BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09630.1
Length=2615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942741 jgi|Araly1|942741|scaffold_603285.1 2202 0.0
Ahg922568 jgi|Araly1|922568|scaffold_103849.1 1262 0.0
> Ahg942741 jgi|Araly1|942741|scaffold_603285.1
Length=2138
Score = 2202 bits (1192), Expect = 0.0
Identities = 1300/1351 (96%), Gaps = 12/1351 (1%)
Strand=Plus/Plus
Query 963 TGAAGAATCACACAAAGATAGTCATAGGCACAATGAGGAT-G-G-TGCTGAAGAATCTCA 1019
|||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||
Sbjct 791 TGAAGAATCACACAAAGATAATCATAGGCACAATGAGGATGGTGCTGCTGAAGAATCTCA 850
Query 1020 CAAAGAGACTGCATCTGTGTTTCTTCATTCCACGACCAAGCATCAGAAAATTGAAAAGGT 1079
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 851 CAAAGAGAATGCATCTGTTTTTCTTCATTCCACGACCAAGCATCAGAAAATTGAAAAGAT 910
Query 1080 TCATGGAGCTACTTCAAAAAGGTCACGTGGGAAGTCTTCTCTT-CT--T---AGTGGTAA 1133
||||||||| ||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 911 TCATGGAGCAACTTCAAAAAGGTCACGTGGGAAGTCTTCTCTTGTTGGTGCGGGTGGTAA 970
Query 1134 GTCGGGGAAAACATCGCAAACTGATGCAAAAAGAAGAGCTCGAAGTCACAGATTTTCAGG 1193
||| ||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 971 GTCCGGGAAAACATCACAAACTGATACAAAAAGACGAGCGCGAAGTCACAGATTTTCAGG 1030
Query 1194 CGTATCTTGTGAGATGAAGCTGTTGAATTCCAGTCAACAAATACAAGAGCCTTTGAAAAC 1253
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1031 CGTATCTTGTGAGATGAAGCTGTTGAATTCCAGTCAACAAATAAAAGAGCCTTTGAAAAC 1090
Query 1254 TCAAAATTTTGCTGCACCCTCCTTACAATACATACAGATGGAGGATAAACCTGATGGAGA 1313
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1091 TCAAAATTTTGCTGCACCCTCCTTACAATACATAGAGATGGAGGATAAACCTGATGGAGA 1150
Query 1314 AGAACAGTGGGAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AGAACAGTGGGAGCCTAAATTTGCAGGTCACCAGAGTTTACAGGAACGAGAAGACTCTTT 1210
Query 1374 CTTGGTTCAAGAGCAGAAAATCCATTGTGGCTTTGTCAAAGCTCCTGAAGGATTGCCAAG 1433
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1211 CTTGGTCCAAGAGCAGAAAATCCATTGTGGCTTTGTCAAAGCCCCTGAAGGATTGCCAAG 1270
Query 1434 CACTGGATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAAATGTCACATTGCTGT 1493
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1271 CACTGGATTTGACCTGACAGAAGATGATGCTAACTATATCAGTAGATGTCACATCGCTGT 1330
Query 1494 GATATCCTGTATCTTTGGAAACTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAG 1553
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GATATCCTGTATTTTTGGAAATTCTGATCGCTTGAGGCATCCTGCTAATAAAATGGTAAG 1390
Query 1554 TAGTTTGTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAAC 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TAGTTTGTCAAGAAAAGATGTTTGCTTCGTTGTGTTTGTGGACGAGATTACCATGCAAAC 1450
Query 1614 ACTTTCTGCCGAAGGCCAAGTACCCGACGGAGCTGGATTCGTTGGTCTGTGGAAGTTGGT 1673
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1451 ACTTTCTGCCGAAGGCCAAGTACCTGACGGAGCTGGATTCGTTGGTCTGTGGAAATTGGT 1510
Query 1674 TGTGGTGAGGAATCTTCCTTACACAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTT 1733
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1511 TGTGGTGAGGAATCTTCCTTACGCAGATATGCGGAGGGTAGGGAAAATACCAAAACTGTT 1570
Query 1734 ACCACACAGACTTTTCACTTCGGCAAGGTACTCAATCTGGTTGGACAGCAAGTTACGTCT 1793
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1571 ACCACACAGACTTTTCCCTTCGGCAAGGTACTCAATCTGGTTAGACAGCAAGTTACGTCT 1630
Query 1794 CCAGTTGGACCCCCTAGTCATTTTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGC 1853
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1631 CCAGTTGGACCCCCTAGTCATACTGGAATACTTTCTGTGGCGTGAAGGGCACGAGTATGC 1690
Query 1854 TATCTCCAATCACTATGACCGCCATTGCCTATGGGAAGAAGTTGCACAAAACAAGAAGCT 1913
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1691 TATCTCCAACCATTACGACCGCCATTGCCTATGGGAAGAGGTTGCACAAAACAAGAAGCT 1750
Query 1914 GAACAAGTACAATCACACTGTCATTGATCAGCAGTTTGAGTTTTACCAGTCTGACGGGCT 1973
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1751 GAACAAGTACAATCACACTGTCATTGATCAGCAATTTGAGTTTTACCAGGCTGACGGGCT 1810
Query 1974 GACGAGATTCAATGCTTCAGATCCCCACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTC 2033
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1811 GACGAGATTCAATGCTTCAGATCCCAACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTC 1870
Query 2034 TTTCATTGTACGGGAACATACCCCCATGTCAAACCTATTCTCCTGTCTTTGGTTCAACGA 2093
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1871 TTTCATTGTACGAGAACATACCCCCATGTCAAACCTATTCTCTTGTCTTTGGTTCAACGA 1930
Query 2094 AGTTGAGCGCTTCACTCCCCGAGATCAGCTAAGCTTTGCATACACTTACCAGAAATTAAC 2153
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1931 AGTTGAGCGCTTCACTCCCCGAGATCAGCTGAGCTTTGCATACACCTACCAGAAATTAAC 1990
Query 2154 AAGGATGAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAA 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 AAGGATGAATCCTGACACTCCATTTAATCTTCACATGTTCAAGGATTGCGAGAGGAGAAA 2050
Query 2214 AATCACCAAATTGTTTCGTCACAGATCAGAGGAGAAGCGAAACCTTATACAAGCAGCAAC 2273
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2051 AATCACCAAATTGTTTCGTCACAGATCAGAAGAGAAGCGAAACCTTATACAAGCAGCAAC 2110
Query 2274 AACACAATAACAGACCACTTTTTGAATGCTG 2304
| || | ||||||||||||||||||||||||
Sbjct 2111 A-CA-A-TAACAGACCACTTTTTGAATGCTG 2138
Score = 1417 bits (767), Expect = 0.0
Identities = 827/856 (97%), Gaps = 3/856 (0%)
Strand=Plus/Plus
Query 128 GCTTCGTCGACAATGCGAGAATGGCTCAGTATAGACAATCAGGAACAGAGAGGTTTTTGG 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GCTTCGTCGACAATGCGAGAATGGCTCAGTATAGACAATCAGGAACGGAGAGGTTTTTGG 60
Query 188 GAGGTCGAAGCGGTTACAATCCTTATGTCAACGGTGGAGCTTCGTCAGATCACGTAGCGA 247
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 61 GAGGTCGAAGCGGTTACAATCCTTATGTCAACGGCGGAGCTTCGTCGGATCATGTAGCGA 120
Query 248 TCGGGATCCGTAACGGCGGTGGTAGTAATTTCGGAGTTGTAACTCAGCACGGGAAAGCTA 307
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 121 TCGGGATCCGTAACGGCGGTGGTGGTAATTTCGGAGTTGTAAATCAGCACGGGAAAGCTA 180
Query 308 GTCGATGGCGGCGATCTACTCGATTAGATAGGAATCGTCgttgtggtgttggctctttgg 367
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GTCGATGGCGGCGATCTACTCGATTAGATAGGAATCGTCGTTGCGGTGTTGGCTCTTTGG 240
Query 368 tgtttgttctttgtgttgtgctcgttgtttgtgtCTCAGCTTACTATTATTTCTCTGGTT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTTTGTTCTTTGTGTTGTGCTCGTTGTTTGTGTCTCAGCTTACTATTATTTCTCTGGTT 300
Query 428 ATACTAATTTCGGCAAAGATGATAAAGGAATTGATACAGCTGAAGGTGATTTTCTTACGA 487
|||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 301 ATACTAATTTTGGCAAAGATGATAAAGGGATGGATACATCTGAAGGTGATTTTCTTACGA 360
Query 488 ATGTGTCAAGAACTGATCCTTTGAAAATACTTAAGTTTGGTCATGGTTCAGTGTTACATG 547
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 ATGTGTCAAGAACTGATCCGTTGAAAATACTGAAGTTTGGTCATGGTTCAGTGTTACATG 420
Query 548 GAAGAGATTCGAGAGATTGGGATAAGGATGATAGAAGAAGGGATGAAGATTATAATGAGG 607
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACGAGATTCGAGAGATTGGGATAAGGATGATAGAAGAAGGGATGAAGATTATAATGAGG 480
Query 608 ATGATGTAGAGGATAAATCTGTTGTTGAGGAGAGGTCAGTGTCTGAAGTGAAAAAGGATG 667
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGATGTAGAGGATAAATCTGTCGTTGAGGAGAGGTCAGTGTCTGAAGTGAAAAAGGATG 540
Query 668 TATCGCTTCGGAATCCTTTGAAGGGTTCGGATTGGAAGGGGGTTGGTTTTTACAATGAAG 727
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 541 TATCGCTGCGGAATCCTTTGAAGGGTTCAGATTGGAAGGGGGTTGGTTTTTATAATGAAG 600
Query 728 CTGGACGTGATGAGCTGAAGAAGTATGAAGTGGAGTATCAGGCTTCTCTTGTAAAAGGTG 787
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGGACGTGATGAGCTGAAGAAATATGAAGTGGAGTATCAGGCTTCTCTTGTAAAAGGTG 660
Query 788 GTCAATCGTTGAAAGAGAATGATGGGCATCATCAGCCATTTGATACAGAATCTAATGAAG 847
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 GTCAATCTTTGAAGGAGAATGATGGGCATCATCAGCCATTTGATACTGAATCTAATGAAG 720
Query 848 ATGATTCGATTGATTCTCATGATACTCAAGGGGATGAATATGTTGACATGGGGCATGATG 907
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 ATGATTCAATTGATTCTCATGATACTCAAGGGGATGAATATGTTGATATGGGGCATGATG 780
Query 908 GGGATGAAAATGAAGAATCACACAAAGATAATCATAAGCACAATGAGGATGGTGCTG--- 964
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 GGGATGAAAATGAAGAATCACACAAAGATAATCATAGGCACAATGAGGATGGTGCTGCTG 840
Query 965 AAGAATCACACAAAGA 980
||||||| ||||||||
Sbjct 841 AAGAATCTCACAAAGA 856
> Ahg922568 jgi|Araly1|922568|scaffold_103849.1
Length=1981
Score = 1262 bits (683), Expect = 0.0
Identities = 1055/1234 (85%), Gaps = 28/1234 (2%)
Strand=Plus/Plus
Query 1053 GACCAAGCATCAGAAAATTGAAAAGGTTCATGGAGCTACTTCAAAAAGGTCACGTGGGAA 1112
||| ||||| |||| || || |||| | |||||| || |||||||||||||| |||| |
Sbjct 734 GACTAAGCAAGAGAATATGGAGAAGGATGATGGAGGTATTTCAAAAAGGTCACTTGGGGA 793
Query 1113 GTCTTCTCTT-CT--T-A--GTGGTAAGTCGGGGAAAACATCGCAAACTGATGCAAAAAG 1166
|||| |||| | | | |||||||||| ||||||||||| | ||||| |||| ||
Sbjct 794 TTCTTATCTTGTTAGTAAGGGTGGTAAGTCCGGGAAAACATCACGGTCTGATACAAAGAG 853
Query 1167 AAGAGCTCGAAGTCACAGATTTTCAGGCGTATCTTGTGAGATGAAGCTGTTGAATTCCAG 1226
||||| || ||| ||||| |||| | || || ||||| |||||||| |||||||| ||
Sbjct 854 AAGAGGTC---GTCGCAGATCTTCA-G-GT-TCATGTGAAATGAAGCTATTGAATTCGAG 907
Query 1227 TCAACAAATACAAGAGCCTTTGAAAACTC-AAAATTTTGCT-GCACCCTCCTTACAATAC 1284
|||||||||| ||||| ||||| |||| |||| | |||| | | ||| ||||| |||
Sbjct 908 TCAACAAATAGTGGAGCCCTTGAATACTCGAAAA-TCTGCTAG-ATTCTCTTTACAGTAC 965
Query 1285 ATACAGATGGAGGATAAACCTGATGGAGAAGAACAGTGGGAGCCTAAATTTGCAGGTCAC 1344
||| ||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 966 ATAGAGAAGGAAGATAAGCCTGATGGAGAAGAACAGTGGGAGCCTAGATTTGCAGGTCAT 1025
Query 1345 CAGAGTTTACAGGAACGAGAAGACTCTTTCTTGGTTCAAGAGC-AGAAAATCCATTGTGG 1403
|||||||||||||| |||||||| || ||| ||| | |||| | ||||||| ||||||||
Sbjct 1026 CAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTGAAGA-CAAGAAAATTCATTGTGG 1084
Query 1404 CTTTGTCAAA-GCTCCTGAAGGAT-TGCCAAGCACTGGATTTGACCTGACAGAAGATGAT 1461
|||||||||| || || |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1085 CTTTGTCAAAGGC-CCCAAAGGATCT-CCAAGCACTGGATTTGACCTGACAGAAGATGAT 1142
Query 1462 GCTAACTATATCAGTAAATGTCACATTGCTGTGATATCCTGTATCTTTGGAAACTCTGAT 1521
|||| |||||||||| ||| ||||| |||||||| || ||||||||||| || ||||||
Sbjct 1143 ACTAATTATATCAGTAGATGCCACATCGCTGTGATCTCATGTATCTTTGGCAATTCTGAT 1202
Query 1522 CGCTTGAGGCATCCTGCTAATAAAATGGTAAGTAGTTTGTCAAGAAAAGATGTTTGCTTC 1581
|||||||||| |||||| || |||||| ||||||| |||||||||||| |||| ||||||
Sbjct 1203 CGCTTGAGGCCTCCTGCCAACAAAATGATAAGTAGGTTGTCAAGAAAAAATGTGTGCTTC 1262
Query 1582 GTTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCCGAAGGCCAAGTACCC-GA 1640
|||||||||||||||||||||||||||||||||||||||| ||||| || | ||| ||
Sbjct 1263 ATTGTGTTTGTGGACGAGATTACCATGCAAACACTTTCTGCAGAAGGACATGC-CCCAGA 1321
Query 1641 CGGAGCTGGATTCGTTGGTCTGTGGAAGTTGGTTGTGGTGAGGAATCTTCCTTACACAGA 1700
| |||| |||||| |||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1322 CAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAATCTTCCTTATGCAGA 1381
Query 1701 TATGCGGAGGGTAGGGAAAATACCAAAACTGTTACCACACAGACTTTTCACTTCGGCAAG 1760
||||||||||||||| |||||||||||| |||| |||||| |||||||| | || |||||
Sbjct 1382 TATGCGGAGGGTAGGAAAAATACCAAAAATGTTGCCACACCGACTTTTCCCATCAGCAAG 1441
Query 1761 GTACTCAATCTGGTTGGACAGCAAGTTACGTCTCCAGTTGGACCCCCTAG-TCATTTTGG 1819
|||||||||||||||||||||||||||||| || ||||||||||| || | ||||| |||
Sbjct 1442 GTACTCAATCTGGTTGGACAGCAAGTTACGACTTCAGTTGGACCCACT-GCTCATTCTGG 1500
Query 1820 AATACTTTCTGTGGCGTGAAGGGCACGAGTATGCTATCTCCAATCACTATGACCGCCATT 1879
| |||||||| |||||| |||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1501 AGTACTTTCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCACTATGACCGTCATT 1560
Query 1880 GCCTATGGGAAGAAGTTGCACAAAACAAGAAGCTGAACAAGTACAATCACACTGTCATTG 1939
| |||||||||| ||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 1561 GTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAACCATACTGTTATTA 1620
Query 1940 ATCAGCAGTTTGAGTTTTACCAGTCTGACGGGCTGACGAGATTCAATGCTTCAGATCCCC 1999
|||| |||||| |||||||| || |||| ||||| || |||||||| || || |||||
Sbjct 1621 ATCAACAGTTTCAGTTTTACAAGGCTGATGGGCTAACCAGATTCAACGCGTCGGATCCGT 1680
Query 2000 ACAAGCTTCTTCCCAGCAATGTTCCAGAAGGGTCTTTCATTGTACGGGAACATACCCCCA 2059
|||||||||||| |||||||||||||| ||||||||||| ||||| | ||||| ||||
Sbjct 1681 TCAAGCTTCTTCCTAGCAATGTTCCAGAGGGGTCTTTCATAGTACGAGCTCATACTCCCA 1740
Query 2060 TGTCAAACCTATTCTCCTGTCTTTGGTTCAACGAAGTTGAGCGCTTCACTCCCCGAGATC 2119
|||| || |||||||| |||||||||||||| ||||| || |||||||||||||| || |
Sbjct 1741 TGTCGAATCTATTCTCTTGTCTTTGGTTCAATGAAGTAGAACGCTTCACTCCCCGGGACC 1800
Query 2120 AGCTAAGCTTTGCATACACTTACCAGAAATTAACAAGGATGAATCCTGACACTCCATTTA 2179
|||| |||||||| || |||||||||||| ||| ||||||||||||||| | |||||||
Sbjct 1801 AGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCCTGATAAACCATTTA 1860
Query 2180 ATCTTCACATGTTCAAGGATTGCGAGAGGAGAAAAATCACCAAA-TTGTTTCGTCACAGA 2238
||||||||||||||||||| || ||||| ||||| || | ||| ||||| |||||||||
Sbjct 1861 ATCTTCACATGTTCAAGGACTGTGAGAGAAGAAAGATTGC-AAAGTTGTTCCGTCACAGA 1919
Query 2239 TCAGAGGAGAAGCGAAACCTTATACAAGCAGCAA 2272
||||| ||||||||||||||||||||||||||||
Sbjct 1920 TCAGACGAGAAGCGAAACCTTATACAAGCAGCAA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98615644305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5