BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09720.3
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1 765 0.0
> Ahg489823 jgi|Araly1|489823|fgenesh2_kg.6__2957__AT4G09720.1
Length=979
Score = 765 bits (414), Expect = 0.0
Identities = 461/484 (95%), Gaps = 1/484 (0%)
Strand=Plus/Plus
Query 545 GCAAGTCCATCAGATCCAAAGACATTTCCGTTTATAGTGCTTGGAAACAAGATTGACGTA 604
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 497 GCAAGTCCATCAGATCCAAAGACATTTCCGTTTATAGTGCTTGGAAACAAGGTTGACGTA 556
Query 605 GATGGAGGGAGCAGTAGAGTGGTCTCTGATAAGAAAGCAGCTGACTGGTGTGCTTCAAAT 664
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 557 GATGGAGGGAGCAGTAGAGTGGTCTCTGAGAAGAAAGCAGCTGACTGGTGTGCTTCAAAT 616
Query 665 GGTAACATACCCTATTTCGAGACATCAGCAAAAGATGACTTCAATGTCGATGAGGCATTC 724
||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 617 GGTAATATTCCCTATTTTGAGACCTCAGCAAAAGAAGACTTCAATGTTGATGAGGCATTC 676
Query 725 TTAACCATTGCCAAAACCGCCCTTGCTAACGAACATGAACAGGATATATACTTCCAAGGC 784
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 677 TTAACCATTGCCAAAACCGCCCTTGCAAACGAACATGAACAGGATATATACTTCCAAGGC 736
Query 785 ATACCAGATGCAGTGACTGAAAACGAGCCAAAAGGCGGTGGTTGCGCTTGCTGAACCACA 844
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 737 ATACCCGATGGAGTGACTGAGAACGAGCCAAAAGGCGGTGGTTGCGCTTGCTGAACCGCA 796
Query 845 GATTTGAGGATTCAATGACATTCGtttttttGATGCATTCATTTGAAGGTTGGTGTACTC 904
|||||||||||||| | ||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 797 GATTTGAGGATTCATTTACATTTGTTTTTTTGATGAATTCA-TTGAAGGTTGGTGTACTC 855
Query 905 TTGAGTTGCAGAACGATAAGCTTGTAGAAGCAATTTTTTGTCATTCCATCATATATTAAT 964
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 856 TTGAGTTGCAGAACGATAAGCTTGTAGAAGCAATTTTTCGCCATTCCATCATATATTAAT 915
Query 965 TGATTGGAGAAGTCTGTGTATGATCAATCGATTCTGCTGGATACAAATTTTATTTTTGTA 1024
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 916 TGATTGGAGAAGTCTCTGTATGATCAATCGATTCTGCTGGATAAAAATTTTATTTTTGGA 975
Query 1025 AGAA 1028
||||
Sbjct 976 AGAA 979
Score = 708 bits (383), Expect = 0.0
Identities = 470/508 (93%), Gaps = 21/508 (4%)
Strand=Plus/Plus
Query 19 TCTCTCTAATTGGCGCTCCTTTACTAAT-TGCCCTTTAATTCCATCCATCTTCGGATTCT 77
|||||||||||||||||||||||||||| | |||||| || ||||||||||||||||
Sbjct 1 TCTCTCTAATTGGCGCTCCTTTACTAATAT-CCCTTT--TT---TCCATCTTCGGATTCT 54
Query 78 TTTCAAATCAACaaaaaaaGTACAAATC-G-GATCCCTACAATATCCTCTCCACTCTTCA 135
||||||||| | | || ||||||||||| | ||||||||||| |||||| ||||| ||||
Sbjct 55 TTTCAAATC-A-ATAAGAAGTACAAATCGGAGATCCCTACAAAATCCTCACCACTGTTCA 112
Query 136 CAAATCCTTCTCCGAGATCT--ACA------AACGCTGTTTCATTCTTCCGATTA-CAAT 186
||| |||||||||||||||| ||| ||| || |||||||||||||| || ||||
Sbjct 113 CAATTCCTTCTCCGAGATCTACACATTCTTTAACTCTCTTTCATTCTTCCGA-TATCAAT 171
Query 187 GGCGACGAGAAGACGTACTTTGCTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGAAA 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 172 GGCGACGAGAAGACGTACTTTGCTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGTAA 231
Query 247 AACCTCCTTGATGAATCAATATGTGCATAAGAAGTTTAGTATGCAGTATAAAGCAACGAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AACCTCCTTGATGAATCAATATGTGCATAAGAAGTTTAGTATGCAGTATAAAGCAACGAT 291
Query 307 TGGTGCTGATTTTGTAACCAAGGAGCTTCAGATTGGGGAAAAGCTTGTTACTTTACAGAT 366
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 292 TGGTGCTGATTTTGTAACCAAGGAGCTTCAGATTGGGGAAAAGCTTGTTACTCTCCAGAT 351
Query 367 TTGGGATACTGCTGGACAAGAGAGATTCCAGAGTCTTGGTGCTGCTTTTTATAGAGGAGC 426
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 352 TTGGGATACTGCTGGACAAGAAAGATTTCAGAGTCTTGGTGCTGCTTTTTACAGAGGAGC 411
Query 427 TGATTGTTGTGCTTTGGTTTATGATGTTAATGTGTTGAGGTCTTTTGATAATCTCGAAAC 486
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 412 TGATTGTTGTGCTTTGGTTTATGATGTTAATGTGTTGAGGTCTTTTGACAATCTCGAAAC 471
Query 487 TTGGCATGAGGAGTTTCTTAAACAGGCA 514
|||||| || ||||||||||||||||||
Sbjct 472 TTGGCACGAAGAGTTTCTTAAACAGGCA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5