BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09600.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489814 jgi|Araly1|489814|fgenesh2_kg.6__2948__AT4G09600.1 534 2e-151
Ahg327144 jgi|Araly1|327144|fgenesh1_pm.C_scaffold_6002364 350 9e-96
> Ahg489814 jgi|Araly1|489814|fgenesh2_kg.6__2948__AT4G09600.1
Length=529
Score = 534 bits (289), Expect = 2e-151
Identities = 393/442 (89%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 1 AGAGGTGTTAGATTTATATACTTAATTGTAGCTACTAAATAGAGAATCAGAGAGAATAGT 60
||| ||||||||||||||||||||| | ||| ||| | ||||| | |||||||||
Sbjct 1 AGAAGTGTTAGATTTATATACTTAA----A--TACCAAA-ACAGAATTACAGAGAATAG- 52
Query 61 TTTATATC-TTGCACGAAACTGCATGCTTTTTGAGACATGGCAATCTTCCGAAGTACACT 119
|||||| | ||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 53 TTTATA-CACTGCACGAAACTGCATACTTTTTCAGACATGGCAATCTTCCGAAGTAAACT 111
Query 120 AG-TTTTACTGCTGATCCTCTTCTGCCTCACCACTTTTGAGCTTCATGTTCATGCTGCTG 178
| |||| || | ||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 112 -GTTTTTTTTGTTAATCCTGTTCTGTCTCACCACTTATGAGCTTCATGTTCATGCTGCTG 170
Query 179 AAGATTCACAAGTCGGTGAAGGCGTAGTGAAAATTGATTGCGGTGGGAGATGCAAAGGTA 238
||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 171 AAGCTACACAGGTCGGTGAAGGCGTAGTGAAAATTGATTGTGGTGGGAGATGCAAAGGTA 230
Query 239 GATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGTTGTTACC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGTTGTTACC 290
Query 299 GCTGCAACTGTGTGCCACCAGGCACCGCCGGGAACCACCACCTTTGTCCTTGCTACGCCT 358
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 291 GCTGCAACTGTGTGCCACCTGGTACTGCCGGAAACCACCACCTTTGTCCTTGCTACGCCT 350
Query 359 CCATTACCACTCGTGGTGGCCGTCTCAAGTGCCCTTAAACATATACACATACAGATGTGT 418
||||||| |||| |||||||| |||||||||||||||| ||||| | | | ||||||||
Sbjct 351 CCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTAAATATATATATACAAAGATGTGT 410
Query 419 GTATATGTCTTCCGCGAGCACA 440
||| ||||| ||||||| |||
Sbjct 411 ATATGTGTCTCCCGCGAGGACA 432
> Ahg327144 jgi|Araly1|327144|fgenesh1_pm.C_scaffold_6002364
Length=300
Score = 350 bits (189), Expect = 9e-96
Identities = 266/303 (88%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 97 ATGGCAATCTTCCGAAGTACACTAGTTTTACTGCTGATCCTCTTCTGCCTCACCACTTTT 156
||||||||||| ||||| ||||| ||| | | || ||||||||||| || ||||||| |
Sbjct 1 ATGGCAATCTTACGAAGGACACTGGTTCTGTTACTTATCCTCTTCTGTCTTACCACTTAT 60
Query 157 GAGCTTCATGTTCATGCTGCTGAAGATTCACAA-GTCGGTGAAGGCGTAGTGAAAATTGA 215
|||||||| ||||| |||||||| || || || ||||||||||||||||||||||||||
Sbjct 61 GAGCTTCACGTTCACGCTGCTGATGACGCA-AAGGTCGGTGAAGGCGTAGTGAAAATTGA 119
Query 216 TTGCGGTGGGAGATGCAAAGGTAGATGCAGCAAATCGTCGAG-GCCAAATCTGTGTTTGA 274
||| |||||||||||||||||||||||||||||||| ||||| | ||| ||||| ||||
Sbjct 120 TTGTGGTGGGAGATGCAAAGGTAGATGCAGCAAATCTTCGAGAACGAAA-CTGTGCTTGA 178
Query 275 GAGCATGCAACAGCTGTTGTTA-CCGCTGCAACTGTGTGCCACCAGGCACCGCCGGGAAC 333
|||| |||||||||||||| || ||| ||||||||||||||||| || || ||||| |||
Sbjct 179 GAGCGTGCAACAGCTGTTG-TACCCGATGCAACTGTGTGCCACCTGGTACTGCCGGAAAC 237
Query 334 CACCACCTTTGTCCTTGCTACGCCTCCATTACCACTCGTGGTGGCCGTCTCAAGTGCCCT 393
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 238 CACCACCTTTGTCCTTGCTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCT 297
Query 394 TAA 396
|||
Sbjct 298 TAA 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5