BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G09810.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489833 jgi|Araly1|489833|fgenesh2_kg.6__2967__AT4G09810.1 1375 0.0
Ahg473556 jgi|Araly1|473556|fgenesh2_kg.1__3510__AT1G34020.1 1114 0.0
Ahg327889 jgi|Araly1|327889|fgenesh1_pm.C_scaffold_7000116 366 2e-100
> Ahg489833 jgi|Araly1|489833|fgenesh2_kg.6__2967__AT4G09810.1
Length=1128
Score = 1375 bits (744), Expect = 0.0
Identities = 1036/1168 (89%), Gaps = 56/1168 (5%)
Strand=Plus/Plus
Query 1 AGATCACTCACTGATCCAATTCAAAAACTTCACCACCGAGCAATCTCGCCGGAAACAGAG 60
||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AGATCACTCACCAATCCAATTCAAATACTTAACCACCGAGCAATCTCGCCGGAAACAGAG 60
Query 61 CCTCTCTTCTTCACCGCC-GT---ATTTTC--TTCT-TCTCCAG-AAATGT-GGGATTGA 111
|||||||||||| || || | | | | |||| || | | ||| | | | |
Sbjct 61 CCTCTCTTCTTCTCCACCAATCAAAATAACGATTCTCGCTTC-GTCAATTTCTGTA-T-- 116
Query 112 AGAAGTTGACGAAGAAGA-CGAAGTTTAACAATGGCTCCAGTGAAAAAATCAGATAAGAA 170
|||| || | | || ||||| |||||||||||||||||||||||| ||||||||
Sbjct 117 AGAA--TG-TG--G-TGATCGAAGAAGAACAATGGCTCCAGTGAAAAAATCTGATAAGAA 170
Query 171 AGCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCAT 230
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 171 AGCAACATTAGATGCTGCTGCTTGGATCTTCAATGTTGTTACTTCTGTTGGAATCATCAT 230
Query 231 TGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGCTACAACGTTAACCGGTTT 290
||||||||||||||||| | |||||||||||||||||| ||||| |||||||||||
Sbjct 231 TGTTAATAAAGCTTTAA----T--TTATGGCTTTAGCTTTGCAACAACCTTAACCGGTTT 284
Query 291 ACATTTCGCCACTACGACGTTGATGACGCTTGTTTTAAGATGTTTAGGATATATACAACC 350
||||||||| || | |||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 285 ACATTTCGCTACGAAGACGTTGATGACACTTGTTTTAAGATGTTTAGGATATATTCAGCC 344
Query 351 TTCTCATCTTCCATTTACAGAGCTTCTT-AAGTTTATTCTGTTTGCTAATTTTTCGATTG 409
||||||||||||||||||||| ||| || ||||||||| ||||||| |||||||||||||
Sbjct 345 TTCTCATCTTCCATTTACAGACCTT-TTAAAGTTTATTTTGTTTGCGAATTTTTCGATTG 403
Query 410 TTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGATTGCAAAGCTTA 469
|||||||||||||||||| ||||||||||||||||||| ||| | | | ||| |
Sbjct 404 TTGGAATGAATGTTAGTCGTATGTGGAACTCTGTTGGG-TTT-T---A-T---AAG--T- 451
Query 470 GCATGATTCCTGTATCATGCTTGTTGGAA---GTA-GTATTTGATAAGATTCGTTACTCA 525
|||||||| || ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 452 --ATGATTCCCGTGTCATGCTTGTTGGAAGTTGTATATATTTGATAAGATTCGTTACTCG 509
Query 526 AGAGATACAAAACTTAGCATTGGACTTGTTCTTGTTGGTGTTGGTGTTTGTACTGTTACT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AGAGATACAAAACTTAGCATTGGACTTGTTCTTGTTGGTGTTGGTGTTTGTACTGTTACT 569
Query 586 GATGTTAGTGTTAACACCAAAGGTTTTGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCT 645
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 570 GACGTTAGTGTTAACACCAAAGGTTTCGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCT 629
Query 646 TTGCAACAATACTATGTACATTATCTACAGCGAAAGTACTCGCTTAGCTCATTCAACCTA 705
|||||| |||| ||| | | | | | || | |||||||| ||||||||||||||||||
Sbjct 630 TTGCAATAATA-TAT-T---TCA-CCAAAG-G-AAGTACTCACTTAGCTCATTCAACCTA 681
Query 706 CTGGGTCATACTGCTCCAGCTCAGGCTGCAACGTTATTGATAGTCGGTCCATTTCTCGAC 765
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 682 CTGGGTCATACTGCTCCAGCCCAGGCTGCAACGTTGTTGATAGTCGGTCCATTTCTCGAT 741
Query 766 TATTGGTTGACAGACAAACGGGTAGACATGTATGATTACAACTCTGTCTCTGTGATGTTT 825
|||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 742 TATTGGTTGACAGACAAACGGGTAGACATGTACGATTACAACTTTGTCTCTCTGATGTTT 801
Query 826 ATAACCCTCTCGTGCACAATAGCAATCGGGACAAACCTGAGCCAGTTCATCTGCATCGGG 885
|||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 802 ATAACCCTTTTGTGCACAATAGCTATCGGGACAATTCTAAGCCAGTTCATCTGCATCGGG 861
Query 886 AGATTCACAGCAGTGTCATTCCAAGTCCTGGGCCATATGAAGACGATCTTGGTGCTTGTA 945
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 862 AGATTCACAGCGGTATCATTCCAAGTCCTGGGCCATATGAAGACGATCTTGGTGCTGGTA 921
Query 946 ATGGGCTTCTTCTTCTTTGACAGAGATGGTCTAAACCTGCATGTGATTCTTGGCATGATC 1005
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 922 ATGGGCTTCTTCTTCTTTGACAGAGATGGTCTTAACCTGCATGTGGTCCTTGGCATGATT 981
Query 1006 ATTGCAGTACTCGGGATGATCTGGTACGGTAATGCCTCGTCCAAGCCAGGCGGCAAGGAG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 982 ATTGCAGTACTCGGGATGATCTGGTACGGTAATGCCTCGTCCAAGCCAGGCGGTAAAGAG 1041
Query 1066 AAGAAGAATTATTCTCTTCCAACGACCCGACAACAGAAACTTGGG-GCTACTTCAGATTC 1124
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||
Sbjct 1042 AAGAAGAATTATTCTCTTCCAACGACCCGACAACAGAAACA-GGGAGCTGCTTCGGATTC 1100
Query 1125 TGATGAACATCGAGATAAAGCGTAGCAA 1152
||||||| | | || |||||| ||||||
Sbjct 1101 TGATGAATACCAAGGTAAAGCTTAGCAA 1128
> Ahg473556 jgi|Araly1|473556|fgenesh2_kg.1__3510__AT1G34020.1
Length=1437
Score = 1114 bits (603), Expect = 0.0
Identities = 892/1030 (87%), Gaps = 25/1030 (2%)
Strand=Plus/Plus
Query 141 AATGGCTCCAGTGAAAAAATCAGATAAGAAAGCAACATTAGATGCTGCTGCTTGGATGTT 200
||||||||| |||| ||| | |||||||| ||| || ||||||||||||| ||||||||
Sbjct 216 AATGGCTCCTGTGAGTAAAGCTGATAAGAAGGCAGCAGTAGATGCTGCTGCGTGGATGTT 275
Query 201 CAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGG 260
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 276 CAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGG 335
Query 261 CTT-TAGCTTTGCTACAACGTTAACCGGTTTACATTTCGCCACTACGACGT-TGATGACG 318
|| ||||||||||||||| |||||||||||||||||||| || ||||| | ||||||||
Sbjct 336 -TTATAGCTTTGCTACAACCTTAACCGGTTTACATTTCGCGACAACGAC-TCTGATGACG 393
Query 319 CTTGTTTTAAGATGT-TTAGGATATATACAACCTTCTCATCTTCCATTTACAGAGCTTCT 377
|||||||||||||| || || ||||| || |||||||||||||| ||||| |||||| |
Sbjct 394 ATTGTTTTAAGATGTCTT-GGTTATATTCAGCCTTCTCATCTTCCGTTTACGGAGCTT-T 451
Query 378 TAAG-TTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGTGGA 436
| || |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 452 TGAGATTTATTCTGTTTGCGAATTTCTCGATTGTTGGAATGAATGTCAGTCTTATGTGGA 511
Query 437 ACTCTGTTGGGTTT-TATCAGATTGCAAAGCTTAGCATGATTCCTGTATCATGCTTGTTG 495
||||||| || ||| ||||||||||| ||||| || |||||||||||||| || ||||||
Sbjct 512 ACTCTGTCGG-TTTCTATCAGATTGCCAAGCTCAGTATGATTCCTGTATCCTGTTTGTTG 570
Query 496 GAAGTAGTATTT-GATAAGATTCGTTACTCAAGAGATACAAAACTTAGCATTGGACTTG- 553
||| | || ||| ||||||||||||||||| ||||| ||||| |||||||| ||| |||
Sbjct 571 GAAATGGT-TTTCGATAAGATTCGTTACTCCAGAGACACAAAGCTTAGCATAGGA-TTGG 628
Query 554 TTCTTGTTGGTGTTGGTGTTTGTACTGTTACTGATGTTAGTGTTAACACCAAAGGTTTTG 613
||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 629 TTCTTGTGGGTGTTGGTGTTTGCACTGTTACTGATGTTAGTGTAAACACTAAAGGCTTTG 688
Query 614 TTGCTGCTTTTGTTGCTGTGTGGAGTACTGCTTTGCAACAATACTATGTACATTATCTAC 673
| || ||||| ||||| ||||||||||||||| |||||||||||||||||||||| || |
Sbjct 689 TAGCCGCTTTCGTTGCCGTGTGGAGTACTGCTCTGCAACAATACTATGTACATTACCTTC 748
Query 674 AGCGAAAGTACTCGCTTAGCTCATTCAACCTACTGGGTCATACTGCTCCAGCTCAGGCTG 733
|||| ||||||||||||| ||||||||||||| |||| ||||| |||||||| || ||||
Sbjct 749 AGCGCAAGTACTCGCTTAACTCATTCAACCTATTGGGACATACCGCTCCAGCCCAAGCTG 808
Query 734 CAACGTTATTGATAGTCGGTCCATTTCTCGACTATTGGTTGACAGACAAACGGGTAGACA 793
|||| || || |||| || |||||||| || |||||| ||||||| ||| | |||||||
Sbjct 809 CAACATTGCTGGTAGTTGGCCCATTTCTTGATTATTGGCTGACAGAAAAAAGAGTAGACA 868
Query 794 TGTATGATTACAACTCTG-TCTCTGTGATGTTTATAACCCTCTCGTGCACAATAGCAATC 852
|||| || ||||| | || |||| ||| ||||||||||||| |||||||||||||| |||
Sbjct 869 TGTACGACTACAATT-TGGTCTCAGTGCTGTTTATAACCCTGTCGTGCACAATAGCGATC 927
Query 853 GGGACAAACCTGAGCCAGTTCATCTGCATCGGGAGATTCACAGCAGTGTCATTCCAAGTC 912
|| || ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct 928 GGAACCAACCTAAGCCAGTTCATCTGCATTGGGAGATTCACGGCTGTGTCGTTCCAAGTC 987
Query 913 CTGGGCCATATGAAGACGATCTTGGTGCTTG-TAATGGGCTTCTTCTTCTTTGACAGAGA 971
|| || || |||||||||||| | ||||| | ||||||||||||||||||||| |||||
Sbjct 988 CTAGGACACATGAAGACGATCCTAGTGCT-GATAATGGGCTTCTTCTTCTTTGGTAGAGA 1046
Query 972 TGGTCTAAACCTGCATGTGATTCTTGGCATGATCATTGCAGTACTCGGG-ATGATCTGGT 1030
||||||||| |||| ||| || |||| ||||| ||||||||||| ||| ||||||||||
Sbjct 1047 AGGTCTAAACTTGCACGTGGTTGTTGGAATGATAATTGCAGTACT-GGGTATGATCTGGT 1105
Query 1031 ACGGTAATGCCTCGTCCAAGCCAGGCGGCAAGGAGAAGAAGAAT-TATTCTCTTCCAACG 1089
||||||||||||| || |||||||| ||||| ||| || ||| |||||||||||||||
Sbjct 1106 ACGGTAATGCCTCTTCGAAGCCAGGAGGCAAAGAGC-GACGAAACTATTCTCTTCCAACG 1164
Query 1090 ACCCGACAACAGAAACTTGGGGCTACTTCAGATTCTGATGAACATCGA-GATAAAGCGTA 1148
||||| |||||||||||||| ||| |||| ||||| || || || ||| || ||||| ||
Sbjct 1165 ACCCGTCAACAGAAACTTGGAGCTGCTTCGGATTCGGACGA-CAACGAAGACAAAGCCTA 1223
Query 1149 GCAAGTAAGT 1158
| | ||||||
Sbjct 1224 GTA-GTAAGT 1232
> Ahg327889 jgi|Araly1|327889|fgenesh1_pm.C_scaffold_7000116
Length=1029
Score = 366 bits (198), Expect = 2e-100
Identities = 472/601 (79%), Gaps = 31/601 (5%)
Strand=Plus/Plus
Query 199 TTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTAT 258
||||||||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||
Sbjct 61 TTCAATGTTGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTAT 120
Query 259 GGCTTTAGCTTT-GCTACAACGTTAACCGGTTTACATTTCGCCACTACGACGTTGATGAC 317
|||||||| ||| |||||||| ||||||||||| ||||||| || || || ||| ||||
Sbjct 121 GGCTTTAG-TTTCGCTACAACATTAACCGGTTTGCATTTCGGAACAACCACATTGTTGAC 179
Query 318 G-CTTGTTTTAAGATGT-TTAGGATATATACAACCTTCTCATCTTCCATTTACA-GAGCT 374
||| | || | ||| || || ||||| ||||||||||| ||||| || | || ||
Sbjct 180 AACTT-TCTTGACATGGCTT-GGTTATATCCAACCTTCTCAGCTTCC-TTGGCCTGATCT 236
Query 375 TCTT-AAGTTTATTCTGTTTGCTAATTTTTCGATTGTTGGAATGAATGTTAGTCTTATGT 433
| || || || || |||| ||||| || || |||||||| ||||| || ||||| ||||
Sbjct 237 T-TTGAAATTCGTTTTGTTCGCTAACTTCTCCATTGTTGGGATGAACGTGAGTCTCATGT 295
Query 434 GGAACTCTGTTGGGTTTTATCAGATTGCAAAGCTTAGCATGATTCCTGTATCATGCTTGT 493
|||| |||||||| || || |||||||| ||||| || ||||| || || || || || |
Sbjct 296 GGAATTCTGTTGGATTCTACCAGATTGCGAAGCTGAGTATGATCCCGGTTTCTTGTTT-T 354
Query 494 -TGGAAGTAGTAT--TTGATAA-GATTC-GTTACTCAAGAGATACAAAACTTAGCATTG- 547
| ||||| ||| |||| || | | | | || |||||||||||||| |||||||||
Sbjct 355 CTAGAAGT--TATGCTTGACAATG-T-CAGGTATTCAAGAGATACAAAGCTTAGCATTTT 410
Query 548 GACTT-GTTCTTGTTGGTGTTGGTGTTTGTACTGTTACTGATGTTAGTGTTAA-CACCAA 605
| || ||||||| |||||||| || |||||||| || ||||||||||| || | | ||
Sbjct 411 G--TTAGTTCTTGCTGGTGTTGCCGTCTGTACTGTAACCGATGTTAGTGTCAATCTC-AA 467
Query 606 AGGTTTTGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCTTTGCAACAATACTATGTACA 665
|| ||| | |||||| | ||||||| ||||| || || | || ||||||||||||||
Sbjct 468 CGGATTTCTCGCTGCTGCTATTGCTGTCTGGAGCACCGCGCTCCAGCAATACTATGTACA 527
Query 666 TTATCTACAGCG-AAAGTACTCGCTTAGCTCATTCAACCTACTGG-GTCATACTGCTCCA 723
||||||||| || ||| || || || | || ||||| |||||| | ||||| ||||||
Sbjct 528 TTATCTACAACGGAAA-TATTCACTCGGTTCTTTCAATTTACTGGCG-CATACCGCTCCA 585
Query 724 GCTCAGGCTGCAACGTTATTGATAGTCGGTCCATTTCTCGACTATTGGTTGACAGAC-AA 782
| ||| |||||| | || ||| | ||||| |||||||| ||||| ||||||||| || ||
Sbjct 586 GTTCAAGCTGCATCATTGTTGTTGGTCGGACCATTTCTAGACTACTGGTTGACAAACCAA 645
Query 783 A 783
|
Sbjct 646 A 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5