BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09800.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1 1155 0.0
Ahg473557 jgi|Araly1|473557|fgenesh2_kg.1__3511__AT1G34030.1 612 1e-174
Ahg472522 jgi|Araly1|472522|fgenesh2_kg.1__2476__AT1G22780.1 538 2e-152
> Ahg489832 jgi|Araly1|489832|fgenesh2_kg.6__2966__AT4G09800.1
Length=693
Score = 1155 bits (625), Expect = 0.0
Identities = 671/693 (97%), Gaps = 4/693 (1%)
Strand=Plus/Plus
Query 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGCGATCGTTTATTGCTTGA 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGAGATCGTTTATTGCTTGA 60
Query 61 AGACGGCTTCTTCTTC-TC--ACAAACCTCATCTCTGCTAATCAAAATGTCTCTGGTTGC 117
|||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 AGACGGCTTCTTCTTCTTCTAACAAATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGC 120
Query 118 AAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTAATGTTGATGGTAAGCAGAA 177
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 AAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAATGTTGATGGTAAGCAGAA 180
Query 178 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGTAGGCGATTGGCTAACATTGTCTG 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTG 240
Query 238 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 300
Query 298 TAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 360
Query 358 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCTCTTGACAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 361 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCACTGGACAT 420
Query 418 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCACCGTGGTTTGAGGCA 477
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 421 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCA 480
Query 478 TTACTGGGGTCTCCGTGTCAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 537
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTACTGGGGTCTCCGTGTGAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 540
Query 538 TGTTGGTGTCTCAAAGAAGCGTTAA-GAAAGATCCAATGTTGCTACTTACTTCTGTATTG 596
||||||||| ||||||||||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 541 TGTTGGTGTGTCAAAGAAGCGTTAAAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTG 600
Query 597 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 660
Query 657 AGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 689
||||||||||||||||||||||||||||||||
Sbjct 661 GGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 693
> Ahg473557 jgi|Araly1|473557|fgenesh2_kg.1__3511__AT1G34030.1
Length=564
Score = 612 bits (331), Expect = 1e-174
Identities = 430/478 (90%), Gaps = 6/478 (1%)
Strand=Plus/Plus
Query 89 TCTCTGCTAA-TCAAAATGTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTT-CGTG 146
||||| | || ||| |||||||||||| |||||||||||||| || |||||| || ||||
Sbjct 50 TCTCTAC-AATTCACAATGTCTCTGGTAGCAAATGAGGAGTTCCAGCACATT-TTGCGTG 107
Query 147 TGTTGAATACTAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTATCAAAG 206
|| | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 108 TGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTATCAAAG 167
Query 207 GTATTGGTAGGCGATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAA 266
||||||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| |
Sbjct 168 GTATTGGGAGGCGATTGGCCAACATTGTTTGCAAAAAAGCCGATGTCGACATGAACAAGA 227
Query 267 GGGCTGGTGAGTTATCTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCAAACCC-A 325
||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |
Sbjct 228 GGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAACCCGA 287
Query 326 CGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAG 385
| ||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||||||
Sbjct 288 -GACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGACTACAAGGACGGCAAG 346
Query 386 TATTCTCAAGTTGTCTCCAATGCTCTTGACATGAAGCTGAGAGATGATCTTGAACGTCTC 445
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 347 TACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAACGTCTC 406
Query 446 AAGAAGATCAGAAACCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGTCAGAGGACAA 505
||||| |||||||||||||||||| |||| ||||||||||||||||| ||| | ||||||
Sbjct 407 AAGAAAATCAGAAACCACCGTGGTCTGAGACATTACTGGGGTCTCCGAGTCCGTGGACAA 466
Query 506 CACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAAG 563
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 467 CACACCAAGACCACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTAAG 524
> Ahg472522 jgi|Araly1|472522|fgenesh2_kg.1__2476__AT1G22780.1
Length=768
Score = 538 bits (291), Expect = 2e-152
Identities = 413/472 (88%), Gaps = 8/472 (2%)
Strand=Plus/Plus
Query 101 AAAATGTCTCTGGTTGCAAATGAGGAGTTTCAACACATTCTT-CGTGTGTTGAATACTAA 159
||||||||||| ||||| || ||||||||||| || ||| || |||||| | || |||||
Sbjct 131 AAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATT-TTGCGTGTGCTCAACACTAA 189
Query 160 TGTTGATGGTAAGCAGAAGATTATGTTTGCCCTT-ACCTCTATCAAAGGTATTGGTAGGC 218
||| ||||| ||||| ||||||||||||| |||| ||||| ||||| |||||||| ||||
Sbjct 190 TGTCGATGGGAAGCAAAAGATTATGTTTG-CCTTGACCTCGATCAAGGGTATTGGAAGGC 248
Query 219 GATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGT 278
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 249 GATTGGCCAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAAC 308
Query 279 TATCTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGA 338
|| |||||| || || || |||||||||||||||||||| ||||| |||||||||||||
Sbjct 309 TAAGTGCTGCAGAAATCGACAACCTCATGACAATCGTTGCGAACCCTCGTCAGTTCAAGA 368
Query 339 TCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTG 398
||||||||||||||||||||||||| ||||||||||| ||||| || || || |||||||
Sbjct 369 TCCCAGACTGGTTCTTGAACAGGCAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTG 428
Query 399 TCTCCAATGCTCTTGACATGAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAA 458
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 429 TTTCCAATGCTCTGGACATGAAGCTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGGA 488
Query 459 ACCACCGTGGTTTGAGGCATTACTGGGGTCTCCGTGT-CAGAGGACAACACACCAAGACT 517
|||| |||||| ||||||| ||||||||||||||||| | | ||||| |||||||| ||
Sbjct 489 ACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGTAC-GTGGACAGCACACCAAAACC 547
Query 518 ACTGGTCG-CAGAGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAAGAAAGA 568
|| || || | | |||||||||||||||||||| |||||||||||| |||||
Sbjct 548 ACCGGACGAC-GTGGAAAGACTGTTGGTGTCTCCAAGAAGCGTTAAAAAAGA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5