BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09680.1
Length=4169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489822 jgi|Araly1|489822|fgenesh2_kg.6__2956__AT4G09680.1 2665 0.0
> Ahg489822 jgi|Araly1|489822|fgenesh2_kg.6__2956__AT4G09680.1
Length=3199
Score = 2665 bits (1443), Expect = 0.0
Identities = 1702/1826 (93%), Gaps = 21/1826 (1%)
Strand=Plus/Plus
Query 2071 GGTCACCCAGGAATGCCTGACTGTACTAGTGTATTCATCGAGGCTTTAGTCCTTCCGTGG 2130
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1381 GGTCACCCAGGAATGCCTGACTGTACTAGTGCATTCATCGAGGCTTTAGTCCTTCCGTGG 1440
Query 2131 GATCTCATTTGCACTGTGACCGAAGAAGA-G--GCAGCTGCTCCCAATTTTGAAGAACAT 2187
|| ||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||
Sbjct 1441 GAACTCATTTGCACTGTGACTGAAGAAGACGCAGCAGCTGCTCCCTATTTTGAAGAACAT 1500
Query 2188 GATACTTCCCAAGAAATACGTCCACATAAGAGATGTAAAACTAATAATGGGCTACAGAGT 2247
|||||||| |||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1501 GATACTTCGCAAGAAATACGTCCACATAAGAGATGTAAAACTAATAATGAATTAGAAAGG 1560
Query 2248 C-AA-AGCTTTCTATCTGTGCCACATGAAATTTCTTGCCAGATGACCATCAGATGTGCTA 2305
| || ||| | |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1561 CAAAGAGC-AT-TATCTGTGCCGCATGAAATTTCTTGCCAGATGACCATCAGATGTGCTA 1618
Query 2306 GTAGTCACTGCTTGGTTGCAACAGCAACTCTTTCTAATTTGACGGAGAACAAAAGTGGTA 2365
|||||||||| ||||| || ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1619 GTAGTCACTGTTTGGTCACAGCAGCAACTCTTTCAAATTTGAGGGAGAACAAAAGTGGTA 1678
Query 2366 AAATGCATAGTGCTATGCGTGTGCTGTTAGAATTCATACCTGAATGCAGTAACTATTATG 2425
| ||||| | | | | ||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 1679 ACATGCACATTACGAAGCGTGTGCTCTTAGAATTCATACCTGAGTGCCGTAACTATTATG 1738
Query 2426 GGTTACAGATTGGCGGTTGCTATTTGATGAAGCATGGCTCTGATGATTCCTTTTGTGTTG 2485
||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct 1739 CTTTACAGATTGGCGGTTGCTATTTGATGAAACATGACACTGATGATTCTTTTTGTGTTG 1798
Query 2486 GACGGTCTGGCATATCTAACAATGATAAAATCAATTTTAGACCAGAAACACGTTTATGGA 2545
||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||
Sbjct 1799 GACGGTCTGGCATATCTAACAATGACAAAATTGGTTTTAGACCTGAAACACGTATATGGA 1858
Query 2546 GTCTGGAATTTTCTTTCGACGAAGTTCTCACCCATGATGGATCTATGGATGTACATCCTC 2605
|| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1859 GTGTGGAATTTTCTTTTGATGAAGTTCTCACCCATGATGGATCTATGGATGTATATCCTC 1918
Query 2606 TGGTGTCTTCTCAACCATCTTTTGCGGTGGAAC-AGCAAAATGTTTCTAGTCGACAACCT 2664
|||||||||||||||||||| |||||||||||| || ||||||||| ||||| |||||||
Sbjct 1919 TGGTGTCTTCTCAACCATCTCTTGCGGTGGAACAAG-AAAATGTTTTTAGTCCACAACCT 1977
Query 2665 TGTTCAGATGTTTCGCTTCTTCTCCCTTATGATGCAAAAGGACTCTTTTCAGTATTTCTC 2724
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1978 TGTTCAGATGTTTCACTTCTTCTCCCTTATGATGCAAAAGGACTCTTTTCGGTATTTCTC 2037
Query 2725 AACGACTTGGAAG-GGCTTAATAAGCCATTGGCAGCTGGGAAGGACAATAATAATATAT- 2782
|| ||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2038 AAAGACGTGGAAGAAG-TTAATAAGCCATTGGCAGCTGGGAAGGACAATAATAATAT-TG 2095
Query 2783 CATGCTGTACTCAGTCGGAGACA-ATAATGCATGCAGAGCCGTCTCGACTACTTCCTTCC 2841
||||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||
Sbjct 2096 CATGCTGTACTCAGTCGGAGA-AGATAATGCATGCAGAGCCGTCTCGAGTACCTCCTTCC 2154
Query 2842 AACAGCTTGTTTCCTGAAGGAAATCTTGCTACTTTCAGAGGTGACGTAGTAGCAGTTGAC 2901
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 2155 AACAGCTTGTTTCCTGAAGGAAATCTAGCGACTTTCAGAGGCGACGTAGTAGCAGTTGAC 2214
Query 2902 GCTGTTACCTCTTCTGTCGTTGATGTTTCAAGCAGCTATTGCATTAATGTTCTAGTCAAT 2961
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 GCTGTTACCTCTTCTGTCAATGATGTTTCAAGCAGCTATTGCATTAATGTTCTAGTCAAT 2274
Query 2962 CATCAAATGGTGAAGATATTTGGTCCACTTAGAAGGCATTCATATCTCACTGGATTTGGC 3021
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2275 CATCAAATTTTGAAGATATTTGGTCCACTTAGAAGGCATTCATATCTCACTGGATTCGGC 2334
Query 3022 TTTGGGACGAATGCAACATTCTACCGGATTCTTGGAACGGGAGAGCAAAACAGCTTTGTG 3081
|||| ||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 2335 CCTGGGGCGAGTGCAACATTCTACCGGATTCTTGGAACAGGAGAGGAAAACAGGTTTGTG 2394
Query 3082 TTGACATCAGCATCGTTTATCAAAATAAACTCTCGAAAGGCATTGGATAGTCCGCCGTTA 3141
|||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||
Sbjct 2395 TTGACATCAGCATCGTTTGTCAAGATAAACTCACGAAAGGCATTGGATAGTCCGCAGTTA 2454
Query 3142 GAGAAACCGACTCACGGAGCTGCTTTGTGTCTGCCCAAAATTACACCTCAGGAATTCGTA 3201
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 2455 GAGAAACCGACTCACCGAGCTGCTATGTGTCTGCCCAAAATTACACATCAGGAATACGTA 2514
Query 3202 CCTTGCATTCTTGCTGGTCCTGCTTGTAATTCGTTCTCAGGAAACGAGGATAATCAGCAA 3261
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2515 CCTTGCATTCTTGCTGGTCCTGCTTGTAATTCACTCTCAGGAAACAAGGATAATCAGCAA 2574
Query 3262 ATAAAGTTTGCCTGCAAGCAACAGGTTCTTTCAGTTTATCTTCTGGTTCTCCAAACTAGA 3321
||||||| ||||| || | |||||||||||||||||||||||||||||||||| |||
Sbjct 2575 ATAAAGTCTGCCT----GC-A-AGGTTCTTTCAGTTTATCTTCTGGTTCTCCAAACGAGA 2628
Query 3322 TCTGATGATCCCTCAGAAAACGAATGTAGGAACAATATTGATATACCACTTGCAGGATTT 3381
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 TCTGATGATCTGTCAGAAAACGAATGTAGGAACAATATTGATATACCACTTGCAGGATTT 2688
Query 3382 GTGGTAGATGACGGATCATCAACTTATCTTTGCTGGACGAGTGGGGAAAGAGCGTTTACA 3441
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2689 GTGGTAGATGACGGATCATCAATTTATCTTTGCTGGACGAGTGGGGAAAGAGCGTATACA 2748
Query 3442 ATTCTTAGGCTGCACGAAGAGTTACCTGAAGAAACCATTGATGTGGTACAGTGGACTAGA 3501
||||||||||||||||||||||| ||||||||| |||||||||||| | |||||| ||||
Sbjct 2749 ATTCTTAGGCTGCACGAAGAGTTGCCTGAAGAAGCCATTGATGTGGCAAAGTGGATTAGA 2808
Query 3502 AGATACAGCAACTGGGGCACCACAGCTTACCATCTTGACCAAATTGTTCGGGTTCACAAG 3561
||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2809 AGAGACAGCAGCCGGGGCACCACAGCTTACCATCTTGAACAAATTGTTCGGGTTCACAAG 2868
Query 3562 AGAATAGTGATGAAGTGCAATGGATCACAGATTGACGTACTCTTTCAAGACATCACCATT 3621
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2869 AGAATAGTTATGAAGTGCAATGGATCACAGATTGACGCACTCTTTCAAGACATCACCATT 2928
Query 3622 GCTGTTACTTCAGATCAACTTCTCACCAAATCAGAGGATAAGTTCCTCAAGTGGTTGATC 3681
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2929 GCTGTTACTTCAGATCAACTTCTCACCAAGTCAGAGGATAAGTTCCTCAAGTGGTTGATC 2988
Query 3682 CTAAATGCCATTAGCGGCCCCATATGGGAAGTTGCCGCGAGCTCAATGGACATGAAAATG 3741
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2989 CTAAATTCCATTGGCGGCCCCATATGGGAAGTTGCCACGAGCTCAATGGACATGAAAATG 3048
Query 3742 ATTGAGCATTTGGAGAGGGAACAGTGTGTGGAGATGGAGACATCAAGATATAATCTGCAG 3801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3049 ATTGAGCATTTGGAGAGGGAACAGTGTGTGGAGATGGAGACATCAAGACATAATCTGCAG 3108
Query 3802 AGTGTTTGGGGTAATGAAGTATGCCAAGTGGATCCGTTGGTCCGAGCTTGGAGCTTACTC 3861
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 AGCGTTTGGGGTAATGAAGTATGCCAAGTGGATCCGTTGGTCCGAGCTTGGAGCTTACTC 3168
Query 3862 CAAGGTTTGCTAAATAGCTGATCATG 3887
||||||||||||||||||||||||||
Sbjct 3169 CAAGGTTTGCTAAATAGCTGATCATG 3194
Score = 1247 bits (675), Expect = 0.0
Identities = 922/1037 (89%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 58 ATGGAGAACACCACAATTCTCACGGTTAAGGACCTTGTCAACGAAGGAATAGCCGTCACC 117
||||||||| |||||||||||||| || ||| |||||| || |||| ||||||||||
Sbjct 1 ATGGAGAACGCCACAATTCTCACGATTGCGGAACTTGTCCACAAAGGCCGAGCCGTCACC 60
Query 118 GGTGCATCGTCGCTATTC-TCTTCCGCTGCTTCTCACTCGTCTTCCGAATCAAC-CAGTA 175
||| |||||||||||||| || |||||||| | ||| || | ||| || || | ||
Sbjct 61 GGTTCATCGTCGCTATTCTTC-TCCGCTGC-T-ACAC-CGAC-TCC---TC-ACTC-GT- 109
Query 176 CGAACCCTAAATCACATCCCGGTGCCGTCGATTCAGACTTTAGCCGTAAGTTTCTCACAC 235
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 110 C--TTCC-GAATCACATCCCGGTGCCGTCGATTCAGACTTTAGCCGTAAGTTTCTCGCAC 166
Query 236 CGTTGAACT-ACCCAACGGTTATCTTCGGGACGGTAGCTCTTCCTTCCGAAACCCTAAAA 294
||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 167 CGTTGAA-TCACCCAGCGGTTATCGTCGGGACGCTAGCTCTTCCTTCCGAAACCCTAAAA 225
Query 295 TGTCCGAATCGCTACTGCTTTCGATTCACAGACGGTGATTTGACAATCTGCTGTGATATC 354
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 226 TGTCCGAATCGCTACTGCTTTCGATTCTCAGACGGTGATTTGACAATCTGCTGTGATATC 285
Query 355 CTTGGATTCG-AATTCCGCGCGATTGGGAGTAAGATTTGTGTTCTATCTTGGAATTTTCT 413
||| |||||| |||| |||||||||||||||| |||||||||||| || |||||||||||
Sbjct 286 CTTAGATTCGAAATT-CGCGCGATTGGGAGTACGATTTGTGTTCTCTCCTGGAATTTTCT 344
Query 414 TCCTATGAATCATTCTGGTGGATTTTTGGAGATAATCAACTGGAAATTTGTGGATAGTGG 473
||||||||| |||| | |||||||||||||||| || || |||||||||||||||| ||
Sbjct 345 TCCTATGAAGCATTGTTGTGGATTTTTGGAGATTATTAAGTGGAAATTTGTGGATACTGA 404
Query 474 TAGTTTGCTATCTCGGTGTTCTGGAATTAGTTCGTTTCCATTGATTCCTTCTTTGTATTC 533
|| |||| | | || || || | |||||||||||||||||||||||||||||||
Sbjct 405 TAATTTGGT-T-TC-----TC-GG---T-GTTCGTTTCCATTGATTCCTTCTTTGTATTC 452
Query 534 ATCGCAAAACGGTGACCGGAAGTCACGGTACAGCGTTTGTGGTGTGTTAGAGTCTATCAG 593
| ||||||||| |||||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct 453 ACCGCAAAACGTTGACCGTAAGTCGCGATATAGCGTCTGTGGTGTGTTAGAGTCTATCAG 512
Query 594 CCCTGTGTCTGTTGTTCCTTGT-ATGGATGGGGTTTCAAGTGATTCTGTAAATCTTCCTG 652
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 513 CCCTGTGTCTGTTGTTCCTTGTCA-GGATGGGGTTTCAAGTGATTCTGTAAATCTTCCTG 571
Query 653 GGTTCTTAGTACATGTCATGGCTTGTGAGTGTAAAGTGTATAGCCGGGATGCGATTGATT 712
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 572 GGTTCTTAGTGCATGTCATGGCTTGTGAGTGTAAAGAGTATAACCGGGATGCGATTGATT 631
Query 713 GCGGTCACGCTTTTGAGAGGTCTGTATTTGTTTACTTCTGTGGTTTAGAGGCTGCGAGTT 772
||||||| |||||||||| |||||| ||||||||||| ||||||| || |||||||||||
Sbjct 632 GCGGTCATGCTTTTGAGAAGTCTGTTTTTGTTTACTTATGTGGTTCAGTGGCTGCGAGTT 691
Query 773 GGCATCCTGTGGTGATGAAGTTAGTTGGAAGAAATGTTGCTCTTTCCGGGTTGAAAAGGA 832
|||| |||| | | | |||| ||||||| || ||||||||| |||| |||||||||||||
Sbjct 692 GGCACCCTGCGATAACGAAGCTAGTTGGGAGTAATGTTGCTTTTTCTGGGTTGAAAAGGA 751
Query 833 AGTTGGTTTATGTAAGAGGTGATTCTCTGTTGGTGTTTGTGACTACTGAGAATTCTGTTC 892
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 752 AGTTGGTTTATGTAAGAGGTGATTCTCTGTTGGTGTTTGTGACGACTGAGAATTCTGTTC 811
Query 893 TTCATCCACCTTGGTTATCTAAGAAAGGGACAGTTTCGAAAACTGTTGTTGATAGGAGAG 952
||||||||||||||||||| |||||| |||||||| |||| ||| ||||||||||||||
Sbjct 812 TTCATCCACCTTGGTTATCGAAGAAACAGACAGTTTTGAAAGCTGGTGTTGATAGGAGAG 871
Query 953 GTAACTGTGGTTCCTACCGTGGATATGTTAGAGGTTTGTATTTGAAAGGAAAGCTTGTTG 1012
|||||| |||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||
Sbjct 872 GTAACTACGGTTCCTACCTTGGATTTGTCAGAGGTTTGTACATGAGAGGAAAGCTTGTTG 931
Query 1013 AGATGGATGAAGATGTCTGGCTTTTATTGACGGATCAGATACTCAATAGATCACACAGTA 1072
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 932 AAATGGATGAAGATGTCTGGCTTTTATTGACGGATCAGATACACAACAGATCACACAGTA 991
Query 1073 TCCGTACTGGTTCCCTT 1089
|||| |||||||| |||
Sbjct 992 TCCGAACTGGTTCTCTT 1008
Score = 590 bits (319), Expect = 3e-167
Identities = 356/374 (95%), Gaps = 2/374 (1%)
Strand=Plus/Plus
Query 1423 GGTGGGATCTTTACTGAATTCTGCATGCATGAGTCATGCGGATGCAATAGTGAAGCTCGT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTGGGATCTTTACTGAATTCTGCATGCATGAGTCATGCGGATGCAATAGTGAAGCTCGT 1068
Query 1483 GATTGCAACCTAAAACTGGTAATGCCCATCTCAAGTTTTGTCCACCACGTCAAGGTTATG 1542
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||
Sbjct 1069 GATTGCAACCTAAAACTGGTAATGCCTATCTCAAGTTTTGTTCACCACTTCAAGGTCATG 1128
Query 1543 CTGAATGAATTGCTTTCTCAGATTAAGAAAGACTTTAGTGCTAGTGATTGCTTAAGTCAT 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1129 CTGAATGAATTGCTTTCTCAGATTAAGAAAGACTTTAGTGCTAGTGATTGCTTAAGTGAT 1188
Query 1603 TCATCGTCAACATGGAAAAGATACAATAATACAAACCCGAAGACTCTTAGAAGTGAGGAT 1662
||| |||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||
Sbjct 1189 TCACCGTCAACATGGAAAAGGTACAATCATACAAACACGAAGACTTTTAGAAGTGAGGAT 1248
Query 1663 ACTGGTGTCATCTTGCTTGGAAGATTGAAGATCTCATCTTCTGGAAGACTACAATTGCAT 1722
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1249 ACTAGTGTCATCTTACTTGGAAGATTGAAGATCTCATCTTCTGGAAGACTACAATTGTAT 1308
Query 1723 GACAGAACTAGCAGTATTGATGTTCT-GACTCCAGACCTTCTAAGTGATAGAAATGCGAG 1781
|||||| |||||||||||||| |||| | ||||||||||||||||||||| |||||||||
Sbjct 1309 GACAGAGCTAGCAGTATTGATATTCTTG-CTCCAGACCTTCTAAGTGATATAAATGCGAG 1367
Query 1782 CAGGATATGTGAGG 1795
||||||||||||||
Sbjct 1368 CAGGATATGTGAGG 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157634467366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5