BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09790.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923074 jgi|Araly1|923074|scaffold_104355.1 843 0.0
Ahg929891 jgi|Araly1|929891|scaffold_302348.1 287 1e-76
Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1 231 7e-60
Ahg937320 jgi|Araly1|937320|scaffold_501511.1 134 2e-30
Ahg925736 jgi|Araly1|925736|scaffold_201297.1 56.5 4e-07
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 54.7 2e-06
> Ahg923074 jgi|Araly1|923074|scaffold_104355.1
Length=1079
Score = 843 bits (456), Expect = 0.0
Identities = 571/623 (92%), Gaps = 21/623 (3%)
Strand=Plus/Plus
Query 557 TTGAAGTCTAA-TGCATGGAGGGTTCTTGATGCCACTCCTGACTGGGAGATAGATTCTTA 615
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TTG-AGTCTAACT-CATGGAGGGTTCTTGATGCCACTCCTGACTGGGAGATAGATTCTTA 527
Query 616 TCAACGTGGCGTGTCTTTGAAA-GGAAATACTTACTTTTTTGCTAAAGAGAAAATAGTGG 674
|||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 528 TCAACGTGGCGTGTCTTT-AAACGGAAATACTTATTTTTTTGCTAAAGAAAAAATAGTGG 586
Query 675 TGGAAGGGG-ATGATGTTGTAGTGA-T--TGAAGATTTCAAAGATTTTTTGATCTGTTTT 730
||||||||| | |||| ||||||| | |||||| |||||||||| ||||||||||||
Sbjct 587 TGGAAGGGGAAAGATG-GGTAGTGATTGATGAAGAGGTCAAAGATTTCTTGATCTGTTTT 645
Query 731 GATTTTACAAGTGAGAGATTTAATTTGGACCACGTCTGCCTCTACCGTTTCACTCTTACA 790
||||||||||||||||| ||||| ||| ||||| ||||| |||||| ||||||||
Sbjct 646 GATTTTACAAGTGAGAG-----ATTTGAACCGCGTCTTCCTCTGCCGTTTTACTCTTACG 700
Query 791 ATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAGCAGCTAGCAGTGTTATATCAGC 850
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 701 ATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGACCAGCTTGCAGTGTTATATCAGC 760
Query 851 AGGATACTTGTTTGATGGAGATATGGGTTACGAATAAGATTGAACCGGATGTGGTGTCAT 910
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 GGGATACTTGTTTGATGGAGATATGGGTTACGAATAAGATTGAGCCGGATGTGGTGTCAT 820
Query 911 GGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCACTCACTGGTTCT-TTTATCCCGTTT 969
||||||||||||| ||||||||||||||| ||||||||||||||||| | || ||||||
Sbjct 821 GGAGCAAGGTGTTCTTAGCAGTGGATATGAAACCACTCACTGGTTCTCATCAT-CCGTTT 879
Query 970 GCTTTTTTCGCTGGGAGTTTCTTCATTGACGAGGAGaaaaaaaTCGCTGTGGTATTCGAT 1029
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GCTTTTTACGCTGGGAGTTTCTTCATTGACGAGGAGAAAAAAATCGCTGTGGTATTCGAT 939
Query 1030 AAAGACCAAGAGGAGATCAACGACAGAGCTTACCTGATTGGAGAGAATGGATACTACAAA 1089
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAAGACAAAGAGGAGATCAACGACAGAGCTTACCTGATTGGAGAGAATGGATACTACAAA 999
Query 1090 GAAGTGGATCTTGGATACATGAATGGATACTACCAACAACAAGTAGATCCTAGGGGACCT 1149
|||||||||||||||||| ||||||||||||||||| | |||||||||| || | | |||
Sbjct 1000 GAAGTGGATCTTGGATACCTGAATGGATACTACCAA-A-CAAGTAGATCTTATGAGCCCT 1057
Query 1150 GATCC-AGTTTTCCCTCTCGTGT 1171
|| | | ||| |||||||||||
Sbjct 1058 AATACTA-TTTACCCTCTCGTGT 1079
Score = 484 bits (262), Expect = 5e-136
Identities = 329/359 (92%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 100 TGGAACACTATATCCAAAGATCCGAGCTTTGCGAAGACGCACTTTGGTAAAGCGGCGAGA 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 TGGAACACTATATCCAAAGATCCGAGCTTTGCGAAGACGCACTTTGGTAAAGCGGCGAGA 159
Query 160 CAGTTTATTATGATGTCTCAATCGAGGGTTTCGTTGATGAGCGTAAAACTCCATGGAGAC 219
||||| |||||| ||||| ||| ||||||| ||||||||| |||||| |||| ||||||
Sbjct 160 CAGTTAATTATGTTGTCTGAATTTAGGGTTTGGTTGATGAGTGTAAAATTCCAAGGAGAC 219
Query 220 GGTAACGAGGACGAGTTGGCCGATCCATATATATATGAAGGGTATAGGTAAGCTTACAAG 279
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 220 TGTGACGAGGACGAGTTGGCCGATCCATATAT----GAAGGGTATAGGTAAGCTTACAAG 275
Query 280 CCTAAACAATTTAGATCAAGTGGAGATATCAAAAGTGTTTCACTGCAACGGCTTACTCTT 339
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 276 CCTAAACAATTTAGATCAAGTGGAGATATCAAAAGTTTTTCACTGCAACGGCTTACTCTT 335
Query 340 GTGCCTGACCAAGGACAAGACTAGGCTCACTAGCCTCGTGGTATGGAACCCGTATTTGGG 399
||| ||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 336 ATGCTTGACCAAGGACAAGACTAGGCTC----G--T-G-G-TATGGAACCCGTATTTGGG 386
Query 400 ACAAACCAGGTGGATCAAACCCAGACACGCTTTCCACAGATTAGACGTGTATGCTCTAG 458
||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 387 ACAAACCAGGTCGATCGAACCCAGAAACGCTTTCCACAGATTAGACGTGTATGCTCTAG 445
> Ahg929891 jgi|Araly1|929891|scaffold_302348.1
Length=1220
Score = 287 bits (155), Expect = 1e-76
Identities = 571/762 (75%), Gaps = 67/762 (9%)
Strand=Plus/Plus
Query 367 CACTAGCCTCGTGGTATGGAACCCGTATTTGGGACAAACCAGGTGGATCAAACCCAGACA 426
||||||||||||||| |||||||||||| || | ||||||||||||||| ||||| || |
Sbjct 363 CACTAGCCTCGTGGTCTGGAACCCGTATATGTGTCAAACCAGGTGGATCCAACCCCGA-A 421
Query 427 -CGCTTTCCACAGATTAGACGTG-TATGCTCTAGGATACGACAAAAACTTGAAAAACCAT 484
||||| | ||||||| ||| | |||||| | ||||||||||| ||| | |||||
Sbjct 422 GCGCTTACGACAGATTTGAC-AGCTATGCTATCGGATACGACAACAAC-CG--TAACCAG 477
Query 485 AAAATCTTGAGGTTTGTGGAT-AGTTA-CGAACCT-G-CTGTGAAGCATTCTATTATAGA 540
||||| ||||||||||||||| | | | ||| | | | | || || | || | |
Sbjct 478 AAAATATTGAGGTTTGTGGATCA-TCATGGAA--TAGAC-GGGACCCA--C-GTTTTTGG 530
Query 541 ACACGAAATTTTTGATTTGAAGTCTAATGCATGGAGGGTTCTTGATGCCACTCCTGACTG 600
||||||| | ||| || ||||||||| ||||||||||||||||| |||||| | ||
Sbjct 531 GTACGAAATCTATGAGTTAAAGTCTAATTCATGGAGGGTTCTTGATATCACTCCCGGTTG 590
Query 601 GGAGATAGA-TTCTTATCAACGTGGCGTGTCTTTGAAAGGAAATACTTACTTTTTTGCTA 659
||| ||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 591 GGATATAGAGTT-TTATCAACGTGGCGTGTCTTTGAAGGGAAACACTTACTTTTTTGCTA 649
Query 660 AAGAGAAAATAGTGGT-GGAAGGGGATGATGTTGTAGTGATTGA-AGATTT-CAAAGATT 716
|||||||||||||| | ||| | || ||| | || ||| | ||| | | ||||
Sbjct 650 AAGAGAAAATAGTGTTCGGA-GA--AT-ATG--G-AGAGAT-GCCAGAGCCGCCA-GATT 700
Query 717 TTTTGA-TCTGTTTTGATTTTACAA-GTGAGAGATTTAATTTGGACCACGT--CTGCCTC 772
||| | | |||||||||||||| | | ||||| ||| |||| | || || ||||
Sbjct 701 ATTT-ACTTTGTTTTGATTTTACGACG-GAGAGCTTT-----GGAC-A-GTATCTTCCTC 751
Query 773 TACCGTTTCA-CTCTTACAATGGAGAGACCGTGACTCTTTCT-AGTGTTAGAGAAGAGCA 830
|||||||| | | ||| | || ||| || | |||||| ||| | ||||| || |||| |
Sbjct 752 TACCGTTTGAGCA-TTATATTGAAGATACTGGGACTCTATCTTA-TGTTAAAGGAGAGAA 809
Query 831 GCTAGCAGTGTTATATCAG--CAGGA-TACTTGTTTGATGGAGATATGGGTTACGAA-TA 886
|| || | |||||||||| || || ||| | | | |||||||||||||||| || ||
Sbjct 810 ACTCGCGGCGTTATATCAGAACATGAGTACATATGAGTTGGAGATATGGGTTAC-AAGTA 868
Query 887 AGATTGAACCGGATGTGGTGTCATGGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCAC 946
|||||| || |||||||||| ||||| || ||||| | ||| |||||| ||||||
Sbjct 869 TGATTGAGCCTAATGTGGTGTCGTGGAGAAACTTGTTTA-A--AGTTGATATGAAACCAC 925
Query 947 TCACTGGTTCT---TTTATCCCGTTTGCTTTTTTCGCTGGGAGTTTCTTCATTGACGAGG 1003
|||||||| | ||| || ||||| || |||| || |||||||| ||||| |
Sbjct 926 ACACTGGTT-TGGGTTT-TCA-GTTTGAGGTTGAATCTGGAAGCTTCTTCATCGACGAAG 982
Query 1004 AGaaaaaaaTCGCTGTGGTATTCGATAAAGACCAAGAGGAGATCAACGACA-GAGCTTAC 1062
|||| ||| |||| || || || ||| ||| || | | | || | | | ||||||
Sbjct 983 AGAAGAAAGTCGCAGTCGTTTTTGATCTAGATGAATCTCAAAGCTACAAAACG-GCTTAC 1041
Query 1063 CTGATTGGAGAGAATGGATACTACAAA-GAAGTGGATCTTGG 1103
| ||||||||||||||||||| ||| || ||| |||||||
Sbjct 1042 ATCATTGGAGAGAATGGATACTTGAAAAGA-GTGAATCTTGG 1082
> Ahg479216 jgi|Araly1|479216|fgenesh2_kg.3__1917__AT3G17400.1
Length=1119
Score = 231 bits (125), Expect = 7e-60
Identities = 386/505 (76%), Gaps = 46/505 (9%)
Strand=Plus/Plus
Query 543 ACGAAATTTTTGATTTGAAGTCTAA-TGCATGGAGGGTTCTTGATGCCAC-TCCTGACTG 600
||||||| | || || || ||||| | |||||||||||||||||| ||| ||| |||||
Sbjct 500 ACGAAATCTACGAGTTAAACTCTAACT-CATGGAGGGTTCTTGATGTCACTTCC-GACTG 557
Query 601 GGAGATAGAT-TCTTAT-CAACGTGGCGTGTCTTTGAAAG-GAAATACTTACTT-TTTTG 656
| | ||| | | || | | || ||||||| || | ||| |||||||||| || ||||
Sbjct 558 GCATATA-CTGTTTTTTGC-ACATGGCGTGACTCT-CAAGAGAAATACTTA-TTGGTTTG 613
Query 657 CTAAAGAGAAAATAGTGGTGGAAGGGGATGATGTTGTAGTGATTGAAGATTTCAAAGATT 716
|| |||| || || | | | ||| ||| | | || | | ||| ||| || |
Sbjct 614 CTTTAGAG-AAGTA-TCGAGAAAGAAGATCA--ACG--GT-A--G-AGA-TTC-CTGACT 661
Query 717 TTTTGATCTGTTTTGATTTTACAAGTGAGAGATTTAA--TTTGGACCACGTCTGCCTCTA 774
| ||||| |||||||||||||||| | ||| || |||||||| ||||| | |||
Sbjct 662 TCTTGATATGTTTTGATTTTACAA---A-AGA---AAGGTTTGGACCGCGTCTTCGTCTG 714
Query 775 CCGTTTCACTCTTACAATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAGCAGCTA 834
||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 715 CCGTTTCGCTCTTATGATGAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACTT 774
Query 835 GCAGTGTTATATCAGC---AGGA-TACTT-GTTTGATGGAGATATGGGTTACGAATAAGA 889
|| ||||||| ||||| |||| |||| || ||||||| |||||||||| |||||
Sbjct 775 GCTGTGTTATTTCAGCGTGAGGACAACTTACATT--TGGAGATTTGGGTTACGACTAAGA 832
Query 890 TTGAACCGGATGTGGTGTCATGGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCACTCA 949
|||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 833 TTGAGCCTGAAGTGGTGTCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGAACCACTCA 892
Query 950 CTGGTTCTTTTATCCCGTTTGCTTTTTTCGCTGGGAGTTTCTTCATTGACGAGGAGaaaa 1009
||| || || || || | || | |||||||||||||||||||| ||||| |
Sbjct 893 CTGATT-TTCAAT----TTGGAGTTACAGGA-GGGAGTTTCTTCATTGACGAAGAGAAGA 946
Query 1010 aaaTCGCTGTGGTATTCGATAAAGA 1034
|| ||||||| || || ||||||||
Sbjct 947 AAGTCGCTGTAGTTTTTGATAAAGA 971
> Ahg937320 jgi|Araly1|937320|scaffold_501511.1
Length=1211
Score = 134 bits (72), Expect = 2e-30
Identities = 296/398 (74%), Gaps = 40/398 (10%)
Strand=Plus/Plus
Query 543 ACGAAATTTTTGAT-TTGAAG-TCTAATGCATGG-AGGGTTCTTGATGCCACTCCTGACT 599
||||||| | |||| || || ||| || |||| || || ||| || |||||| || |
Sbjct 482 ACGAAATCTATGATCTT--AGCTCTGATTTATGGAAGTTTTATTG-TGTCACTCCCGATT 538
Query 600 GGGAGATAGATTCTTATCAACGTGGCGTGTCTTTGAAAGGAAATA-CTTACTTTTTT-GC 657
|||||||| ||| |||||||||| ||||||||||| ||| ||| | || |||||| |
Sbjct 539 GGGAGATACCGTCTCATCAACGTGGTGTGTCTTTGAAGGGAGATAGC-TA-TTTTTTGGG 596
Query 658 T-A-AAG-AGAAAATAGTG-GTGGAAGGGGATGATGTTGTAGTGATTG-AAGATTTCAAA 712
| | || ||| || |||| |||| ||| || | | || || || | |||| || ||
Sbjct 597 TCATGAGAAGATAACAGTGAGTGG-AGGAGAAG-GGGTG-AG-GA--GAAAGA-TT-GAA 648
Query 713 GATTTTTTGA-TCTGTTTTGATTTTACAAGTGAGAGATTTA-ATTTGGACCA-CGTCTGC 769
||| ||| | ||||||||||||||||||||||||||||| | | || | |||||
Sbjct 649 GATAGTTT-ACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACC-GCCCCTGCCTCTGC 706
Query 770 CTCTACCGTTTCACTCTTA-CAATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAG 828
|||| ||||||||||||| | | ||| || ||||||| ||| ||||| |||| |||
Sbjct 707 CTCTTTCGTTTCACTCTTATCGTTC-AGAAACTATGACTCTGTCTTGTGTTGGAGAGGAG 765
Query 829 CAGCTAGCAGTGTT-A-T-ATCAGCAGGAT--A-CTTGT-T-TGATGGAGATATGGGTTA 880
||||| || ||||| | | | || | | || | || | | | ||| |||| |||||||
Sbjct 766 CAGCTCGCCGTGTTTAGTTACCACCTGAATTTATCTAGCGTAT-ATG-AGATTTGGGTTA 823
Query 881 CGAATAAGATTGAACCGGATGTGGTGTCATGGAGCAAG 918
|||||||| ||||||| ||| |||||| |||||||||
Sbjct 824 CGAATAAGCTTGAACCCAATGCGGTGTCCTGGAGCAAG 861
> Ahg925736 jgi|Araly1|925736|scaffold_201297.1
Length=1231
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 722 ATCTGTTTTGATTTTACAAGTGAGAGATTT 751
||||||||||||||||||||||||||||||
Sbjct 741 ATCTGTTTTGATTTTACAAGTGAGAGATTT 770
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 722 ATCTGTTTTGATTTTACAAGTGAGAGATT 750
|||||||||||||||||||||||||||||
Sbjct 703 ATCTGTTTTGATTTTACAAGTGAGAGATT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5