BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09580.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489810 jgi|Araly1|489810|fgenesh2_kg.6__2944__AT4G09580.1 1731 0.0
> Ahg489810 jgi|Araly1|489810|fgenesh2_kg.6__2944__AT4G09580.1
Length=1252
Score = 1731 bits (937), Expect = 0.0
Identities = 1117/1199 (93%), Gaps = 31/1199 (3%)
Strand=Plus/Plus
Query 111 TGACGGTGGAGCAAGACAGCTAGTAAAAGACGAAGAAAGCCCCGCAGCTTCATCGGCAGC 170
|||||| |||| ||||||||| |||||||||||||||||| |||| || || ||||||||
Sbjct 76 TGACGGCGGAGGAAGACAGCTCGTAAAAGACGAAGAAAGCGCCGCCGCGTCGTCGGCAGC 135
Query 171 TAAAGGACTCTTAAACGATGACTCACCGACTGGTAAACGAACCAAATCGGAGAGATTTCC 230
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 136 TAAAGGACTCTTAAACGATGATTCACCGACGGGTAAACGAACCAAATCGGAGAGATTTCC 195
Query 231 TCTCTCACGGTGGGAATTCGCCGTGTTTTTCACCGTCTTTCTCGTTTTCACCACCGGACT 290
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 196 TCTCCCACGGTGGGAATTCGCCGTGTTTTTCACCGTCTTCCTTGTTTTCACCACCGGACT 255
Query 291 CTTT-TGTATTTACCTCACCATGCCTGCCGCTGAATACGGCAAGCTCAAAGTTCCTAGAA 349
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 256 -TTTGTGTATTTACCTCACCATGCCTGCCGCTGAATACGGCAAGCTTAAAGTTCCTAGAA 314
Query 350 CTATCTCCGATCTTCGATTGCTCAAAGAGAATCTTGGGTCTTATGCAAGTGAGTACCAAG 409
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 315 CTATCTCCGATCTTCGATTGCTTAAAGAGAATCTTGGGTCTTATGCAAGTGAGTACCAAG 374
Query 410 CACGGTTCATTTTAGGTTACTGTTCGACGTATATCTTTATGCAGACATTTATGATACCTG 469
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 375 CACGGTTCATTTTAGGTTACTGTTCGACGTATATCTTTATGCAGACCTTTATGATACCTG 434
Query 470 GAACGATCTTTATGTCATTGCTTGCTGGAGCTCTTTTCGGTGTGGTTAGAGGTTTTGTTC 529
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 435 GAACAATCTTTATGTCATTGCTTGCTGGAGCTCTTTTCGGTGTGGTTAGAGGTTTTGTCC 494
Query 530 TTGTTGTCCTTAATGCAACTGCTGGAGCATGTTCTTGCTTCTTCTTATCGAAATTGGTCG 589
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 495 TTGTTGTTCTCAATGCAACAGCTGGAGCATGTTCTTGTTTCTTCTTATCGAAATTGGTCG 554
Query 590 GTAGGCCATTGGTTAACTGGTTATGGCCTGAAAAGTTGAGGTTTTTCCAAGCTGAGATTG 649
| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 555 GAAGGCCTTTGGTTAACTGGTTATGGCCAGAAAAGTTGAGGTTTTTCCAGGCAGAGATTG 614
Query 650 CGAAAAGAAGAGATAGGCTGCTAAACTACATGCTGTTCTTAAGGATAACACCAACACTTC 709
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 615 CGAAAAGAAGAGATAGGCTGCTAAACTACATGTTGTTCTTAAGGATAACACCAACGCTTC 674
Query 710 CAAACCTCTTTATCAATTTGTCTTCTCCAATCGTTGACATACCCTTTCACGTCTTCTTTT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CAAACCTCTTTATCAATTTGTCTTCTCCAATCGTTGACATACCCTTTCACGTCTTCTTTT 734
Query 770 TGGCGACTCTAGTCGGTCTTATGCCAGCTTCGTACATCACAGTTAGAGCTGGTTTGGCTC 829
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 735 TGGCGACTCTAGTCGGCCTTATGCCAGCTTCGTACATCACCGTTAGAGCTGGTTTGGCTC 794
Query 830 TTGGAGATCTCAGATCAGTAAAGGATTTGTATGATTTCAAGACCTTGTCAGTGCTGTTCC 889
|||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct 795 TTGGAGATCTCAGATCAGTAAAGGATCTGTATGATTTTAAGACTTTGTCCGTGCTATTCC 854
Query 890 TCATTGGATCCATCTCCATATTCCCTGCCCTTCTAAAGAGAAAGAGAGTATATGAATGAA 949
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 855 TCATTGGATCCATCTCCATATTCCCTGCCCTCCTAAAGAGAAAGAGAGTATATGAATGAA 914
Query 950 GAGTCGAAGACTGAAGAGTATAATCATTTATATAGATATTGATGAGCAGCACCTTTCAGT 1009
|| || | | || | |||||||||||||||||||||||||||||||||||||
Sbjct 915 GA--CG-----T-A----TA-A-TCATTTATATAGATATTGATGAGCAGCACCTTTCAGT 960
Query 1010 CGCATGGCAGCATTTCAAAGGTGTTTATGAGCTCAAGATAAAAGAAGAAGATTGTTTCTG 1069
|||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 961 CGCATGGCGGGATTTTAAAGGTGTTTATGAGCTCAAGATAAA-GAAGAAGATTGTTTCTG 1019
Query 1070 CAACATCGCGGAGCTTAAAATCGCTAACTCTGGCTTTGATTTGTTTATTGTCTTCGATTT 1129
|||||| |||||||||||| |||||||||||||||||||| |||||||||| || |||
Sbjct 1020 AAACATCACGGAGCTTAAAACCGCTAACTCTGGCTTTGATTGGTTTATTGTCGTCAATTC 1079
Query 1130 GAGAGCTTCTCTTACCCCCTTGTAGTAGTAAGTGTTTGTGTAGCTAGTTTACTGAATC-- 1187
|||||||||||| | ||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1080 GAGAGCTTCTCTCATTCCCTTGTAGTA--A-GTGTTTGTCTAGCTAGTTTACTGAATCTT 1136
Query 1188 -AT----GATTGGCTTTGTATATTGAATACTTGATTCAGAGATCTGACTCTGCAGCCTAT 1242
|| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1137 GATACACGATTGGCTTTGTATATTGAAT-CTTGATTCCGAGATCTGACTCTGCAGCCTAT 1195
Query 1243 TGGCTTATGTATAACAAA-CATGATTATGTAAATGCTTGAAGACATTGCTTTGACCAAA 1300
||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGGCTTATGTA-A-CAAAACATGATTATGTAAATGCTTGAAGACATTGCTTTGACCAAA 1252
Score = 95.3 bits (51), Expect = 1e-18
Identities = 72/81 (89%), Gaps = 6/81 (7%)
Strand=Plus/Plus
Query 51 TGGGTTTTCTTGAGAAAGCATTACAGACACAGTAATGGCGGCTCCTCGGAATTTAACAGG 110
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TGGGTTTTCTTGTGAAAGCATT------ACAGTAATGGCGGCTCCTCGGAATTTAACAGG 54
Query 111 TGACGGTGGAGCAAGACAGCT 131
|||||| |||| |||||||||
Sbjct 55 TGACGGCGGAGGAAGACAGCT 75
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5