BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09740.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327156 jgi|Araly1|327156|fgenesh1_pm.C_scaffold_6002376 2228 0.0
Ahg492512 jgi|Araly1|492512|fgenesh2_kg.7__1945__AT4G23560.1 2001 0.0
> Ahg327156 jgi|Araly1|327156|fgenesh1_pm.C_scaffold_6002376
Length=1452
Score = 2228 bits (1206), Expect = 0.0
Identities = 1359/1435 (95%), Gaps = 2/1435 (0%)
Strand=Plus/Plus
Query 1 ATGGGCAAACTCTTGGTTG-TAATGTTAATTGGGATGTTCTTGGCTTTCGAAAGCTTGGA 59
|||||||| ||||||| || |||||||| ||||||||||||||||||| |||||||||||
Sbjct 1 ATGGGCAAGCTCTTGG-TGTTAATGTTAGTTGGGATGTTCTTGGCTTTTGAAAGCTTGGA 59
Query 60 AGCTCTTGACTATGGAGATGCACTGAACAAATCAATTTTGTTCTTTGAAGGCCAAAGATC 119
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 60 AGCTCTTGACTATGGAGATGCACTAAACAAGTCAATCTTGTTCTTTGAAGGCCAAAGATC 119
Query 120 TGGTAAACTCCCGACTAATCAAAGGGTTAAATGGCGAGCTGATTCTGGCCTGTCTGACGG 179
||||||||||||||||| ||| ||||||||||||| |||||||||| ||| ||||||||
Sbjct 120 CGGTAAACTCCCGACTAACCAACGGGTTAAATGGCGTGCTGATTCTGCCCTCTCTGACGG 179
Query 180 TGCATCAGCTAATGTGAATTTGATTGGAGGATATTACGATGCTGGTGACAATGTAAAATT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGCATCAGCTAATGTGAATTTGATTGGAGGATATTACGATGCTGGTGACAATGTAAAATT 239
Query 240 TGTGTGGCCAATGTCATTTACCACAACCTTGTTGAGTTGGGCTGCACTTGAATACCAGAA 299
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 240 TGTGTGGCCAATGTCATTTACCACAACCTTATTGAGTTGGGCTGCAATTGAATACCAAAA 299
Query 300 TGAGATTACTTTCGTTAACCAGCTTGGTTATCTCCGGTCTACTATCAAATGGGGAACTAA 359
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 300 TGAGATTACTTCCGTAAACCAGCTTGGTTATCTCCGGTCTACTATCAAATGGGCAACCAA 359
Query 360 TTTTATCCTCCGTGCTCATACGTCGACCAACATGCTATATACACAGGTAGGAGATGGAAA 419
|||||||||||| |||||||| ||| |||||||||||||||| ||||| |||||||||||
Sbjct 360 TTTTATCCTCCGCGCTCATACTTCGCCCAACATGCTATATACTCAGGTGGGAGATGGAAA 419
Query 420 TTCAGATCATAGTTGTTGGGAGAGACCAGAAGATATGGACACACCTAGAACTCTCTATAG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 420 TTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACACCTAGAACTCTCTACAG 479
Query 480 TATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCAGGTGAAGCCGCAGCCGCTCTTGCCGC 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCGGGTGAAGCCGCAGCCGCTCTTGCCGC 539
Query 540 GGCCTCACTTGTTTTCAAACTGGTTGATTCTACATATTCATCCAAATTACTAAACAATGC 599
|||||||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| ||||
Sbjct 540 GGCCTCACTTGTTTTCAAACCGGTCGATTCTACTTATTCATCCAAGTTACTCAACCATGC 599
Query 600 TAAATCCCTATTTGAATTTGCTGATAAGTACAGAGGTTCTTACCAAGCTTCTTGCCCCTT 659
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 600 TAAATCCCTATTCGAATTTGCGGATAAGTACAGAGGTTCTTACCAAGCATCTTGCCCCTT 659
Query 660 CTACTGCTCACACTCAGGCTACCAGGATGAACTTTTGTGGGCTGCGGCTTGGTTATACAA 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTACTGCTCACACTCAGGCTATCAGGATGAACTTTTGTGGGCTGCGGCTTGGTTATACAA 719
Query 720 AGCAACAGGGGAAAAGAGTTACTTAAATTATGTTATAAGCAACAAAGATTGGAGCAAAGC 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 720 AGCAACAGGGGAAAAGAGTTACTTAAATTATGTTATAAGCAATAAAGATTGGAGCCAAGC 779
Query 780 CATCAATGAATTTAGTTGGGACAACAAATTCGCCGGCGTTCAAGCTTTACTCGCATCGGA 839
| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 CGTGAATGAATTTAGCTGGGACAACAAATTCGCCGGTGTTCAAGCTTTACTCGCATCGGA 839
Query 840 GTTTTACAACGGGGCAAATGACTTGGAAAAATTTAAGACCGATGTTGAATCATTCGTCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTTTTACAACGGGGCAAATGACTTGGAAAAATTTAAGACCGATGTTGAATCATTCGTCTG 899
Query 900 TGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGTGGCATTTTGTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGTGGCATTTTGTT 959
Query 960 TATTAGAGACAGTAGCAACTTACAGTATGTAACAACGGCTACAACTATATTATTCTATTA 1019
|||||||||||||||||||||||| ||||||||||||||||||||| | || ||| ||||
Sbjct 960 TATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTTTTGTTCCATTA 1019
Query 1020 CTCAAAAACTCTAACCAAAGCCGGGGTTGGTTCAATCCAGTGTGGGTCGACTCAGTTCAC 1079
|||||||||||| ||||||||| |||||||||||||||| || || ||||| ||||||||
Sbjct 1020 CTCAAAAACTCTTACCAAAGCCCGGGTTGGTTCAATCCAATGCGGTTCGACCCAGTTCAC 1079
Query 1080 CGTATCTCAAATTCGAAATTTTGCCAAGTCACAGGTTGATTACATTCTTGGAAATAATCC 1139
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 CGCATCTCAAATTCGAAATTTCGCCAAATCACAGGTTGATTACATTCTTGGAAATAATCC 1139
Query 1140 ATTGAAAATGTCTTACATGGTTGGATTTGGAACAAAGTATCCTACACAACCTCATCATAG 1199
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1140 ATTGAAAATGTCTTACATGGTTGGATTTGGAACAAAGTACCCAACTCAACCTCATCATAG 1199
Query 1200 AGGCTCGTCATTACCGTCAATCCAATCTAAACCAGAGAAAATCGACTGTAATGGAGGATT 1259
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1200 AGGCTCGTCATTACCGTCAATCCAATCTAAACCGGAGAAAATCGACTGCAATGGAGGATA 1259
Query 1260 TTCATACTACAATTTTGATACACCAAACCCGAATGTGCATACCGGCGCAATTGTGGGCGG 1319
|||||||||||||| ||||||||| ||||||||||| |||||||| ||||| || |||||
Sbjct 1260 TTCATACTACAATTCTGATACACCGAACCCGAATGTCCATACCGGTGCAATCGTTGGCGG 1319
Query 1320 ACCAAATTCATCCGACCAGTATAGCGACAAAAGAACAGATTATTCTCATGCAGAGCCCAC 1379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACCGAATTCATCCGACCAGTATAGCGACAAAAGAACAGATTATTCTCATGCAGAGCCCAC 1379
Query 1380 AACTTACATCAATGCCGCCTTTATTGGGTCAGTCGCTGCTCTGATCAGTTCTTCC 1434
|||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1380 AACTTACATCAACGCCGCCTTTATTGGGCCCGTCGCTGCTCTCATCAGTTCTTCC 1434
> Ahg492512 jgi|Araly1|492512|fgenesh2_kg.7__1945__AT4G23560.1
Length=1689
Score = 2001 bits (1083), Expect = 0.0
Identities = 1324/1441 (92%), Gaps = 14/1441 (1%)
Strand=Plus/Plus
Query 1 ATGGGCAAA-CTCTTGGTTG-TAATGTTAATTGGGATGTTCTTGGCTTTCGAAAGCTTGG 58
||||| ||| ||||||| || |||||||| || |||||| |||||||||||||||||||
Sbjct 72 ATGGG-AAAGCTCTTGG-TGTTAATGTTAGTTATGATGTTTTTGGCTTTCGAAAGCTTGG 129
Query 59 AAGCTCTTGACTATGGAGATGCACTGAACAAATCAATTTTGTTCTTTGAAGGCCAAAGAT 118
|||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 130 AAGCTCTTGATTACGGAGATGCACTAAACAAGTCAATCTTGTTCTTTGAAGGCCAAAGAT 189
Query 119 CTGGTAAACTCCCGACTAATCAAAGGGTTAAATGGCGAGCTGATTCTGGCCTGTCTGACG 178
| ||||||||||||||||| ||| |||||||||||||||| ||||||| ||| ||||| |
Sbjct 190 CCGGTAAACTCCCGACTAACCAACGGGTTAAATGGCGAGCCGATTCTGCCCTCTCTGATG 249
Query 179 GTGCATC-AGCTAATGTGAATTTGATTGGAGGATATTACGATGCTGGTGACAATGTAAAA 237
|| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 250 GTTCA-CTAGCTAATGTGAATTTAATTGGAGGATATTACGATGCTGGTGACAATGTAAAA 308
Query 238 TTTGTGTGGCCAATGTCATTTACCACAACCTTGTTGAGTTGGGCTGCACTTGAATACCAG 297
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 309 TTTGTGTGGCCAATGTCATTTACCACAACCTTGTTGAGTTGGGCAGCAATTGAATACCAA 368
Query 298 AATGAGATTACTTTCGTTAACCAGCTTGGTTATCTCCGGTCTACTATCAAATGGGGAACT 357
||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 369 AATGAGATTTCTTCCGTTAACCAGCTCGGTTATCTCCGGTCTACTATCAAATGGGGTACC 428
Query 358 AATTTTATCCTCCGTGCTCATACGTCGACCAACATGCTATATACACAGGTAGGAGATGGA 417
||||||||||||| |||||| | ||| ||| |||||||||||||||||| ||||||||
Sbjct 429 GATTTTATCCTCCGCGCTCATGCTTCGCCCACCATGCTATATACACAGGTGGGAGATGGG 488
Query 418 AATTCAGATCATAGTTGTTGGGAGAGACCAGAAGATATGGACACACCTAGAACTCTCTAT 477
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 489 AATTCAGATCATAGTTGTTGGGAGAGGCCAGAAGATATGGACACACCAAGAACTCTCTAC 548
Query 478 AGTATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCAGGTGAAGCCGCAGCCGCTCTTGCC 537
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 549 AGTATCTCTTCCTCTTCCCCCGGTTCCGAAGCCGCGGGTGAAGCAGCAGCCGCTCTTGCC 608
Query 538 GCGGCCTCACTTGTTTTCAAACT-GGTTGATTCTACATATTCATCCA-AATTACTAAACA 595
|| |||||||||||||||||| | ||| |||||||| |||||||||| || |||| |
Sbjct 609 GCAGCCTCACTTGTTTTCAAA-TCGGTCGATTCTACTTATTCATCCACGCTT-CTAAGCC 666
Query 596 ATGCTAAATCCCTATTTGAATTTGCTGATAAGTACAGAGGTTCTTACCAAGCTTCTTGCC 655
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 667 ATGCTAAATCCCTATTTGAATTTGCTGATAAGTATAGAGGTTCTTACCAAGCATCTTGCC 726
Query 656 CCTTCTACTGCTCACACTCAGGCTACCAGGATGAACTTTTGTGGGCTGCGGCTTGGTTAT 715
| |||||||||||| |||| ||||||||||||||||| || |||||||| |||||||||
Sbjct 727 CTTTCTACTGCTCATACTCTGGCTACCAGGATGAACTATTATGGGCTGCTACTTGGTTAT 786
Query 716 ACAAAGCAACAGGGGAAAAGAGTTACTTAAATTATGTTATAAGCAACAAAGATTGGAGCA 775
||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 787 ACAAAGCAACAGGAGAGAAGAGTTACATAAATTATGTTATAAGCAATAAAGATTGGAGCC 846
Query 776 AAGCCATCAATGAATTTAGTTGGGACAACAAATTCGCCGGCGTTCAAGCTTTACTCGCAT 835
||||| | |||||||| || |||||||||||||||||||| | ||| ||||| |||||||
Sbjct 847 AAGCCGTGAATGAATTCAGCTGGGACAACAAATTCGCCGGTGCTCAGGCTTTGCTCGCAT 906
Query 836 CGGAGTTTTACAACGGGGCAAATGACTTGGAAAAATTTAAGACCGATGTTGAATCATTCG 895
|||||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 907 CGGAGTTTTATAATGGGACAAATGACTTGGCAAAATTTAAGACCGATGTTGAATCATTCG 966
Query 896 TCTGTGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGTGGCATTT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 TCTGTGCATTGATGCCAGGAAGTAGCTCTCAACAAATTAAGCCAACTCCTGGTGGCCTTT 1026
Query 956 TGTTTATTAGAGACAGTAGCAACTTACAGTATGTAACAACGGCTACAACTATATTATTCT 1015
|||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 1027 TGTTTATTAGAGACAGTAGCAACTTACAATATGTAACAACGGCTACAACTGTTTTGTTCC 1086
Query 1016 ATTACTCAAAAACTCTAACCAAAGCCGGGGTTGGTTCAATCCAGTGTGGGTCGACTCAGT 1075
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct 1087 ATTACTCAAAAACTCTTACCAAAGCCCGGGTTGGTTCAATCCAGTGTGGTTCGACCCAGT 1146
Query 1076 TCACCGTATCTCAAATTCGAAATTTTGCCAAGTCACAGGTTGATTACATTCTTGGAAATA 1135
||||| ||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 1147 TCACCCTATCTCAAATTCGAAATTTCGCCAAATCACAGGTCGATTACATCCTTGGAAATA 1206
Query 1136 ATCCATTGAAAATGTCTTACATGGTTGGATTTGGAACAAAGTATCCTA-CACAACCTCAT 1194
||||| ||||||||||||||||||||||||||||||| |||| ||| | |||||||||||
Sbjct 1207 ATCCAATGAAAATGTCTTACATGGTTGGATTTGGAACCAAGT-TCCCAACACAACCTCAT 1265
Query 1195 CATAGAGGCTCGTCATTACCGTCAATCCAATCTAAACCAGAGAAAATCGACTGTAATGGA 1254
||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1266 CATAGAGGCTCATCTTTACCGTCGATCCAATCTAAACCGGAGAAAATCGACTGCAATGGA 1325
Query 1255 GGATTTTCATACTACAATTTTGATACACCAAACCCGAATGTGCATACCGGCGCAATTGTG 1314
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GGATATTCATACTACAATTCTGATACACCAAACCCGAATGTGCATACCGGCGCAATTGTG 1385
Query 1315 GGCGGACCAAATTCATCCGACCAGTATAGCGACAAAAGAA-CAGATTATTCTCATGCAGA 1373
|||||||| |||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 1386 GGCGGACCGAATTCATCCGACCAGTATAGCGACAAAA-AATCAGATTACTCTCATGCAGA 1444
Query 1374 GCCCACAACTTACATCAATGCCGCCTTTATTGGGTCAGTCGCTGCTCTGATCAGTTCTTC 1433
|||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||
Sbjct 1445 GCCCACAACTTACATCAACGCAGCCTTTATTGGGCCCGTCGCTGCTCTGATCAGTTCTTC 1504
Query 1434 C 1434
|
Sbjct 1505 C 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5