BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09650.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489817 jgi|Araly1|489817|fgenesh2_kg.6__2951__AT4G09650.1 1170 0.0
> Ahg489817 jgi|Araly1|489817|fgenesh2_kg.6__2951__AT4G09650.1
Length=828
Score = 1170 bits (633), Expect = 0.0
Identities = 799/871 (92%), Gaps = 44/871 (5%)
Strand=Plus/Plus
Query 49 caacaacaatggcgtctcttcaacaaactctattctctcttcaatccaaactcCCACCAT 108
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CAACAACAATGGCGTCTCTTCAACAAACTCTATTCTCTCTTCAATCAAAACTCCCACCAT 60
Query 109 CCTCCTTCCAAATCGCCAGATCTCTCCCACTCCGAAAAACCTTCCCAATCCGAATCAACA 168
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CCTCCTTCCAAATCGCCAGATCTCTCCCTCTCCGAAAAACCTTCCCAATCCGAATCAACA 120
Query 169 ACGGTGGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 228
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AC---GGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGG 177
Query 229 CATTAGCAGACGTCGCGAAAAGAAACGACACAATGGAATTAACAGTCACAGACATCGAGA 288
| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
Sbjct 178 CTTTAGCAGACGTCGCTAAAAGAAACGACACAATGGAATTAACAGTCGCCGACATCGAAA 237
Query 289 AGCTCGAACAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 348
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACTCGATCAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCA 297
Query 349 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATAGTGAAATCGTCGTCTCTTCAATCTC 408
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 298 CCGTCGAGAAGAAACGTCAAGTCATCGACGACATCGTGAAATCATCATCTCTTCAATCTC 357
Query 409 ACACATCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 468
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATACCTCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGA 417
Query 469 TCGTTAAGGAGTTTGAGTTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 528
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGTTAAAGAGTTTGAATTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTA 477
Query 529 GGTCGGTGGTGAAATTGGAAGCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 588
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTCGGTGGTGAAATTGGAACCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGT 537
Query 589 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATGCGAGTCTTGTGGCTGGTT 648
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 TAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATCCGAGTCTTGTGGCTGGTT 597
Query 649 TTACGATTCGGTATGGTGAATCCGGTTCGAAGCTTATTGATATGAGTGTGAAGAAACAGC 708
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 598 TTACGATTCGGTATGGTGATTCCGGTTCGAAGCTTATTGATATGAGTGTTAAGAAGCAGC 657
Query 709 TTGAAGATATTGCTTCT-CAGCTTGAACTTGGTGAGATTCAATTAGCTACTTGAGATTTG 767
|||||||||||||| | || ||||||||||||||||||||||||||||||||| | |
Sbjct 658 TTGAAGATATTGCT-CAACAACTTGAACTTGGTGAGATTCAATTAGCTACTTGA-A---G 712
Query 768 GGAAAAATTGTATAAGAGAAAAATTTGAGAATCttttttttttgtgcaagtttaattttt 827
|||| || | ||||| | | | | |||||||||| | ||| | ||
Sbjct 713 AGAAA--TT-T----GAGAA---T--G-G--T-TTTTTTTTTT-T-----TTT--TCTTC 748
Query 828 tttCTCCTCATCTTCTTTCTCTATTAATCAATCATATAATATACAGTACTGATGATATAA 887
|| || || | | |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 749 TT-CT--TC-T-T-CTTTCTCTATTAATCAATCATATAATATAC--T---GATGATATAA 797
Query 888 TAATGATTCTGAGTTTATTATCTTTGTAATT 918
|||| ||||||||||||||||||||||||||
Sbjct 798 TAATAATTCTGAGTTTATTATCTTTGTAATT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5