BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09640.1
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327146 jgi|Araly1|327146|fgenesh1_pm.C_scaffold_6002366 1792 0.0
Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1 990 0.0
> Ahg327146 jgi|Araly1|327146|fgenesh1_pm.C_scaffold_6002366
Length=1146
Score = 1792 bits (970), Expect = 0.0
Identities = 1101/1162 (95%), Gaps = 17/1162 (1%)
Strand=Plus/Plus
Query 285 ATGGTGTATTCTAGTGGAAGTTGGAGAGATGCGTATAAAGGAATGTCGTCTGATAATGTA 344
|||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1 ATGGTGGATTCTAGTGGAAGTTGGAGAGATGCTTATAAAGGAATGTCGTCGGATAATGTA 60
Query 345 AAGGGTTTAGTGTTGGCTCTATCTTCAAG-TATATTCATTGGAGCTAGCTTCATTGTTAA 403
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||
Sbjct 61 AAGGGTTTAGTGTTGGCTCTATCTTCAAGCT-TATTCATTGGTGCTAGCTTCATTGTCAA 119
Query 404 GAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGCTATTC 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 GAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGTTATTC 179
Query 464 TTACTTGCTTGAGCCTCTCTGGTGGATAGGAATGATAACAATGATTGTGGGGGAAATTGC 523
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TTACTTGCTTGAGCCTCTTTGGTGGATAGGCATGATAACAATGATTGTGGGGGAAATTGC 239
Query 524 AAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTAGTTACTCCTCTTGGTGCGCTTAG 583
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTCGTTACTCCTCTTGGTGCGCTTAG 299
Query 584 CATTATTATCAGCGCTTCTCTAGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGG 643
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATTATTATCAGTGCTTCTCTTGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGG 359
Query 644 GATCCTTGGTTGTGCTTTATGTATCGTTGGTTCGGTTACAATCGTGTTACATGCTCCACA 703
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 GATCCTTGGTTGTGCTTTATGTATCGTTGGTTCGGTAACAATCGTGTTACATGCTCCACA 419
Query 704 AGAACAAGATATTGTTTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT 763
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAACAAGTTATTGATTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT 479
Query 764 CTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACT 539
Query 824 TTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATC 599
Query 884 GGTTATGAGCGTGAAGGCGCTTGGAATAGCGTTGAAACTCACATTTTCTGGAACGAATCA 943
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 GGTTATGAGCGTCAAGGCGCTTGGAATAGCGTTGAAACTCACTTTTTCTGGAACGAATCA 659
Query 944 GTTAGGGTACCCGCAAACATGGGTCTTCACCGTGATAGTTCTTTTCTGCGTGATAACACA 1003
||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 660 ATTAGGATACCCGCAAACATGGGTCTTCACTGTGATAGTTCTTATGTGCGTGATAACACA 719
Query 1004 AATGAACTATTTAAACAAGGCGCTTGATACGTTCAACACAGCAGTGGTTTCACCCATATA 1063
|||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 720 AATGAACTATCTAAACAAGGCGCTAGATACGTTCAACACGGCAGTGGTTTCCCCCATATA 779
Query 1064 TTATGTTATGTTCACGTCGTTGACGATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGA 1123
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 TTACGTTATGTTCACGTCATTGACAATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGA 839
Query 1124 TCGGCAGAGCGGAACACAGATCATGACAGAGTTGTGTGGGTTCGTCACAATCCTATCTGG 1183
|||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 840 TCGGCAGAACGGAACACAGATCTTTACAGAGCTGTGTGGGTTCGTCACAATCCTATCTGG 899
Query 1184 AACTTTTCTTCTTCACACAACAACAGACATGGTTGATGGAGAGTCTAAAGGAAATTTATC 1243
|||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
Sbjct 900 AACTTTTCTTCTTCACACAACAACGGACATGGTTGATAGCGAGTCTAAAGGAAA-----C 954
Query 1244 ATCAGAGGAGGATAGTCATCTGCTTCTGCGAATTCCAAAACATTCAGAAGACAGTAACGG 1303
|| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ----GAT-A--AT---CATCTGCTTCTGCGAATTCCAAAACATTCAGAAGACAGTAACGG 1004
Query 1304 GTTTGTGCAGGATGGCATCATTCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACG 1363
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GTTTGCGCAGGACGGGATCATTCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACG 1064
Query 1364 GCCTGCTCGGCAAAACAAGCAACTGGAAGATGATCTTGAAGCTGTACCACTCCGAAGACA 1423
||||||||| |||| ||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1065 GCCTGCTCGTCAAACCAAGCAACTAGAAGAGGATCTTGAAGCTATACCACTCCGAAGACA 1124
Query 1424 AGAGAGTTCATTACGTTCATAA 1445
||||||||||||||||||||||
Sbjct 1125 AGAGAGTTCATTACGTTCATAA 1146
> Ahg473598 jgi|Araly1|473598|fgenesh2_kg.1__3552__AT1G34470.1
Length=1643
Score = 990 bits (536), Expect = 0.0
Identities = 820/957 (86%), Gaps = 19/957 (2%)
Strand=Plus/Plus
Query 275 TGTAGAAGCAATGGTGTA-TTCT-AGTGGAAGTTGGAGAGATGCGTATAAAGGAATGTCG 332
||||||||| |||| | | || | |||| ||||||||||||||||||||||||||||||
Sbjct 247 TGTAGAAGC-ATGGCG-AGTT-TGGGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCG 303
Query 333 TCTGATAATGTAAAGGGTTTAGTGTTGGCTCTATCTTCAAG-TATATTCATTGGAGCTAG 391
|| |||||| ||||||||||||| |||||| ||||||| || | |||||||||| |||||
Sbjct 304 TCGGATAATATAAAGGGTTTAGTTTTGGCTTTATCTTCGAGCT-TATTCATTGGTGCTAG 362
Query 392 CTTCATTGTTAAGAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTC 451
|||||||||||||||||||| || |||| ||||||||||||||||||||| || || ||
Sbjct 363 TTTCATTGTTAAGAAGAAAGGTCTCAAGAGAGCTGGTGCTTCTGGTCTCAGAGCTGGTTC 422
Query 452 TGGAGGCTATTCTTACTTGCTTGAGCCTCTCTGGTGGATAGGAATGATAACAATGATTGT 511
|||||| ||||||||| |||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 423 TGGAGGTTATTCTTACCTGCTTGAGCCTCTCTGGTGGGTAGGCATGATAACGATGATTGT 482
Query 512 GGGGGAAATTGCAAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTAGTTACTCCTCT 571
||||||||||| || ||||| || ||||| ||||| ||||||||| |||| ||||||||
Sbjct 483 TGGGGAAATTGCCAATTTTGCCGCTTATGCCTTTGCGCCTGCCATTTTAGTAACTCCTCT 542
Query 572 TGGTGCGCTTAGCATTATTATCAGCGCTTCTCTAGCACATATCATCTTACAAGAAAAGTT 631
||||| || ||||| |||||||||||| |||| || ||| ||||| |||| ||||||||
Sbjct 543 CGGTGCTCTCAGCATAATTATCAGCGCTGCTCTTGCTCATGTCATCCTACACGAAAAGTT 602
Query 632 GCACACTTTCGGGATCCTTGGTTGTG-CTTTATGTATCGTTGGTTCGGTTACAATCGTGT 690
||| ||||| ||| | |||||||||| ||| |||| | ||||||||| | || ||||| |
Sbjct 603 GCATACTTTTGGGCTTCTTGGTTGTGTCTT-ATGTGTTGTTGGTTCGATAACTATCGTCT 661
Query 691 TACATGCTCCACAAGAACAAGATATTGTTTCCGTTTTAGAAGTTTGGAATCTTGCAACAG 750
| |||||||| ||||||||||| |||| ||| || ||| |||| ||||||||||||||||
Sbjct 662 TGCATGCTCCTCAAGAACAAGAGATTGATTCTGTGTTACAAGTATGGAATCTTGCAACAG 721
Query 751 AACCTGCTTTTCT-CTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTT 809
||||||||||||| || ||||||||| || || ||||||||||| ||| |||| ||||||
Sbjct 722 AACCTGCTTTTCTTCT-CTACGCTGCAGCAGTAGTAGGAGCAGCCATTATACTCATAGTT 780
Query 810 CAATTTATACCACTTTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTT 869
|| ||| |||||| ||||| || || ||||||||||| |||||||| ||||| ||||||
Sbjct 781 CAGTTTGTACCACAGTACGGACAGTCACATGTCATGGTCTATATCGGGGTTTGTTCTCTT 840
Query 870 ATAGGATCATTATCGGTTATGAGCGTGAAGGCGCTTGGAATAGCGTTGAAA-CTCACATT 928
| |||||||| ||||| |||||||| || ||||| || ||||| || ||| || || ||
Sbjct 841 GTTGGATCATTGTCGGTCATGAGCGTCAAAGCGCTCGGGATAGCATT-AAAGCTTACGTT 899
Query 929 TTCTGGAACGAATCAGTTAGGGTACCCGCAAACATGGGTCTTCAC-CGTGATAGTTCTTT 987
||| |||| |||||||||| ||||| || |||||||||||| | | |||||||||||
Sbjct 900 TTCAGGAATGAATCAGTTAATTTACCCTCAGACATGGGTCTTCTCGC-TGATAGTTCTTA 958
Query 988 TCTGCGTGATAACACAAATGAACTATTTAAACAAGGCGCTTGATACGTTCAACACAGCAG 1047
|||||||||||| |||||||||||| |||||||||||||||| ||||||||||| || |
Sbjct 959 CCTGCGTGATAACCCAAATGAACTATCTAAACAAGGCGCTTGACACGTTCAACACGGCTG 1018
Query 1048 TGGTTTCACCCATATATTATGTTATGTTCACGTCGTTGACGATCTTGGCTAGTGTCATCA 1107
| |||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 1019 TAGTTTCACCCATATACTATGTTATGTTCACATCGTTGACCATCCTGGCTAGTGTCATCA 1078
Query 1108 TGTTTAAGGATTGGGATCGGCAG-AGCGGAACACAGATCATGACAGAGTTGTGTGGGTTC 1166
|||||||||| |||||||| ||| | |||||| ||||| |||| ||||||||||||||
Sbjct 1079 TGTTTAAGGACTGGGATCGACAGGA-CGGAACTCAGATTGTGACGGAGTTGTGTGGGTTT 1137
Query 1167 GTCACAATCCTATCTGGAACTTTTCTTCTTCACACAACAACAG-ACATGGTTGATGG 1222
|| |||||||| || ||||| ||||| ||||||| ||||| || |||||||||||||
Sbjct 1138 GTGACAATCCTTTCAGGAACCTTTCTGCTTCACAAAACAA-AGGACATGGTTGATGG 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62429911555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5