BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G09690.1

Length=1038
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942712 jgi|Araly1|942712|scaffold_603256.1                        239    3e-62
  Ahg943568 jgi|Araly1|943568|scaffold_604112.1                        219    5e-56


> Ahg942712 jgi|Araly1|942712|scaffold_603256.1
Length=360

 Score =  239 bits (129),  Expect = 3e-62
 Identities = 177/200 (89%), Gaps = 3/200 (2%)
 Strand=Plus/Plus

Query  7    TCTGAGGGAGTGTCACTACCGTTGATCCACGAGCATCTTATGATACCTTGGAATGACCTG  66
            ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  27   TCTGAGGAAGTGTCACTACCGTTGATCCACGAGCATCCTATGATACCTTGGAATGATCTG  86

Query  67   AGGAAAGGTGATTGTTGTGGACGCTTGGAAGCTATCAGTGATGGCTACTATTGCAAAAGC  126
             |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| 
Sbjct  87   CGGAAAGGTGATTGTTGTGGACGTTTGGAAGCTATCAGTGATGGCTATTACTGCAAAAGA  146

Query  127  TGTGATTTCTTTGTCCACAAGAAATGTGGCGATGAGTGCTCCGAGTTTATCGAACACCCA  186
            ||||| |||||||| |||| | |||||  |  ||||| |||||| |||||| ||||||||
Sbjct  147  TGTGACTTCTTTGTTCACAGGGAATGTA-C--TGAGTCCTCCGAATTTATCAAACACCCA  203

Query  187  TGTCACTCCATTCACACTCT  206
            | ||||||  ||||| ||||
Sbjct  204  TCTCACTCTGTTCACTCTCT  223


> Ahg943568 jgi|Araly1|943568|scaffold_604112.1
Length=351

 Score =  219 bits (118),  Expect = 5e-56
 Identities = 176/203 (87%), Gaps = 7/203 (3%)
 Strand=Plus/Plus

Query  6    TTCTGAGGGAGTGTCACTACCGTTGATCCACGAGCATCTTATGATACCTTGGAATGACCT  65
            |||||||||||||| | | ||||||||||||||||||| |||||| ||||||||||| ||
Sbjct  31   TTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAATGATCT  90

Query  66   GAGGAAAGGTGATTGTTGTGGACGCTTGGAAGCTATCAGTGATGGCTACTATTGCAAAAG  125
             |||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| 
Sbjct  91   AAGGAAAGGTGATTGCTGTGGACACTTGGAAGCTATCAGTGATGGCTACTATTGTAAAAC  150

Query  126  CTGTGATTTCTTTGTCCACAAGAAATGTGGCGA-TGAGTGCTCCGAGTTTATCGAACACC  184
            ||| ||||||||| | ||||||||||||| | | | |   | |||| |||||||||||||
Sbjct  151  CTGCGATTTCTTTTTACACAAGAAATGTGTCCACTCA---C-CCGAATTTATCGAACACC  206

Query  185  CATGTCACTCC-ATTCACACTCT  206
            ||| |||| || || ||||||||
Sbjct  207  CATCTCACCCCGAT-CACACTCT  228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38618514921


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5