTGGTGGTTGCGTTTTCATACTTTGATAAAGATGGTAGCGGTTATATCACCAT 1302
||||| || ||||| ||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 1204 GAGAATCT-GGTGGCTGCATTTTCATACTTTGACAAAGACGGAAGCGGTTATATCACCAT 1262
Query 1303 TGACGAGCTTCAA-CAAGCCTGCACAGAGTTTGGTCTCTGTGACACTCCTCTTGATGACA 1361
|| ||||| || || || ||||||||||||||||| ||||| || ||||| || ||||
Sbjct 1263 CGATGAGCTCCAGTCA-GCTTGCACAGAGTTTGGTCTATGTGATACACCTCTGGACGACA 1321
Query 1362 TGATCAAAGAGATTGATCTTGATAATGACGGGAAGATTGATTTCTCAGAGTTTACTGCTA 1421
||||||| |||||||||||||| |||||||||||||| |||||||| || ||||| || |
Sbjct 1322 TGATCAAGGAGATTGATCTTGACAATGACGGGAAGATCGATTTCTCGGAATTTACGGCAA 1381
Query 1422 TGATGAAGAAAGGAGATGGTGTTGGGAGGAGCAGAACTATGAGGAACAACTTGAACTTCA 1481
|||||| |||||||||||| |||||||| |||||||| |||| ||| |||||||||||||
Sbjct 1382 TGATGAGGAAAGGAGATGGAGTTGGGAGAAGCAGAACCATGATGAAAAACTTGAACTTCA 1441
Query 1482 ATATAGCTGAAGCTTTTGGAGTTGA 1506
| || ||||| ||||||||||||||
Sbjct 1442 ACATTGCTGATGCTTTTGGAGTTGA 1466
> Ahg941887 jgi|Araly1|941887|scaffold_602431.1
Length=1510
Score = 429 bits (232), Expect = 3e-119
Identities = 805/1076 (75%), Gaps = 62/1076 (6%)
Strand=Plus/Plus
Query 345 TTGTTATGGAAG-TTTGTGAAGGTGGTGAGCTT-TTTGATCGGATTGTTTCTAAAGGGT- 401
|||| |||| || | ||||||||||||||| || |||||| | ||||| | | |||
Sbjct 313 TTGTGATGG-AGCTCTGTGAAGGTGGTGAG-TTGTTTGATAGAATTGTGAAGACA-GGTC 369
Query 402 GTTTTAGTGA-ACGTGAAGCTGCTAAG-TTGATTAAGACTATTCTTGGTGTTGTTGAGGC 459
|| ||||| | | |||||||| ||| || |||||||| ||| |||| || ||||||||
Sbjct 370 ATTACAGTGAGA-GAGAAGCTGCGAAGCTT-ATTAAGACCATTGTTGGGGTCGTTGAGGC 427
Query 460 TTGTCATTCTCTTGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGATAG 519
|||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |
Sbjct 428 TTGTCACTCTCTTGGTGTTGTTCATAGAGATCTTAAGCCTGAGAATTTCTTGTTTGCTTC 487
Query 520 TCCCAG-TGATGATGCTAAGCTTAAAGCTACAGACTTTGGTTTGTCTGTCTTCTACAAGC 578
| | ||| |||||| |||||| |||| |||||||| | ||||| |||| ||| |
Sbjct 488 TTGT-GCTGAAGATGCTTCTCTTAAATCTACCGACTTTGGCCTCTCTGTTTTCTGCAAAC 546
Query 579 CAGG-GCAGTATCTGTATGATGTAGTTGGAAGT-CCGTATTATGTTGCACCTGAGGTTCT 636
|||| | || || | | || | ||||| ||| || || ||||| |||||||||||| |
Sbjct 547 CAGGCGAAGCATTT-TCGGAACTCGTTGGTAGTGCC-TACTATGTGGCACCTGAGGTTTT 604
Query 637 GA-AGAAATGTTATGGACCAGAGATA-GACGTGTGGAGCGCCGGTGTTATCTTGTACAT- 693
| | || |||||| || || || ||||| |||||||| || |||||| | |||||
Sbjct 605 -ACATAAGCATTATGGCCCTGA-ATGTGACGTATGGAGCGCTGGAGTTATCCTCTACATT 662
Query 694 CTTACTAAGTGGGGTTCCTCCTTTTTGGGCAGAAACCGAG-TCAGGAATCTTTAGGCAGA 752
|| ||| |||| |||||||||| ||||| || | || | || ||||| || |||
Sbjct 663 CTC-CTATGTGGTTTTCCTCCTTTCTGGGCTGAGAGTGAAATT-GGCATCTTCAGAAAGA 720
Query 753 TATTGCAAGGGAA-GATAGATTTTAA-ATCTGATCCGTGGCCTACTATCTCAGA-AGGTG 809
| || || ||||| | | || ||| | ||| |||| |||||||| || ||||| || ||
Sbjct 721 TTTTACA-GGGAAAGCTGGAGTTTGAGATCA-ATCCTTGGCCTACCATTTCAGAGAG-TG 777
Query 810 CTAAAGAT-TTGATTTACAAAATGCTCGATAGGAGCCCCAAGAA-ACG-TATTTCTGCAC 866
| |||||| || || | ||||||||||| || | || || || | | || |||| |
Sbjct 778 CCAAAGATCTT-ATAAAGAAAATGCTCGAAAGCAATCCAAAAAAGAGGCTAA--CTGCTC 834
Query 867 ATGAAGCATTGTGTCACCCTTGGATTGTTGATGA-ACATGCTGCACCAGACAAGCCTCTC 925
|| ||| ||||||||||| |||||||| ||||| | | | ||| ||||| || ||| |
Sbjct 835 ATCAAGTGTTGTGTCACCCGTGGATTGTGGATGATA-AGGTTGCTCCAGATAAACCTTTG 893
Query 926 GACC-CAGCAGTCTTGTCGCGACTTAAGCAGTTCTC-GCAAATGAATAAAATCAAGAAAA 983
||| | ||||| |||| || || || ||||||| || | |||| ||| | ||||| |
Sbjct 894 GACTGC-GCAGTAGTGTCCCGTCTGAAAAAGTTCTCTGCGA-TGAACAAACTTAAGAAGA 951
Query 984 TGGCCTTACGAGTAATCGCGGAGAGACTCTCGGAGGAAGAGATTGGTGGTCTGAAGGAAT 1043
|||| || || || || || |||||||| || |||||||| || ||||| || || |||
Sbjct 952 TGGCTTTGCGGGTGATTGCAGAGAGACTATCTGAGGAAGAAATCGGTGGGCTCAAAGAAC 1011
Query 1044 TGTTCAAAATGATAGATACAGACAACAGTGGAACAATCACCTTTGAAGAGCTTAAA-G-C 1101
|||||||||||||||| ||||| || || || || || || ||||||||| ||||| | |
Sbjct 1012 TGTTCAAAATGATAGACACAGATAAAAGCGGGACCATTACATTTGAAGAG-TTAAAAGAC 1070
Query 1102 AGGTCTAAAGA-GAGTTGGATCTGAA-TTGATGGAATCAGAAATC-AAGT-CTCTTATGG 1157
|| | | | || | ||||| || || || ||||||||||| ||| ||| ||||| |
Sbjct 1071 AG-TATGA-GACGTGTTGGGTCAGAGCTT-ATGGAATCAGAGATCCAAGAACTCTTGCG- 1126
Query 1158 ATGCGGCGGATATAGAC-AACAGTGGGACAATAGACTACGGTGAATTCCTAGCAGCGACA 1216
||| || ||| | || || ||||| ||||| ||||| || || ||| |||| || |||
Sbjct 1127 -TGCCGCTGATGTTGATGAA-AGTGGAACAATTGACTATGGAGAGTTCTTAGCTGCAACA 1184
Query 1217 TTACA-TATAAACAAGATGGAGAGAGAAGAGAA-CTTGGTGGTTGCGTTTTCATACTTTG 1274
| || | | |||||| |||||||||| ||||| || | | | ||| || || | |||||
Sbjct 1185 ATCCACT-TGAACAAGCTGGAGAGAGAGGAGAATCTAG-TAGCTGCATTCTCTTTCTTTG 1242
Query 1275 ATAAAGATGGTAGCGGTTATATCACCATTGACGAGCTTCAACAAGCCTGCACAG-AGTTT 1333
| ||||||| || ||||| || || || |||||||||||||| || || | || |||||
Sbjct 1243 ACAAAGATGCAAGTGGTTACATTACTATCGACGAGCTTCAACAGGCATGGA-AGGAGTTT 1301
Query 1334 GGTCTCTGTGACACTCCTCTTGATGACATGATCAAAGAGATTGATCTTGATAATGA 1389
||| | || | ||||||||| ||||||||||| ||||||| || |||||
Sbjct 1302 GGTATAAAAGATTCAAATCTTGATGAAATGATCAAAGACATTGATCAAGACAATGA 1357
> Ahg345668 jgi|Araly1|345668|fgenesh1_pg.C_scaffold_4002010
Length=1761
Score = 331 bits (179), Expect = 9e-90
Identities = 829/1128 (73%), Gaps = 104/1128 (9%)
Strand=Plus/Plus
Query 260 GAGATTCAGATCATGCATCATCTCTCTGAG-CATCCTAATGTTG-TT-AGAATCAAG--G 314
||||||||||| ||||||||| | |||| | ||||| || | || || || || || |
Sbjct 553 GAGATTCAGATAATGCATCATTTGTCTG-GTCATCCAAACG-TGATTCAG-AT--AGTTG 607
Query 315 GTACTTATGAAGACT-CTGTTTTTGTTCACATTGTTATGGAAG-TTTGTGAAGGTGGTGA 372
|| | |||||||| | | || |||||| |||| |||| || |||||| |||||| ||
Sbjct 608 GTGCGTATGAAGA-TGCAGTAGCTGTTCATGTTGTGATGG-AGATTTGTGCAGGTGGAGA 665
Query 373 GCTT-TTTGATCGGATTGTTTCTA-A-AGGGTGTTTTAGTGA-ACGTGAAGCTGCTAAG- 427
| || |||||| ||||| | | | | ||| || || ||| | |||||||| ||
Sbjct 666 G-TTATTTGATAGGATT-ATAC-AGAGAGGACATTATACTGAGA-AAAAAGCTGCTGAGC 721
Query 428 TTGATTAAGACT-ATTCTTGGTGTTGTTGAGGCTTGTCATTCTCTT-GGTGTTATGCATA 485
||| || || | ||| |||||||| | || |||||||||||| || ||||| |||||
Sbjct 722 TTG-CTAGGA-TCATTGTTGGTGTTATAGAAGCTTGTCATTCT-TTAGGTGTGATGCACC 778
Query 486 GAGATCTTAAGCCTGAGAATTTCTTGTTTGATAGTCCCAG-TGATGATGCTAAGCT-TAA 543
| |||||||||||||||||||||||||||| |||| || ||| || ||| ||| | |
Sbjct 779 GTGATCTTAAGCCTGAGAATTTCTTGTTTGTTAGTGG-AGATGAAGAAGCT--GCTCTCA 835
Query 544 AG-CTACAGACTTTGGTTTGTCTGTCTTCTACAAGCCAGG-GCAGTATCTGTA-TGATGT 600
|| ||| || |||||| | |||||||||| || ||||| | | || | | ||||||
Sbjct 836 AGACTATTGATTTTGGTCTCTCTGTCTTCTTTAAACCAGGAGAAACAT-TC-ACTGATGT 893
Query 601 AGTTGGAAGTCCGTATTATGTTGCACCTGAGGTTCTGAAG-AAATGTTATGGACCA-GAG 658
|||||| ||||| |||||||| ||||| || ||| | ||| ||| |||| | | | ||
Sbjct 894 AGTTGGGAGTCCTTATTATGTGGCACCAGAAGTTTT-AAGGAAACATTATAGTC-ATGA- 950
Query 659 ATA-GACGTGTGGAGCGCCGGTGTTATCT-TGTACATCTTACTAAGTGGGGTTCCTCCTT 716
|| || || ||||| || || ||||| | | ||||| ||||||||||| |||||||| |
Sbjct 951 ATGTGATGTTTGGAGTGCTGGAGTTAT-TATATACATTTTACTAAGTGGTGTTCCTCCGT 1009
Query 717 TTTGGGCA-GAAACCGAGTCAGGA-ATCTTT-AGGCAGATATTGCAAGG-GAAGATAGAT 772
|||||| | ||||| || |||| |||||| || ||| | ||| |||| || | |||
Sbjct 1010 TTTGGG-ATGAAACGGAA-CAGGGGATCTTTGAG-CAGGTTTTGAAAGGTGACCTT-GAT 1065
Query 773 TTTAAATCTGATCCGTGGCCTACTATCTCAGAAGGTGCTAAAGATTTGATT--TACAAAA 830
|||| ||| || || ||||||| | | |||||| |||||||||||||| | | | |
Sbjct 1066 TTTATATCAGAACCATGGCCTAGTGTATCAGAAAGTGCTAAAGATTTGGTCCGT-CGGA- 1123
Query 831 TGCTCGAT-AGGAGCCCC-AAGAAACGTATTTCTGCACATGAAGCAT-TGTGTCACCCTT 887
|||| || || || ||| ||||| || || |||| ||||||| | | ||||| ||||
Sbjct 1124 TGCTA-ATCAG-AGACCCTAAGAAGCGAATGACTGCTCATGAAGT-TCTCTGTCATCCTT 1180
Query 888 GG---ATTGTTGATGAACATGCTGCACCAGACAAGCCTCTCGACCCAGCAGTC-TT-GTC 942
|| | || |||| || ||| | || || ||||| || | || ||| || |||
Sbjct 1181 GGGCCAGAGTAGATGG---TGTTGCTCTTGATAAACCTCTTGATTCTGCTGTCCTTAGTC 1237
Query 943 GC--GACTTAAGCAGTTCTC-GCAAATGAATAAAATCAAGAAAATGGCCT-TACGAG-TA 997
| | | || ||||| || || | |||| || |||||||||| || | | | || ||
Sbjct 1238 GTTTG-C--AA-CAGTTTTCAGCCA-TGAACAAGCTCAAGAAAATTGC-TAT-CAAGGTA 1290
Query 998 ATCGCGGAGAGACTC-TCGGAGGAAGAGATTGGTGG-TCTGAAGGAATTGTTCAAAATGA 1055
|| || ||||| || || ||||||||||| | || | |||||||| ||||||| ||||
Sbjct 1291 ATAGCAGAGAG-CTTGTCAGAGGAAGAGATAGCAGGAT-TGAAGGAAATGTTCAAGATGA 1348
Query 1056 TAGATACAGACAACAGTGGA-ACAATCAC-CTTTGAAGAGCTTAAAGCA-GGTCTAAAGA 1112
||||||||||||| |||||| ||| |||| || ||||| || || | | ||| || | |
Sbjct 1349 TAGATACAGACAATAGTGGACACA-TCACTCTA-GAAGAACTCAA-GAAAGGTTTAGACA 1405
Query 1113 GAGTTGGAT-CTGAA-TTGATGGAATCAGAAATCA--AGTCTCTTATGGATGCGGCGGAT 1168
||||||| | |||| || | | | |||||||| | || | | ||| | || ||||||
Sbjct 1406 GAGTTGG-TGCTGACCTTAAAG-ATTCAGAAAT-ATTAGGAT-TAATGCAGGCAGCGGAT 1461
Query 1169 ATAGACAACAGTGGGACAATAGACTACGGTGAATTCCTAGCAGCGACATTACATATAAAC 1228
||||| ||||||||||| |||||||| || || || ||||||||| | ||| | |||
Sbjct 1462 ATAGATAACAGTGGGACTATAGACTATGGAGAGTTTATAGCAGCGATGGTGCATTTGAAC 1521
Query 1229 AAGATGGAGAGAGAAGAGAACTTGGTGGTTGCGTTTTCATACTTTGATAAAGATGGTAGC 1288
|| || |||| |||||| | ||| | || || || || ||||| ||||||| ||
Sbjct 1522 AAAATAGAGAAAGAAGACCATTTGTTCACAGCATTCTCTTATTTTGACCAAGATGGAAGT 1581
Query 1289 GGTTATATCACCATTGACGAGCTTCAACAAGCCTGCACAG-AGTTTGG 1335
|||||||| |||| |||||||| |||||||| |||| || | |||||
Sbjct 1582 GGTTATATAACCAGAGACGAGCTCCAACAAGCTTGCA-AGCAATTTGG 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5