BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09770.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489831 jgi|Araly1|489831|fgenesh2_kg.6__2965__AT4G09770.1 1334 0.0
> Ahg489831 jgi|Araly1|489831|fgenesh2_kg.6__2965__AT4G09770.1
Length=1058
Score = 1334 bits (722), Expect = 0.0
Identities = 872/943 (92%), Gaps = 16/943 (2%)
Strand=Plus/Plus
Query 166 ATG-GAGATTGATATTTTACCCGGCTGGAAAGTTAGAAGAAGGTGGAAAAGACCATGTTT 224
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 122 ATGAGAGATTGATATTTTACCCGGCTGGAAAGGTAGAAGAAGGTGGAAAAGACCATGTTT 181
Query 225 CGATTTATGCGAGGATCGAAAATGTTGGTGCTTCT---ATGCAGATTGATGCT-GAACTC 280
||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||
Sbjct 182 CGATTTATGCGAGGATCGACAATGTTGGTGCTTCTGAGATGCAGATTGATG-TAGAACTC 240
Query 281 AAGTTCTTCATCTACAATCACAACAACAAGCAATACTCTGTCTTT-CAAGATGGAACTAT 339
||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||
Sbjct 241 AAGTTCTTCATCTACAATCACAACATCAAGAAATACTCTGT-TTTCCAAGATGGAACTAT 299
Query 340 GAAGCATTACAATAAGGAGAAAAAAGAGTGTGGATTTGCGCAAATGCTTCTTTTTTCGAA 399
||||||||| | |||||||||||||||||| ||||| || |||||||||||| |||||||
Sbjct 300 GAAGCATTATAGTAAGGAGAAAAAAGAGTGGGGATTAGCACAAATGCTTCTTCTTTCGAA 359
Query 400 GTTCAACGACCCAAAGAATGGGTACATCGATGGAAATGCTTGTATCGTTGGGGTGGAGAT 459
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTTAACGACCCAAAAAATGGGTACATCGATGGAAATGCTTGTATCGTTGGGGTGGAGAT 419
Query 460 ATTCGTTATAAAGCCGATAGAGAAGGTGGAGAGGGTTGTATTCACACAAAACCCACCAGA 519
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 420 ATTCGTTATAAAGCCGAGAGAGAGGGTGGAGAGGGTTGCATTCACACAAAACCCACCAAA 479
Query 520 AAACAAATTCACGTGGAAAATCTCTCATTTCTCATATATAGGAGACAAGAGATACTATTA 579
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 480 AAACAAATTCACCTGGAAAATCTCTCATTTCTCAGAAATAGGAGACAAGAGATATTATTA 539
Query 580 TTCAGATGAATTTGTGGTCGGAGATAGAAAATGGAGATTGAAGATTAGTCCAAAGGGAGA 639
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 CTCGGATGAATTTGTGGTCGGAGATAGAAAATGGAGAATGAAGATTAGTCCAAAGGGAGA 599
Query 640 CAAAAAGGTAAGAGCACTTTCAGTTTATGTACAAGCCATGGCATATCTGCCAAATGCGGT 699
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 600 CAAAAAGGTAAGAGCACTTTCAGTCTATGTTCAAGCCATGGCATATCTGCCAAATGCGGT 659
Query 700 AGCTTCTAGCACTTATGCAAAGCTCAGACTTCGGCTACTAAATCAGAAAAACTCTAACCA 759
||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 660 AGCTTCTAGCACTTACGCAAAGCTCAAACTTCGTCTAATAAATCAGAAAAACTCTAACCA 719
Query 760 CATTGAGAAACGCGTTTTTCATTTTTACTCGAGAGAGAA-TGGAGACGGATCAGGGATAT 818
||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||
Sbjct 720 CATTGAGAAACGCGTTTTTCATTTTTATTCGAGAGA-AACTCAAGACGGATCAGGGATAT 778
Query 819 CTGAGTTAATATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACT 878
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGGAGTTAATATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACA 838
Query 879 CCATTGTTCTTGAAACTACTCTTCTTTGGGTCTCTGACACTAAGGTCGTTGACTCTATCT 938
|||||||||||||||||||||| ||||| |||||||| || | | | || ||||||||||
Sbjct 839 CCATTGTTCTTGAAACTACTCTGCTTTGTGTCTCTGAGACGATGTTTGTCGACTCTATCT 898
Query 939 AAAGACTCCTATTACCTCTTTCTTTCTTTTGCATACATCTTTCTTTTTTAAGCAACAAAA 998
|| ||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 899 AATGACTCTTATTACCTCTCTCTTTCTTT-GCATACATCTTTCTTTTGTAAGCAACAAAA 957
Query 999 TGTCTTCTTTGCTATTTCCCCtttttttttttttttt-tt-tttttttagtttgttaaat 1056
|||| ||| ||||||| | |||| |||| | |||| || |||||||||||||||||||
Sbjct 958 AGTCTCCTTCGCTATTTTC--TTTTCTTTTCTGTTTTATTGTTTTTTTAGTTTGTTAAAT 1015
Query 1057 tttttgatgtt-ttgttgACTGATTATGTAAGAATCTTTGTAC 1098
| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1016 ATATTGATGTTATTGTTGACTGATTATGTAAGAATCTTTGTAC 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5