BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09670.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489818 jgi|Araly1|489818|fgenesh2_kg.6__2952__AT4G09670.1 1875 0.0
> Ahg489818 jgi|Araly1|489818|fgenesh2_kg.6__2952__AT4G09670.1
Length=1195
Score = 1875 bits (1015), Expect = 0.0
Identities = 1138/1198 (95%), Gaps = 6/1198 (1%)
Strand=Plus/Plus
Query 54 AAAAACCCATAACCACAACAATGGCCACCGAAACCCAAATCCGAATCGGAGTAATGGGTT 113
||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 AAAAATCCATACCCACAACAATGGCTACCGACACCCAAATCCGAATCGGAGTAATGGGTT 60
Query 114 GCGCCGATATCGCTCGAAAAGTCTCTCGAGCAATCCACCTCGCTCCCAACGCCACAATCT 173
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 61 GCGCCGACATCGCTCGAAAAGTCTCTCGAGCCATCAACCTCGCTCCCAACGCCACAATCG 120
Query 174 CCGGCGTAGCAAGCCGGTCTTTAGAAAAAGCCAAAGCCTTT-GCCACCGCCAATAACTAC 232
||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 121 CCGCCGTAGCAAGCCGTTCTTTAGAAAAAGCCAAA-TCTTTCGCCACCGCCAATAACTAC 179
Query 233 CCAGAATCAACCAAAATCCACGGCTCTTACGAATCTCTTCTCGAAGATCCAGAGATCGAT 292
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 180 CCAGAATCAACCAAAATCCACGGCTCTTACGAATCAATCCTCGAAGATCCAGAGATCGAT 239
Query 293 GCGCTCTATGTTCCTCTCCCCACTAGTCTCCACGTTGAGTGGGCTATTAAAGCAGCTGAG 352
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GCTCTCTATGTTCCTCTGCCCACTAGTCTTCACGTTGAGTGGGCTATTAAAGCAGCTGAG 299
Query 353 AAAGGGAAACATATCCTTTTGGAGAAGCCTGTTGCTATGAACGTAACTGAGTTTGATAAG 412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 AAAGGGAAACATATCCTTTTGGAGAAGCCTGTTGCTATGAATGTAACTGAGTTTGATAAG 359
Query 413 ATTGTTGATGCTTGTGAAGCTAATGGTGTTCAGATTATGGATGGTACTATGTGGGTTCAT 472
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGTTGTTGCTTGTGAAGCTAATGGTGTTCAGATTATGGATGGTACTATGTGGGTTCAT 419
Query 473 AATCCTAGAACTGCTTTGCTTAAAGAGTTTCTT-TCTGATTCTGAACGTTTTGGTCAGCT 531
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 420 AATCCTAGAACTGCTTTGCTTAAAGAGTTT-TTGTCTGATTCTGAACGTTTTGGTCAGCT 478
Query 532 TAAAACTGTACAGAGTTGTTTCTCATTTGCTGGAGATGAAGATTTTCTTAAAAACGATAT 591
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 TAAAACTGTACAGAGTTGTTTCTCATTTGCTGGAGATGAAGATTTTCTCAAAAACGATAT 538
Query 592 CCGTGTGAAACCTGGTCTTGACGGGCTTGGTGCGCTAGGAGATGCGGGGTGGTACGCGA- 650
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 539 CCGTGTGAAACCGGGTCTTGATGGGCTTGGTGCGCTAGGAGATGCTGGGTGGTACGCGAT 598
Query 651 TCAGAGCAACTCTTTTAGCTAATAACTTTGAGCTTCCGAAAACTGTGACTGCTTTCCCCG 710
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 599 TC-GAGCAACTCTTTTAGCTAATAACTTTGAGCTTCCGAAAACTGTGACGGCTTTTCCCG 657
Query 711 GTGCTGTGTTGAATGAAGCAGGAGTGATACTTTCCTGTGGAGCATCTTTGAGTTGGGAAG 770
| |||||||| || || || |||||||| |||||||||||||||||||||||||||||||
Sbjct 658 GGGCTGTGTTAAACGAGGCTGGAGTGATTCTTTCCTGTGGAGCATCTTTGAGTTGGGAAG 717
Query 771 ATGGACGAACTGCAACTATATATTGTTCATTCTTGGCTAACTTAACAATGGAGATAACTG 830
||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 718 ATGGACGGACTGCAACTATATATTGTTCGTTTTTGGCGAACTTGACAATGGAGATAACTG 777
Query 831 CCATTGGAACGAAAGGCACACTCCGTGTACACGACTTCATTATCCCGTATAAGGAGACTG 890
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 778 CCATTGGAACGAAAGGCACACTTCGTGTGCACGACTTTATTATCCCGTATAAGGAGACTG 837
Query 891 AGGCGTCGTTTACCACGAGCACTAAAGCTTGGTTCAATGACCTTGTGACTGCGTGGGTTA 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGGCGTCGTTTACCACGAGCACTAAAGCTTGGTTCAATGACCTTGTGACTGCGTGGGTTA 897
Query 951 GTCCCCCGAGTGAGCATACGGTTAAGACAGAGCTTCCACAAGAGGCATGTATGGTGAGAG 1010
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 898 GTCCCCCGAGTGAGCACACGGTTAAGACAGAGCTTCCGCAAGAGGCATGTATGGTGAGGG 957
Query 1011 AGTTTGCTCGATTGGTTGGAGAAATCAAGAACAATGGTGCAAAGCCTGATGGGTACTGGC 1070
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AATTTGCTCGATTGGTTGGAGAAATCAAGAACAATGGTGCAAAGCCTGATGGGTACTGGC 1017
Query 1071 CTAGTATTAGCCGAAAGACGCAGCTAGTGGTTGATGCTGTTAAAGAGTCTGTTGATAAAA 1130
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1018 CTAGTATTAGCCGAAAGACGCAACTGGTTGTTGATGCTGTTAAAGAGTCTGTTGATAAAA 1077
Query 1131 ACTATCAACAGATTAGTCTCTCTGGTCGTTGAAGGAAAGGACTCAGACTATAAATGTTGT 1190
| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 1078 AGTATCAACAGATTAGTCTCTCTGGTCGTTGAAGGAAAGGACTCAAATTAGAAATGTTGT 1137
Query 1191 CGTGTGTtctctcctctctcgctctctATGTTCAAACTTCGATCAACCGTTTAAGTGT 1248
| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 CATGAGTTCACTCCTCTCTCGCTCTCTATGTTCAAACTTCGATCATCCGTTTAAGTGT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5