BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09610.1
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327144 jgi|Araly1|327144|fgenesh1_pm.C_scaffold_6002364 438 2e-122
Ahg489814 jgi|Araly1|489814|fgenesh2_kg.6__2948__AT4G09600.1 383 8e-106
> Ahg327144 jgi|Araly1|327144|fgenesh1_pm.C_scaffold_6002364
Length=300
Score = 438 bits (237), Expect = 2e-122
Identities = 280/301 (93%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 73 ATGGCAGTCTTCCGAAGTACACTGGTTCTGTTACTAATCATCGTCTGTCTCACCACTTAT 132
|||||| |||| ||||| ||||||||||||||||| ||| || ||||||| |||||||||
Sbjct 1 ATGGCAATCTTACGAAGGACACTGGTTCTGTTACTTATCCTCTTCTGTCTTACCACTTAT 60
Query 133 GAGCTTCACGTCCACGCTGCTGATGGTGCAAAGGTCGGTGAAGGCGTAGTGAAAATCGAT 192
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 GAGCTTCACGTTCACGCTGCTGATGACGCAAAGGTCGGTGAAGGCGTAGTGAAAATTGAT 120
Query 193 TGTGGTGGGAGATGCAAAGATAGATGCAGCAAATCTTCGAGAACGAAGCTATGCTTGAGA 252
||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 121 TGTGGTGGGAGATGCAAAGGTAGATGCAGCAAATCTTCGAGAACGAAACTGTGCTTGAGA 180
Query 253 GCGTGCAACAGCTGTTGTTCCCGCTGCAACTGTGTGCCACCTGGTACTTCTGGAAA-CAC 311
|||||||||||||||||| |||| |||||||||||||||||||||||| | ||||| ||
Sbjct 181 GCGTGCAACAGCTGTTGTACCCGATGCAACTGTGTGCCACCTGGTACTGCCGGAAACCA- 239
Query 312 CCACCTTTGTCCTTGCTACGCCTCCATTACCACTCACGGTGGCCGCCTCAAGTGCCCTTA 371
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CCACCTTTGTCCTTGCTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTA 299
Query 372 A 372
|
Sbjct 300 A 300
> Ahg489814 jgi|Araly1|489814|fgenesh2_kg.6__2948__AT4G09600.1
Length=529
Score = 383 bits (207), Expect = 8e-106
Identities = 303/348 (87%), Gaps = 12/348 (3%)
Strand=Plus/Plus
Query 32 AATATTTTGTACAACT-CACAGAAATTGCATGA--GTTTCGA-ACATGGCAGTCTTCCGA 87
|||| ||| ||| ||| ||| |||| ||||| | |||| | |||||||| ||||||||
Sbjct 48 AATAGTTTATAC-ACTGCAC-GAAACTGCAT-ACTTTTTC-AGACATGGCAATCTTCCGA 103
Query 88 AGTACACTGGTTCTGTTACTAATCATCG-TCTGTCTCACCACTTATGAGCTTCACGTCCA 146
|||| |||| || | || ||||| | | ||||||||||||||||||||||||| || ||
Sbjct 104 AGTAAACTGTTTTTTTTGTTAATCCT-GTTCTGTCTCACCACTTATGAGCTTCATGTTCA 162
Query 147 CGCTGCTGATGGTGCAAAGGTCGGTGAAGGCGTAGTGAAAATCGATTGTGGTGGGAGATG 206
|||||||| | | || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 163 TGCTGCTGAAGCTACACAGGTCGGTGAAGGCGTAGTGAAAATTGATTGTGGTGGGAGATG 222
Query 207 CAAAGATAGATGCAGCAAATCTTCGAGAACGAAGCTATGCTTGAGAGCGTGCAACAGCTG 266
||||| ||||||||||||||| ||||| | || || || |||||||| |||||||||||
Sbjct 223 CAAAGGTAGATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTG 282
Query 267 TTGTTCCCGCTGCAACTGTGTGCCACCTGGTACTTCTGGAAA-CACCCACCTTTGTCCTT 325
||||| |||||||||||||||||||||||||||| | ||||| || ||||||||||||||
Sbjct 283 TTGTTACCGCTGCAACTGTGTGCCACCTGGTACTGCCGGAAACCA-CCACCTTTGTCCTT 341
Query 326 GCTACGCCTCCATTACCACTCACGGTGGCCGCCTCAAGTGCCCTTAAA 373
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 342 GCTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTAAA 389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19268572445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5