BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09730.1
Length=2151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942753 jgi|Araly1|942753|scaffold_603297.1 3003 0.0
> Ahg942753 jgi|Araly1|942753|scaffold_603297.1
Length=1907
Score = 3003 bits (1626), Expect = 0.0
Identities = 1812/1902 (95%), Gaps = 11/1902 (1%)
Strand=Plus/Plus
Query 61 GTAAGAAAAACACGCGCGAAAGCTATGGTAGGAGCTTCAAGAACAATCCTATCCCTATCT 120
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAACAAGAACACGCGCGAAAGCTATGGTAGGAGCTTCAAGAACAATCCTATCCCTATCT 60
Query 121 CTATCATCTTCCCTCTTCACCTTCTCCAAAATCCCTCACGTTTTTCCATTTCTCCGCCTC 180
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTATCATCTTCCCTCTTCACTTTCTCCAAAATCCCTCACGTTTTCCCATTTCTCCGCCTC 120
Query 181 CACAAACCCAGATTCCACCACGCGTTTCGTCCTCTTTACTCCGCCGCCGCAACAACTTCT 240
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 CACAAACCTAGATTCCGCCACGCTTTTCGTCCTCTTTACTCCGCCGCCGCAACAA---CT 177
Query 241 TCTCCGACGACGGAGACTAATGTTACAGATCCGGATCAATTGAAACATACGATCTTACTA 300
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 178 TCTCCGACGACGGAGACGAATGTGACAGATCCGGATCAATTGAAACACACGATTTTGCTT 237
Query 301 GAGAGGCTTAGGCTTCGACATTTGAAAGAATCAGCGAAACCACCACAACAGAGACC-A-- 357
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 238 GAGAGGCTTAGGCTTAGACATTTGAAGGAATCAGCGAAACCACCGCAACAGAGACCGAGT 297
Query 358 AGTAGTGTTGTTGGTGTAGAGGAAGAGAGTAGTATTAGGAAGAAGAGTAAGAAGTTAGTT 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 298 AGTAGTGTTGTTGGTGTAGAGGAAGAGAATAGTATTAGGAAGAAGAGTAAGAAGTTAGTT 357
Query 418 GAGAATTTTCAGGA-ATTGGGTTTAAGTGAAGAAGTTATGGGAGCTTTACAAGAGTTGAA 476
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 358 GAGAATTTTCAGGAGCTTGGG-TTAAGTGAGGAAGTTATGGGAGCTTTACAAGAGTTGAA 416
Query 477 TATTGAGGTTCCTACTGAGATTCAGTGTATCGGAATACCTGCGGTTATGGAACGTAAGAG 536
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 417 TATTGAGGTTCCTACGGAGATTCAGTGTATCGGAATACCCGCGGTTATGGAACGGAAGAG 476
Query 537 CGTTGTATTGGGTTCGCATACCGGTTCTGGCAAGACTCTTGCTTACTTGTTGCCTATTGT 596
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 477 CGTTGTTTTGGGTTCGCATACTGGTTCTGGGAAGACTCTTGCTTACTTGTTGCCTATTGT 536
Query 597 TCAGCTGATGAGAGAAGATGAAGCAAACCTTGGTaaaaaaaCAAAGCCTAGACGTCCCAG 656
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||
Sbjct 537 TCAGCTGATGAGAGAAGATGAGGCAAACCTTGGTAAAAAAACTAAGCCTAGGCGTCCGAG 596
Query 657 GACTGTTGTTCTTTGTCCTACAAGAGAACTATCTGAGCAGGTTTACCGTGTGGCGAAGTC 716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 GACTGTTGTTCTTTGTCCTACAAGAGAATTATCTGAGCAGGTTTACCGTGTGGCGAAGTC 656
Query 717 CATAAGTCATCACGCGAGGTTTAGATCTATATTGGTTAGTGGTGGTTCTCGGATAAGACC 776
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 CATAAGCCATCACGCGAGGTTTAGATCGATATTGGTTAGTGGTGGTTCTCGGATAAGACC 716
Query 777 CCAGGAGGATTCTTTGAACAATGCAATAGATATGGTTGTTGGAACCCCTGGTAGGATTCT 836
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 717 ACAGGAAGATTCTTTGAACAATGCAATAGACATGGTTGTTGGAACCCCTGGTAGGATTCT 776
Query 837 TCAGCATATCGAAGAAGGAAACATGGTGTATGGAGATATCGCATATTTGGTATTGGATGA 896
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 777 TCAGCATATCGAAGAAGGAAACATGGTCTATGGAGATATCGCATATTTGGTGCTGGATGA 836
Query 897 GGCAGATACTATGTTTGATCGTGGCTTTGGTCCCGAAATTCGTAAATTCCTTGCCCCACT 956
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 837 GGCAGACACTATGTTTGATCGAGGCTTTGGTCCCGAGATTCGTAAATTCCTTGCCCCACT 896
Query 957 GAATCAACGTGCGTTGAAAACAAATGACCAAGGATTTCAAACCGTCTTAGTGACTGCTAC 1016
|||||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 897 GAATCAGCGTGCCTTAAAAACCAATGACCAAGGATTTCAAACTGTCTTAGTGACTGCTAC 956
Query 1017 TATGACAATGGCTGTTCAGAAGTTAGTCGATGAGGAGTTTCAAGGGATAGAGCATTTGCG 1076
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TATGACAACGGCTGTTCAGAAGTTAGTCGATGAGGAGTTTCAAGGGATAGAACATTTGCG 1016
Query 1077 TACATCAACACTGCATAAAAAGATAGCAAACGCTCGCCATGACTTCATCAAGCTTTCAGG 1136
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AACATCAACATTGCATAAAAAGATAGCAAACGCTCGCCATGACTTCATCAAGCTTTCAGG 1076
Query 1137 TGGTGAAGATAAGCTAGAAGCACTTCTACAGGTTCTTGAACCTAGCCTAGCCAAAGGGAG 1196
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1077 TGGTGAAGATAAGCTAGAAGCACTTCTACAGGTTCTCGAACCCAGCTTAGCCAAAGGGAG 1136
Query 1197 CAAGGTGATGGTCTTCTGTAACACTTTGAACTCCAGTCGCGCTGTTGATCACTATCTTTC 1256
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1137 CAAGGTGATGGTCTTCTGTAACACTTTGAACTCCAGTCGTGCCGTTGATCACTTTCTTTC 1196
Query 1257 TGAAAACCAGATCTCCACTGTAAATTATCACGGTGAAGTTCCAGCAGAACAAAGGGTTGA 1316
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1197 TGAAAACCAGATCTCCACTGTAAATTATCACGGTGAAGTTCCAGCAGACCAAAGGGTTGA 1256
Query 1317 GAATTTGAAAAAGTTCAAGGACGAAGAAGGAGACTGTCCCACGCTAGTGTGCACGGATTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAATTTGAAAAAGTTCAAGGACGAAGAAGGAGACTGTCCCACGCTAGTGTGCACGGATTT 1316
Query 1377 GGCTGCAAGGGGTCTGGACCTCGACGTTGATCATGTAGTCATGTTTGATTTCCCAAAGAA 1436
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GGCTGCGAGGGGTCTGGACCTCGACGTTGATCATGTAGTCATGTTTGATTTCCCAAAGAA 1376
Query 1437 CTCGATTGACTACCTTCATCGCACTGGAAGAACAGCTCGGATGGGTGCTAAAGGAAAAGT 1496
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTCTATTGACTACCTTCATCGCACTGGAAGAACAGCTCGGATGGGTGCTAAAGGAAAAGT 1436
Query 1497 GACAAGTCTAGTGAGCAGGAAGGACCAAATGTTAGCAGCACGAATCGAAGAAGCAATGAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GACAAGTCTAGTGAGCAGGAAGGACCAAATGTTAGCAGCACGAATCGAAGAAGCAATGAG 1496
Query 1557 AAACAACGAGAGCTTAGAATCACTCACGACTGATAATGTGAGGAGAGACGCCGCAAGAAC 1616
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1497 AAACAACGAGAGCTTAGAATCACTCACCACTGATAATGTGAGGAGAGACGCTGCAAGAAG 1556
Query 1617 CCATATCACTCAAGAGAAAGGAAGAAGCGTTAAGCAGATCAGAGAAGTGAGCAAGCAACG 1676
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1557 CCAAATCACTCAAGAGAAAGGAAGAAGCGTTAAGCAGATGAGAGAAGTAAGCAAGCAACG 1616
Query 1677 AAACTCCAGAGACAAACCATCATCATCATCTCCTCCTGCAAGATCGACAGGTGGGAAGAC 1736
|| ||||||||||||||| || ||||| || | ||||||||||| ||||||||||||||
Sbjct 1617 AATCTCCAGAGACAAACCGTCGTCATC-TC-C-TCCTGCAAGATTAACAGGTGGGAAGAC 1673
Query 1737 ACCCGTGAGAAAGTCAAGTTCAAGTTCGTTTTCGAAACCAAGAAAAGCATCATCTCCTCC 1796
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1674 ACCCGTGAGAAAGTCAAGTTCAAGTTCGTTTTCAAAACCCAGAAAAGCATCATCTCCTCC 1733
Query 1797 AGAGAAATCTTCAAAGCCaaaaagaaaaatattaaaaaCGGTTGGATCCAGATCGATTGC 1856
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TGAGAAATCTTCAAAGCCGAAAAGAAAAATATTAAAAACGGTTGGATCCAGATCGATTGC 1793
Query 1857 TGCGAGGGGGAAGACGGGTTCAGATAGAAGACCAGGAAAGAAACTAAGTGTTGTTGGTTT 1916
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1794 TGCGAGGGGGAAGACGGGTTCAGATAGACGACCAGGAAAGAAACTAAGTGTTGTTGGGTT 1853
Query 1917 CCGGGGCAAGTCTTCTTCGGCAAGAGCCTCTTGATTTACATT 1958
| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 1854 CAGGGGAAAGTCTTCTTCGGCAAGAGCCTTTTGATTTACATT 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80941770625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5